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KJC3_006787-T1, KJC3_006787-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006787-T1
Unique NameKJC3_006787-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:446689..448602-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006787-T1 ID=KJC3_006787-T1|Name=KJC3_006787-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1914bp|location=Sequence derived from alignment at ch5:446689..448602- (Aspergillus niger KJC3)
CAGCACGTGATGTGATCCGGCATCCATGACGAGCCTTGGTGCCTGAGAGA
CTGATGGCCGATCGCTAAGGCATCTATCGCCGCTAACCCCTCTTGGGATC
CTCCGCCTAGAAGCCAAAAGTAGCCTGGCGCCGACCGAGCTGGACCCGAT
CTGTACAGAAAGTAAGAGGCAGCTCTACTCCGAACAGCCCAGGCAGGCCG
ACGGGTCATTTCCCCTAAACTGCACCTACGACTTGTCTTTTTCTTAATCG
GAACTTATATTCCCGGTGTCATTTATATATAGTCCACCCGGGTCCATCCT
GCGTTGGGGCCCGACTAAGTTCCTGTGATCTGATCTGGTTCGATTGTTTA
GCGCTCTTCCGTGATAGAGCGCTTACTTGCGCCCCGCCGAGAGCATTGAT
CCCCCTCACTTTCGCCCATACTACAACAACGATCCTCTCTAGTCCACTCC
CACCAAATTAGGTGACGCTGTTACAGATCCGTCGTTGGTCTCCAGCGTCC
ATACTAATTAGACCTTCTCCGATATTTTCTTCTCCTCCTCGATCCTCCTG
CTACAGACCATCTGCTGCACTTCCTCGCCCTCTCGGTAGTTAGCTACTGT
GAGGCTGACGAAGCTTTGACTATTGCCTCATAGTTCTTGAATCCTTTCTA
TTCTTATCTTTCAACTGTCCAGACGATACAAACCTACTTTGCCTGCTTAT
TCGGAAGAGGGAAAACAACACAAATTGCCTGTTCTTCCCAGATTAATTTA
CCCATCACCAAACTTCTTGCACGATGTCTGCCAATCGAGCAAGGCGTATC
GCCAAAGAGATCGCCGACATCCACGCCGACACACAGTCGCAAATCACGGC
TGAACCACTGCACGGTGGGGAGGATCTTACACATCTTCGAGGCACGTTCC
CAGGGCCTCCAGGAACACCCTATGAAGGTGGAACCTATACCATCGACATT
AAAATCCCCAACGATTATCCATTTCGGCCTCCCCACATGAAGTTTGTAAC
CAAGGTCTGGCATCCCAACGTCAGCAGTCAAACAGTAAGTCACCTCCAGT
CATGTATGCTCAGGCTGTCTCTAGTTTCCTGTTAATAAAGCTGATTGCCC
AGGGTGCCATCTGCCTAGACACTCTTTCCACTGCGTGGTCGCCGGTGCTC
ACCATCAAGTCTGCCCTTCTGTCACTGCAATCCCTGCTAAGCACACCCGA
ACCCAAAGATCCCCAAGATGCTGAGGTCGCCACGATGCTCCTTCGGAGAC
CGCAGGAGTTTGCACGAGTTGCTCAGGAGTGGGCTGTAATGTATGCAGGA
GCTCCCAGAAGGCATGCAGGTGAAGGCAGCGGCGGTGTGACAGACGAAAC
TCTTCGACTGCAGGAGATCAAGTCGAAAGAAGAGCAGGAACAAGAGGATT
TAAGCAAGTATGTACACGTGTGTAGGACAAACCTAATCTTGGCTAATCTT
TCTGTGCAGATACGACGGCTACAACAAAGACTTGATCGACCGATTCTGTA
ACATGGGATTTGACGTCGACCGCGTTGTAGCCGCATTCAAATACTACGGC
ATTGATCGAATGGACGGAGAAGACTACGAGCTGGAGGAGGCGTACATGGG
AGACATTACAGCGCGGCTCCTCGGCGAGCCGTAGTTGGTGTGATGTGTTG
ACACACGGTTCGGATGGTTTAAATTTTGCAATAGCGACGGTGCTAGGCGA
TTCAGTCGGGTTTGCTCTCTTGAATCTGGAGACCTCTTCGCACGAACATC
ATAAAGACAATCTCTTTTCTTTTTTCACAAGTCAGATCCCGAACAGTGAT
GACCTATGTTTGTTTAATATATCCAATTGCTTTCTACATCTTTCGGCAGC
ATAGCTCAAGTCAGGATACTATTAGCCTTGCATTTAGTCAATCAATATCT
GTATGACCCAAAGG
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Coding sequence (CDS) from alignment at ch5:446689..448602-

>KJC3_006787-T1 ID=KJC3_006787-T1|Name=KJC3_006787-T1|organism=Aspergillus niger KJC3|type=CDS|length=2223bp|location=Sequence derived from alignment at ch5:446689..448602- (Aspergillus niger KJC3)
ATACGACGGCTACAACAAAGACTTGATCGACCGATTCTGTAACATGGGAT
TTGACGTCGACCGCGTTGTAGCCGCATTCAAATACTACGGCATTGATCGA
ATGGACGGAGAAGACTACGAGCTGGAGGAGGCGTACATGGGAGACATTAC
AGCGCGGCTCCTCGGCGAGCCGTAGGGTGCCATCTGCCTAGACACTCTTT
CCACTGCGTGGTCGCCGGTGCTCACCATCAAGTCTGCCCTTCTGTCACTG
CAATCCCTGCTAAGCACACCCGAACCCAAAGATCCCCAAGATGCTGAGGT
CGCCACGATGCTCCTTCGGAGACCGCAGGAGTTTGCACGAGTTGCTCAGG
AGTGGGCTGTAATGTATGCAGGAGCTCCCAGAAGGCATGCAGGTGAAGGC
AGCGGCGGTGTGACAGACGAAACTCTTCGACTGCAGGAGATCAAGTCGAA
AGAAGAGCAGGAACAAGAGGATTTAAGCAAATGTCTGCCAATCGAGCAAG
GCGTATCGCCAAAGAGATCGCCGACATCCACGCCGACACACAGTCGCAAA
TCACGGCTGAACCACTGCACGGTGGGGAGGATCTTACACATCTTCGAGGC
ACGTTCCCAGGGCCTCCAGGAACACCCTATGAAGGTGGAACCTATACCAT
CGACATTAAAATCCCCAACGATTATCCATTTCGGCCTCCCCACATGAAGT
TTGTAACCAAGGTCTGGCATCCCAACGTCAGCAGTCAAACAATACGACGG
CTACAACAAAGACTTGATCGACCGATTCTGTAACATGGGATTTGACGTCG
ACCGCGTTGTAGCCGCATTCAAATACTACGGCATTGATCGAATGGACGGA
GAAGACTACGAGCTGGAGGAGGCGTACATGGGAGACATTACAGCGCGGCT
CCTCGGCGAGCCGTAGGGTGCCATCTGCCTAGACACTCTTTCCACTGCGT
GGTCGCCGGTGCTCACCATCAAGTCTGCCCTTCTGTCACTGCAATCCCTG
CTAAGCACACCCGAACCCAAAGATCCCCAAGATGCTGAGGTCGCCACGAT
GCTCCTTCGGAGACCGCAGGAGTTTGCACGAGTTGCTCAGGAGTGGGCTG
TAATGTATGCAGGAGCTCCCAGAAGGCATGCAGGTGAAGGCAGCGGCGGT
GTGACAGACGAAACTCTTCGACTGCAGGAGATCAAGTCGAAAGAAGAGCA
GGAACAAGAGGATTTAAGCAAATGTCTGCCAATCGAGCAAGGCGTATCGC
CAAAGAGATCGCCGACATCCACGCCGACACACAGTCGCAAATCACGGCTG
AACCACTGCACGGTGGGGAGGATCTTACACATCTTCGAGGCACGTTCCCA
GGGCCTCCAGGAACACCCTATGAAGGTGGAACCTATACCATCGACATTAA
AATCCCCAACGATTATCCATTTCGGCCTCCCCACATGAAGTTTGTAACCA
AGGTCTGGCATCCCAACGTCAGCAGTCAAACAATACGACGGCTACAACAA
AGACTTGATCGACCGATTCTGTAACATGGGATTTGACGTCGACCGCGTTG
TAGCCGCATTCAAATACTACGGCATTGATCGAATGGACGGAGAAGACTAC
GAGCTGGAGGAGGCGTACATGGGAGACATTACAGCGCGGCTCCTCGGCGA
GCCGTAGGGTGCCATCTGCCTAGACACTCTTTCCACTGCGTGGTCGCCGG
TGCTCACCATCAAGTCTGCCCTTCTGTCACTGCAATCCCTGCTAAGCACA
CCCGAACCCAAAGATCCCCAAGATGCTGAGGTCGCCACGATGCTCCTTCG
GAGACCGCAGGAGTTTGCACGAGTTGCTCAGGAGTGGGCTGTAATGTATG
CAGGAGCTCCCAGAAGGCATGCAGGTGAAGGCAGCGGCGGTGTGACAGAC
GAAACTCTTCGACTGCAGGAGATCAAGTCGAAAGAAGAGCAGGAACAAGA
GGATTTAAGCAAATGTCTGCCAATCGAGCAAGGCGTATCGCCAAAGAGAT
CGCCGACATCCACGCCGACACACAGTCGCAAATCACGGCTGAACCACTGC
ACGGTGGGGAGGATCTTACACATCTTCGAGGCACGTTCCCAGGGCCTCCA
GGAACACCCTATGAAGGTGGAACCTATACCATCGACATTAAAATCCCCAA
CGATTATCCATTTCGGCCTCCCCACATGAAGTTTGTAACCAAGGTCTGGC
ATCCCAACGTCAGCAGTCAAACA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBC1_2KJC3_006787Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006787-T1KJC3_006787-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006787-T1.cdsKJC3_006787-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006787-T1.utr3p1KJC3_006787-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006787-T1.exon3KJC3_006787-T1.exon3Aspergillus niger KJC3exon
KJC3_006787-T1.exon2KJC3_006787-T1.exon2Aspergillus niger KJC3exon
KJC3_006787-T1.exon1KJC3_006787-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006787-T1.utr5p1KJC3_006787-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009060
DBxrefInterPro:IPR023313
DBxrefInterPro:IPR000608
DBxrefInterPro:IPR015368
DBxrefInterPro:IPR016135
DBxrefPFAM:PF00179
DBxrefPFAM:PF09288
ProductUbiquitin-conjugating enzyme E2 1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:446689..448602 -
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