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KJC3_006749-T1, KJC3_006749-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006749-T1
Unique NameKJC3_006749-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:336570..338117-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006749-T1 ID=KJC3_006749-T1|Name=KJC3_006749-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1548bp|location=Sequence derived from alignment at ch5:336570..338117- (Aspergillus niger KJC3)
GTGAATCGGTTGACGGTACGAGCGTCTGTCTCATGATTGCTACGGCCCGC
TGCTGAGGCCTTCGCGAGAACAGTCCAAGTGGGTCTGCGTACCCTGTAAG
GTATAGTGAGACCGTGACTGAATGAGCTGCAGAAGGGTTTGCTTGATGCC
CGCTGTACTCTGATTATTTTTGTATTCGGCTAAAAGACACTAGCAGTTCG
ATCGGTAGTAGTAACACAACTATAATATAAATATTTCTAGTTATAATAAG
TATTAACCTCCCTTAGCTTTCACACTTGCCCCCTTAACTCAGACAGCCAG
TTTCTATCTTATAAGGCATTATTAGTGTGAAGCTGAACTTCTCTAGTCTG
ACAGGTGCAATATCTGACAGGACCGATAATAACTGGGTCTTGTCGACCAG
GCGGCTAGCCAAGCAACTTCAAATATACCAGGCGCCTTGCATGCTGCTTG
ACACCCTTGCTGCGAACCTTGGATTACCCAACCTGCTGTCATTGGTCGAC
AGATCTTCCCGCCATAGTCCGTCTGCTGGGCATGCAGGGGTTTACGGCAG
GTCTGCAGCGGCAGCGGCAGCGGCAGCATACAAATAACATCTGCGACCGT
CATATATTATTAAACACGTCTTTTTACCCCTCTCGCTCTATGACACACTA
AAGCCTTTTCACATATAGCGACACTACACACACCTGTTACTCTCAGCCAA
ATCTTTTCTACCGCCCTTTCAGTGCATTTCTCCGAGTTATTGTTTCACCT
CCCTAAAACGTCGCTGAAAATGAATGAAAAAGTGACCCTGCGACCTTTGC
GACCGGCGGCGAAAGCCTTACACTCTGAACCGAGCTATAGCAAGCCAAAA
GAAAAACGGCAGAGCGTCGCATGCAGAGCTTGTCGCGCAAAGCGGAGAAA
GGTTCGTTCATCTCAAACATTGTTTACTCTTGAACCTTATTGATGGGTAT
TAGTGTACTGGTGCACCAATTTGCCAGTCATGCGTGAGATTGAAATTAGC
TTGCGACTTTGAGCCATACAAAGATAAACGCAGGAAATTGGCGCTACAAC
ATGTAGGGAAGGCCAGGCAACGACTTGAGATCCTTTTGGAGCTTCTGCTT
ACATTCTTAAACAAGGAGGAAGACGAGACGATTCTTGAATGGAGAAAATG
CCTGAAAGACACCCCGTCACTTGAAATGATGATCGCAGACCTAGAAAGAA
GAAAAGAACCAGGCTTATGATACCATCATAAGTCATGGTACTTTGTTAAC
CGATAGCCGCTGTTGTTTCATCTCTTGTGCGCTATCTACTCACGCAGGAG
ATTGAACAAGTGTATGAGTAGCAAGGCAGACCTATATTATAGATGCTGCA
TTGATAAACACCGAAGTCTCCTTAGCAGAAAAGCCTGGTACTTTCTTCGG
CCTCCTGCTCTAATATATTGCTTTTCATTCCCTTCATGCGTCATTTGCGA
TCGTATGACAGCGTTTCGCCTGCTCAATCTGTTTCCTTATGTCTCTGACC
CTCGCGTTACCGGGCGCAGTTGATCCGGTAGTGCCCGGTGTCTAAGGC
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Coding sequence (CDS) from alignment at ch5:336570..338117-

>KJC3_006749-T1 ID=KJC3_006749-T1|Name=KJC3_006749-T1|organism=Aspergillus niger KJC3|type=CDS|length=1008bp|location=Sequence derived from alignment at ch5:336570..338117- (Aspergillus niger KJC3)
GAGGAAGACGAGACGATTCTTGAATGGAGAAAATGCCTGAAAGACACCCC
GTCACTTGAAATGATGATCGCAGACCTAGAAAGAAGAAAAGAACCAGGCT
TATGATGTACTGGTGCACCAATTTGCCAGTCATGCGTGAGATTGAAATTA
GCTTGCGACTTTGAGCCATACAAAGATAAACGCAGGAAATTGGCGCTACA
ACATATGAATGAAAAAGTGACCCTGCGACCTTTGCGACCGGCGGCGAAAG
CCTTACACTCTGAACCGAGCTATAGCAAGCCAAAAGAAAAACGGCAGAGC
GTCGCATGCAGAGCTTGTCGCGCAAAGCGGAGAAAGGAGGAAGACGAGAC
GATTCTTGAATGGAGAAAATGCCTGAAAGACACCCCGTCACTTGAAATGA
TGATCGCAGACCTAGAAAGAAGAAAAGAACCAGGCTTATGATGTACTGGT
GCACCAATTTGCCAGTCATGCGTGAGATTGAAATTAGCTTGCGACTTTGA
GCCATACAAAGATAAACGCAGGAAATTGGCGCTACAACATATGAATGAAA
AAGTGACCCTGCGACCTTTGCGACCGGCGGCGAAAGCCTTACACTCTGAA
CCGAGCTATAGCAAGCCAAAAGAAAAACGGCAGAGCGTCGCATGCAGAGC
TTGTCGCGCAAAGCGGAGAAAGGAGGAAGACGAGACGATTCTTGAATGGA
GAAAATGCCTGAAAGACACCCCGTCACTTGAAATGATGATCGCAGACCTA
GAAAGAAGAAAAGAACCAGGCTTATGATGTACTGGTGCACCAATTTGCCA
GTCATGCGTGAGATTGAAATTAGCTTGCGACTTTGAGCCATACAAAGATA
AACGCAGGAAATTGGCGCTACAACATATGAATGAAAAAGTGACCCTGCGA
CCTTTGCGACCGGCGGCGAAAGCCTTACACTCTGAACCGAGCTATAGCAA
GCCAAAAGAAAAACGGCAGAGCGTCGCATGCAGAGCTTGTCGCGCAAAGC
GGAGAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006749KJC3_006749Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006749-T1KJC3_006749-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006749-T1.cdsKJC3_006749-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006749-T1.utr3p1KJC3_006749-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006749-T1.exon5KJC3_006749-T1.exon5Aspergillus niger KJC3exon
KJC3_006749-T1.exon4KJC3_006749-T1.exon4Aspergillus niger KJC3exon
KJC3_006749-T1.exon3KJC3_006749-T1.exon3Aspergillus niger KJC3exon
KJC3_006749-T1.exon2KJC3_006749-T1.exon2Aspergillus niger KJC3exon
KJC3_006749-T1.exon1KJC3_006749-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006749-T1.utr5p3KJC3_006749-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_006749-T1.utr5p2KJC3_006749-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_006749-T1.utr5p1KJC3_006749-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:336570..338117 -
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