You are here

Home

KJC3_006769-T1, KJC3_006769-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006769-T1
Unique NameKJC3_006769-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:400020..402294+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006769-T1 ID=KJC3_006769-T1|Name=KJC3_006769-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2275bp|location=Sequence derived from alignment at ch5:400020..402294+ (Aspergillus niger KJC3)
CGAAAAGAGCCGACCGACCCCCCTCCCACTCCGCTTCCTCTCATCGTTCA
TCCCAATCTCAGATGCGTGACGGTTGATCAGCTTTTTCATCGCTGCCCTT
CAATATGCCCCCTCCCGTCGGCAGATACGGGCCTACTGGCCTAACAGCTT
CCTATACCCACCTACAGCAAGCCCATCTCCAGCAACAGCAACAAGCCCAA
CATCACCCGGCCCACGCCCAGTCGGCCAACTCAGCCCTCCCTCCTCCATC
TCTCGGTGGTCACCCCGGTTTTGCCGCCGGAAACCCGAACACGAATATCA
ATCCGTTTACACTGTCCGGCACCGGTATCGCAAACGGTATGTCCGTCGCA
GGGTTCGCGAGTGCTGGGGATGGAGGCGGCACTGGACTCGCCAGCCATGC
CGCCCAGATGGGCTTCGCAAGAGGCGCGCAGATGCAGCAGCAGCAATTAC
ATCAGACTCACGATGGCCGACTAGCGCTCGAGGCCAAGGCCGGTGCGGTG
AAGACACGGATACGTGACGTATGGAGCCACAATCTGGCTCAGGAAATGGC
TATCCTCCGGCAGTTTGTCGAGAAGTATCCCTACATCAGCATGGTAAGAC
GCAGTTAGCTGTGGAGCTGGGAAACTGAAATGCTCGGCTGCTTTTACTGG
GAAATGAGTGACGCTAACCTAGGCCCAGGACACCGAGTTCCCCGGTATCG
TCGCACGTCCAATGGGAGCGTTCACGAATAAAGCAGATTACCATTATCAA
ACTCTCCGGTGTAACGTCGATCTCCTCAAAATGATCCAGCTCGGTATCAC
CTTGTTTTCTGCCGAAGGCGAGGTACCCCCGCCCAACGCTACGGATGCGA
ATGGCCAGCCTCTCGGAAACAGCCTCGTCCCTGCGCCCTGCACATGGCAG
TTCAACTTCCGGTTTTCTTTGGAGGAAGATATGTACGCACAAGAGTCCAC
GGCTATGTTGGCCAAGGCGGGTATCGATTTCTCGATGCATGAGAAGAACG
GCATCGATCCATTCGAGTTTGGTGCTCTTCTGATCAGCTCGGGGCTCGTT
CTCTTGGAAGATGTCCATTGGGTCTCTTTCCACTCCGGCTATGATTTCGG
ATATCTTATGAAGATTATGCTCTGTAAACCTCTTCCGGAGAACGAAGAGG
AATTCCACAAACTACTGAAGATCTTCTTCCCGTCGCTGTATGATATCAAA
TACTTGATGAAACATGCAGGACGCAATCAGGCTGTAAACGACTCTCCGTT
AACGCCAGCCGCTGCTCAGATCCTCACTAATCTCGGACAGAAGTCGGGTC
TGCAAGACATTGCGGATGAGCTCGGTGTCAAGCGCGTCGGCATCGCTCAT
CAGGCAGGGTCGGACTCTCTCGTGACGGGTGAGATCTACTGGAAGATGCG
CCAACTCGTCTTCAACGGCAGCATCGACGAGTCGAAATACTCAGGACAGA
TTTGGGGCTTGAACGGTCAGATGCCTGCTCTGTTGTACCACATGCAGCCA
CACCAAACTCCCAATCTCAACGGCGCCACAATTTACTCAGCTACCGGCAC
GCCAAGCACACCCAACGCCGGTCACCTGGGCAGTCAAACACCCCATACAC
TGACACCTGGTGCAACCGGCGGCGCCCTGGGGCAATTCCAGCTTGCCAAG
TCATGAGGCTCGTCGGTTTGTCTGGCTGTCTTGGTATTATCTCCTTTCAA
TATTTGGTGTTAGATCAGGTTCGGGGAGTTCGAGATATTGTCTACGTTTA
GGTACATTTTCCCTGACTCTTTGCTCTCTTGCTTGTATAGGCTCCTACTC
CTGGCCGGTTGGGTCTGGCAACAGCACCCGGATCCACGGTCACTTCTCTC
CATTGAACCTTAGCCGGCGGTTCTGATTACTTTTTTCACCCTGTTTGTCA
TGTTGCTTTCGGCAGAGATGGCAAGGAATCTATATGATGTGATGGATGTA
CATAGCATGTGGCATCGGTTGTGTTTTCTTGGTGCATTGTCTTGTTTTCT
TAGTCTTGTTTCTTTTTTTTTCTTTCGGTCCGTTTCAAGGAGTTCATCGC
CTGCAGTGCCTTCGTATTGCCTTGGAGGTGGGTGTTTGCAATAGGTGTAT
GGTGTTCGTCTCCGGCTGGAATGTGATCTACGTCAAGCATTATTTTCTTT
AAGCGTCCGGGGTTTGCCACTCCTTTCGTTTCTATCCACGTAGATAGAAC
TGGTTTGGAATCTACTTCGCCTCCTTGATAGACAGGTTATTAATTAGCAT
TATCAAACTATCTTGTTAGTAGCTC
back to top

Coding sequence (CDS) from alignment at ch5:400020..402294+

>KJC3_006769-T1 ID=KJC3_006769-T1|Name=KJC3_006769-T1|organism=Aspergillus niger KJC3|type=CDS|length=2934bp|location=Sequence derived from alignment at ch5:400020..402294+ (Aspergillus niger KJC3)
ATGCCCCCTCCCGTCGGCAGATACGGGCCTACTGGCCTAACAGCTTCCTA
TACCCACCTACAGCAAGCCCATCTCCAGCAACAGCAACAAGCCCAACATC
ACCCGGCCCACGCCCAGTCGGCCAACTCAGCCCTCCCTCCTCCATCTCTC
GGTGGTCACCCCGGTTTTGCCGCCGGAAACCCGAACACGAATATCAATCC
GTTTACACTGTCCGGCACCGGTATCGCAAACGGTATGTCCGTCGCAGGGT
TCGCGAGTGCTGGGGATGGAGGCGGCACTGGACTCGCCAGCCATGCCGCC
CAGATGGGCTTCGCAAGAGGCGCGCAGATGCAGCAGCAGCAATTACATCA
GACTCACGATGGCCGACTAGCGCTCGAGGCCAAGGCCGGTGCGGTGAAGA
CACGGATACGTGACGTATGGAGCCACAATCTGGCTCAGGAAATGGCTATC
CTCCGGCAGTTTGTCGAGAAGTATCCCTACATCAGCATGGACACCGAGTT
CCCCGGTATCGTCGCACGTCCAATGGGAGCGTTCACGAATAAAGCAGATT
ACCATTATCAAACTCTCCGGTGTAACGTCGATCTCCTCAAAATGATCCAG
CTCGGTATCACCTTGTTTTCTGCCGAAGGCGAGGTACCCCCGCCCAACGC
TACGGATGCGAATGGCCAGCCTCTCGGAAACAGCCTCGTCCCTGCGCCCT
GCACATGGCAGTTCAACTTCCGGTTTTCTTTGGAGGAAGATATGTACGCA
CAAGAGTCCACGGCTATGTTGGCCAAGGCGGGTATCGATTTCTCGATGCA
TGAGAAGAACGGCATCGATCCATTCGAGTTTGGTGCTCTTCTGATCAGCT
CGGGGCTCGTTCTCTTGGAAGATGTCCATTGGGTCTCTTTCCACTCCGGC
TATGATTTCGGATATCTTATGAAGATTATGCTCTGTAAACCTCTTCCGGA
GAACGAAGAGGAATTCCACAAACTACTGAAGATCTTCTTCCCGTCGCTGT
ATGATATCAAATACTTGATGAAACATGCAGGACGCAATCAGGCTGTAAAC
GACTCTCCGTTAACGCCAGCCGCTGCTCAGATCCTCACTAATCTCGGACA
GAAGTCGGGTCTGCAAGACATTGCGGATGAGCTCGGTGTCAAGCGCGTCG
GCATCGCTCATCAGGCAGGGTCGGACTCTCTCGTGACGGGTGAGATCTAC
TGGAAGATGCGCCAACTCGTCTTCAACGGCAGCATCGACGAGTCGAAATA
CTCAGGACAGATTTGGGGCTTGAACGGTCAGATGCCTGCTCTGTTGTACC
ACATGCAGCCACACCAAACTCCCAATCTCAACGGCGCCACAATTTACTCA
GCTACCGGCACGCCAAGCACACCCAACGCCGGTCACCTGGGCAGTCAAAC
ACCCCATACACTGACACCTGGTGCAACCGGCGGCGCCCTGGGGCAATTCC
AGCTTGCCAAGTCATGAATGCCCCCTCCCGTCGGCAGATACGGGCCTACT
GGCCTAACAGCTTCCTATACCCACCTACAGCAAGCCCATCTCCAGCAACA
GCAACAAGCCCAACATCACCCGGCCCACGCCCAGTCGGCCAACTCAGCCC
TCCCTCCTCCATCTCTCGGTGGTCACCCCGGTTTTGCCGCCGGAAACCCG
AACACGAATATCAATCCGTTTACACTGTCCGGCACCGGTATCGCAAACGG
TATGTCCGTCGCAGGGTTCGCGAGTGCTGGGGATGGAGGCGGCACTGGAC
TCGCCAGCCATGCCGCCCAGATGGGCTTCGCAAGAGGCGCGCAGATGCAG
CAGCAGCAATTACATCAGACTCACGATGGCCGACTAGCGCTCGAGGCCAA
GGCCGGTGCGGTGAAGACACGGATACGTGACGTATGGAGCCACAATCTGG
CTCAGGAAATGGCTATCCTCCGGCAGTTTGTCGAGAAGTATCCCTACATC
AGCATGGACACCGAGTTCCCCGGTATCGTCGCACGTCCAATGGGAGCGTT
CACGAATAAAGCAGATTACCATTATCAAACTCTCCGGTGTAACGTCGATC
TCCTCAAAATGATCCAGCTCGGTATCACCTTGTTTTCTGCCGAAGGCGAG
GTACCCCCGCCCAACGCTACGGATGCGAATGGCCAGCCTCTCGGAAACAG
CCTCGTCCCTGCGCCCTGCACATGGCAGTTCAACTTCCGGTTTTCTTTGG
AGGAAGATATGTACGCACAAGAGTCCACGGCTATGTTGGCCAAGGCGGGT
ATCGATTTCTCGATGCATGAGAAGAACGGCATCGATCCATTCGAGTTTGG
TGCTCTTCTGATCAGCTCGGGGCTCGTTCTCTTGGAAGATGTCCATTGGG
TCTCTTTCCACTCCGGCTATGATTTCGGATATCTTATGAAGATTATGCTC
TGTAAACCTCTTCCGGAGAACGAAGAGGAATTCCACAAACTACTGAAGAT
CTTCTTCCCGTCGCTGTATGATATCAAATACTTGATGAAACATGCAGGAC
GCAATCAGGCTGTAAACGACTCTCCGTTAACGCCAGCCGCTGCTCAGATC
CTCACTAATCTCGGACAGAAGTCGGGTCTGCAAGACATTGCGGATGAGCT
CGGTGTCAAGCGCGTCGGCATCGCTCATCAGGCAGGGTCGGACTCTCTCG
TGACGGGTGAGATCTACTGGAAGATGCGCCAACTCGTCTTCAACGGCAGC
ATCGACGAGTCGAAATACTCAGGACAGATTTGGGGCTTGAACGGTCAGAT
GCCTGCTCTGTTGTACCACATGCAGCCACACCAAACTCCCAATCTCAACG
GCGCCACAATTTACTCAGCTACCGGCACGCCAAGCACACCCAACGCCGGT
CACCTGGGCAGTCAAACACCCCATACACTGACACCTGGTGCAACCGGCGG
CGCCCTGGGGCAATTCCAGCTTGCCAAGTCATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006769KJC3_006769Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006769-T1.utr5p1KJC3_006769-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006769-T1.exon1KJC3_006769-T1.exon1Aspergillus niger KJC3exon
KJC3_006769-T1.exon2KJC3_006769-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006769-T1.cdsKJC3_006769-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006769-T1.utr3p1KJC3_006769-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006769-T1KJC3_006769-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262K67
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR036397
DBxrefInterPro:IPR006941
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:400020..402294 +
Powered by Drupal