You are here

Home

KJC3_006748-T2, KJC3_006748-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006748-T2
Unique NameKJC3_006748-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:313934..316103-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006748-T2 ID=KJC3_006748-T2|Name=KJC3_006748-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2170bp|location=Sequence derived from alignment at ch5:313934..316103- (Aspergillus niger KJC3)
CTTTTGGTGTCATTTTTCCTTTTCTCTATTTTCGTTTTCATCTCCACTCC
TTTCTTGTCAAAGCGCCATGCTTGCTTTTCTATACCAAACTACTGGTTGC
GTTCCTGTGCGTGCTGCTCCCTGGTTGCATTACCAAGCGTCCAGCATATA
TTTGCAAATGATGGCTACGCCGCTTGTCGTTATCCAATCTATGTATCCGG
TGTGGCGTGATGTGTCAGGTCTTAACTTTTTGTATTTGGAATTTTGCAGT
CATTATTGACGATTTGACGATTGAAATCGGAAAAACGTCCAGCAGATGCA
GCTTACTGACCAGGACCCGTCCTTCCAGTATTTCGCAGTATCCTACATCC
ATTCCCATGAGCGGTACTCACACGTGCTCTGGTTCGTCTCCCACCCTTAC
TCTCCTCCCCATTATGTCATTTTGGCTAACATGCGCCCTTCATCTACTAT
GGTGAGGGTGAAATGCAGAAAAATGCTCCCCGATGTCGAACTCACTCCAC
ACGTATTCGGCAAGAATGCTGTATGATAGAATGTCGAACACCATATCCCA
TCCGGTATCCTCACTGTGAGTTTTTCTCTACTGTTCATCCACCGTTGCAT
GTGCCGATTACTAAGAAACTCAGGGATCTATACAGCCCACCGTCCGCCAC
AATGTCACTCAGCCTGAAGTCCCAGAAAATTGTCACCCCTGGCAGTGCGT
CCACCATGGGAAGAAGTGATTGGTTTCCAGAAGCTTACAATATCCATCAA
CAATTATCCTTAACACCTTCCTCCGATATGGAGAAGATAACAAGAACTGC
ACCCTTTGCAACAGCACATAGAGCTCCGAAGAACTCTACTGCGCGATCTC
AGGCTGTGTATCTCGGTTCAGAGAATATGTTAATGGGCCAAGCTCAGGGG
CGGTTGCCAGAGCCATTTGCTGGCTCTCCTCCGTTCTACGATACTATATT
GCTTCTACCTGTCGTTTGCGGGACTTCGTTCCTGAAGCCTGAGATACTTG
CCGAGATACATAAAGGTTTCTTCCAGGTTGATGATAAGTGGACGTGCTAT
AGGCGAAACTACTTTTCAATTTCGTGTTCGTTTACTTTGCAACCTTGGTC
AAGCGCTCCGTTATACGTGAAAGTTTCAGATCAGTGGACAGAACGTATTA
CAAGGTTTGCCATGTCAATCTCCGCCATTGTGAATCAACAGGTCGCAGAA
ATCCGCGACTTGGTTCAATACAGCCCAAAACGGGATAAGCAGTCGGGCAG
AAAACCAGGAAGGGTTGTATTGCAGCCCTGTCAGCCTGAGCACTTGGCTG
TTGGCCATGAAGCGTCGTCAAACAGCATTCAGCATGGCTTATCAATAGGT
TATCAGTCTACTGAGAGGCCCCTAGGTTACGAGGAGTATCCGGGAGTAGC
CCAGCCTTCACAACCCCCATACCGGCACACGTTTGAGCGGGTTCAGTTCC
AGAAGGCGACCGCGAACAACAGAATGCGGCGAGCCCAGCAGCAGTACTAC
AACGTAGTCGTTGAACTCTATGCTGAGGTCGCCAGCTCTGCTCAGGGAAC
TGAAAGCCAGTGGTTTCGAGTTGCCAGGCGACTTTCGCATCCAATGGTAG
TCCGGGGTCGCTCTCCAAACCACTTCAAAAACAACCGCCGCAACAATCCG
GCAAGAATGGATTTTTCAGAAGGAATAAAAAAGAAGCACGAAGACCAGCA
TAGTACATGACCACAACGGGTCACGTGCACGAGGCAAATCCAAAGCAGAT
ATACTGTGTAGTGTCAGTACTGTACAACATCCAGGCCGTTTTGAGTTCCA
CCTCATATGAGCAAGTCCTACTTGGAAAAGTGCGACGGATTGAGCTATAT
CTCTTGCTAACGCTATGTGACATCGACACGGGCGGCAGCGGGCAAATAGA
GGGGGGGGGGCAAGTCTTGGACAATGCCCCGAGGGCCTGAGAAATGAGAG
GTATTCTGGGTGTTCCCATATCCTCACGCACTTTCCATGTTCCTACTATA
TTCTGCTTAGCTAGTCGTTGCCCCTTTCTTTGCCACTAAACGGATTGCAT
TTCTGTTGATCGTGATCGATGTATGAACAACTCCCCAACTATGGGTCCGG
CAATTTTAGTGTTTAATTGCGGTTCCTCGCAGCGCACCGAAATTGATCTC
AACACCAAGCGATCATGAAT
back to top

Coding sequence (CDS) from alignment at ch5:313934..316103-

>KJC3_006748-T2 ID=KJC3_006748-T2|Name=KJC3_006748-T2|organism=Aspergillus niger KJC3|type=CDS|length=3627bp|location=Sequence derived from alignment at ch5:313934..316103- (Aspergillus niger KJC3)
GGATCTATACAGCCCACCGTCCGCCACAATGTCACTCAGCCTGAAGTCCC
AGAAAATTGTCACCCCTGGCAGTGCGTCCACCATGGGAAGAAGTGATTGG
TTTCCAGAAGCTTACAATATCCATCAACAATTATCCTTAACACCTTCCTC
CGATATGGAGAAGATAACAAGAACTGCACCCTTTGCAACAGCACATAGAG
CTCCGAAGAACTCTACTGCGCGATCTCAGGCTGTGTATCTCGGTTCAGAG
AATATGTTAATGGGCCAAGCTCAGGGGCGGTTGCCAGAGCCATTTGCTGG
CTCTCCTCCGTTCTACGATACTATATTGCTTCTACCTGTCGTTTGCGGGA
CTTCGTTCCTGAAGCCTGAGATACTTGCCGAGATACATAAAGGTTTCTTC
CAGGTTGATGATAAGTGGACGTGCTATAGGCGAAACTACTTTTCAATTTC
GTGTTCGTTTACTTTGCAACCTTGGTCAAGCGCTCCGTTATACGTGAAAG
TTTCAGATCAGTGGACAGAACGTATTACAAGGTTTGCCATGTCAATCTCC
GCCATTGTGAATCAACAGGTCGCAGAAATCCGCGACTTGGTTCAATACAG
CCCAAAACGGGATAAGCAGTCGGGCAGAAAACCAGGAAGGGTTGTATTGC
AGCCCTGTCAGCCTGAGCACTTGGCTGTTGGCCATGAAGCGTCGTCAAAC
AGCATTCAGCATGGCTTATCAATAGGTTATCAGTCTACTGAGAGGCCCCT
AGGTTACGAGGAGTATCCGGGAGTAGCCCAGCCTTCACAACCCCCATACC
GGCACACGTTTGAGCGGGTTCAGTTCCAGAAGGCGACCGCGAACAACAGA
ATGCGGCGAGCCCAGCAGCAGTACTACAACGTAGTCGTTGAACTCTATGC
TGAGGTCGCCAGCTCTGCTCAGGGAACTGAAAGCCAGTGGTTTCGAGTTG
CCAGGCGACTTTCGCATCCAATGGTAGTCCGGGGTCGCTCTCCAAACCAC
TTCAAAAACAACCGCCGCAACAATCCGGCAAGAATGGATTTTTCAGAAGG
AATAAAAAAGAAGCACGAAGACCAGCATAGTACATGAAAAAATGCTCCCC
GATGTCGAACTCACTCCACACGTATTCGGCAAGAATGCTGTATGATAGAA
TGTCGAACACCATATCCCATCCGGTATCCTCACTATGAGCGGTACTCACA
CGTGCTCTGGGATCTATACAGCCCACCGTCCGCCACAATGTCACTCAGCC
TGAAGTCCCAGAAAATTGTCACCCCTGGCAGTGCGTCCACCATGGGAAGA
AGTGATTGGTTTCCAGAAGCTTACAATATCCATCAACAATTATCCTTAAC
ACCTTCCTCCGATATGGAGAAGATAACAAGAACTGCACCCTTTGCAACAG
CACATAGAGCTCCGAAGAACTCTACTGCGCGATCTCAGGCTGTGTATCTC
GGTTCAGAGAATATGTTAATGGGCCAAGCTCAGGGGCGGTTGCCAGAGCC
ATTTGCTGGCTCTCCTCCGTTCTACGATACTATATTGCTTCTACCTGTCG
TTTGCGGGACTTCGTTCCTGAAGCCTGAGATACTTGCCGAGATACATAAA
GGTTTCTTCCAGGTTGATGATAAGTGGACGTGCTATAGGCGAAACTACTT
TTCAATTTCGTGTTCGTTTACTTTGCAACCTTGGTCAAGCGCTCCGTTAT
ACGTGAAAGTTTCAGATCAGTGGACAGAACGTATTACAAGGTTTGCCATG
TCAATCTCCGCCATTGTGAATCAACAGGTCGCAGAAATCCGCGACTTGGT
TCAATACAGCCCAAAACGGGATAAGCAGTCGGGCAGAAAACCAGGAAGGG
TTGTATTGCAGCCCTGTCAGCCTGAGCACTTGGCTGTTGGCCATGAAGCG
TCGTCAAACAGCATTCAGCATGGCTTATCAATAGGTTATCAGTCTACTGA
GAGGCCCCTAGGTTACGAGGAGTATCCGGGAGTAGCCCAGCCTTCACAAC
CCCCATACCGGCACACGTTTGAGCGGGTTCAGTTCCAGAAGGCGACCGCG
AACAACAGAATGCGGCGAGCCCAGCAGCAGTACTACAACGTAGTCGTTGA
ACTCTATGCTGAGGTCGCCAGCTCTGCTCAGGGAACTGAAAGCCAGTGGT
TTCGAGTTGCCAGGCGACTTTCGCATCCAATGGTAGTCCGGGGTCGCTCT
CCAAACCACTTCAAAAACAACCGCCGCAACAATCCGGCAAGAATGGATTT
TTCAGAAGGAATAAAAAAGAAGCACGAAGACCAGCATAGTACATGAAAAA
ATGCTCCCCGATGTCGAACTCACTCCACACGTATTCGGCAAGAATGCTGT
ATGATAGAATGTCGAACACCATATCCCATCCGGTATCCTCACTATGAGCG
GTACTCACACGTGCTCTGGGATCTATACAGCCCACCGTCCGCCACAATGT
CACTCAGCCTGAAGTCCCAGAAAATTGTCACCCCTGGCAGTGCGTCCACC
ATGGGAAGAAGTGATTGGTTTCCAGAAGCTTACAATATCCATCAACAATT
ATCCTTAACACCTTCCTCCGATATGGAGAAGATAACAAGAACTGCACCCT
TTGCAACAGCACATAGAGCTCCGAAGAACTCTACTGCGCGATCTCAGGCT
GTGTATCTCGGTTCAGAGAATATGTTAATGGGCCAAGCTCAGGGGCGGTT
GCCAGAGCCATTTGCTGGCTCTCCTCCGTTCTACGATACTATATTGCTTC
TACCTGTCGTTTGCGGGACTTCGTTCCTGAAGCCTGAGATACTTGCCGAG
ATACATAAAGGTTTCTTCCAGGTTGATGATAAGTGGACGTGCTATAGGCG
AAACTACTTTTCAATTTCGTGTTCGTTTACTTTGCAACCTTGGTCAAGCG
CTCCGTTATACGTGAAAGTTTCAGATCAGTGGACAGAACGTATTACAAGG
TTTGCCATGTCAATCTCCGCCATTGTGAATCAACAGGTCGCAGAAATCCG
CGACTTGGTTCAATACAGCCCAAAACGGGATAAGCAGTCGGGCAGAAAAC
CAGGAAGGGTTGTATTGCAGCCCTGTCAGCCTGAGCACTTGGCTGTTGGC
CATGAAGCGTCGTCAAACAGCATTCAGCATGGCTTATCAATAGGTTATCA
GTCTACTGAGAGGCCCCTAGGTTACGAGGAGTATCCGGGAGTAGCCCAGC
CTTCACAACCCCCATACCGGCACACGTTTGAGCGGGTTCAGTTCCAGAAG
GCGACCGCGAACAACAGAATGCGGCGAGCCCAGCAGCAGTACTACAACGT
AGTCGTTGAACTCTATGCTGAGGTCGCCAGCTCTGCTCAGGGAACTGAAA
GCCAGTGGTTTCGAGTTGCCAGGCGACTTTCGCATCCAATGGTAGTCCGG
GGTCGCTCTCCAAACCACTTCAAAAACAACCGCCGCAACAATCCGGCAAG
AATGGATTTTTCAGAAGGAATAAAAAAGAAGCACGAAGACCAGCATAGTA
CATGAAAAAATGCTCCCCGATGTCGAACTCACTCCACACGTATTCGGCAA
GAATGCTGTATGATAGAATGTCGAACACCATATCCCATCCGGTATCCTCA
CTATGAGCGGTACTCACACGTGCTCTG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006748KJC3_006748Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006748-T2KJC3_006748-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006748-T2.cdsKJC3_006748-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006748-T2.utr3p1KJC3_006748-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006748-T2.exon4KJC3_006748-T2.exon4Aspergillus niger KJC3exon
KJC3_006748-T2.exon3KJC3_006748-T2.exon3Aspergillus niger KJC3exon
KJC3_006748-T2.exon2KJC3_006748-T2.exon2Aspergillus niger KJC3exon
KJC3_006748-T2.exon1KJC3_006748-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006748-T2.utr5p2KJC3_006748-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_006748-T2.utr5p1KJC3_006748-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR008967
DBxrefInterPro:IPR037141
DBxrefInterPro:IPR024061
DBxrefPFAM:PF05224
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:313934..316103 -
Powered by Drupal