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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:568371..569861+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006827-T1 ID=KJC3_006827-T1|Name=KJC3_006827-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1491bp|location=Sequence derived from alignment at ch5:568371..569861+ (Aspergillus niger KJC3)
AACTTATCACCATACGCCCTCTGATTGGCCCATCCCAGCCATCCCAGGGT
TCCCGCCCCGGTACCCTAATTACCCAATTCGCGCAGATCTCCGCAGGCGG
TGAGCCAAATGCAAGCTCGGCCGGAACTTTTTTCTCAGCCATTGGATCAT
GGCGCTGTGAACGCCCGCCAGCGCTTCGGCCTTTTCCTTCCTGGACATTT
AACAATCTGGCCCCAACGGAGCCATCCTCAACCGATTGACAAAAAGGGGG
CACATTTGCAGTGAATATTATCACCGCCCGGCATGTCCCGATTCGGCGCA
AAGAAAGGCAGAAAGCTCCCCGGAGCCGAATTCACTTGGGAGGCAGATCC
CAGCGGAGAACCTGATACGGCGCCGACGCCTTTGTTCCCGGTATGTTTTG
GGCTGATGTGATGTGATGTGATATATTTGCTTCTTTGTCCGTTTGCTTTT
GTGACACGGTATTTTCTTCGTTGCTGTTGCGTCTACCAGCGTCGTTTACA
TCACCCTGTTGCTATAGCATTCTGGCTTGCTGTTACTTCTTCTTCTACAA
TAAGAGAAAAGGACAGGTTCTAATCATGTCTCTCTACAACCAGAAATACA
CCGTCCCCCGCGCCAGACCTCTCACCTCGCAGGAACAATTGCAGGTGGAT
TTCTATCGTACTCTCCGGGAACGGTTCCACGATGGCCCGTATTACTCGAT
TCTGGAGGGGGCGGGGTCGACGATGAAGAAGGATAGCGCGGCGCGGGTGA
ACTTCGATCCGTTTCATGGCATGCCTAGTTATTCGGGCAAGTATCAGAAG
AAGAAGAGGGCGTTGCCGAGGTTACAGGGGAGACAGTATGGTGAGTTTGT
CCATTATTTTTCATGAACGACGTGAGAGATATGTGCTAATGAGATCGTCT
TTGTAGTGATGAAGTTCTTCCCCCGGGAATTGTGGCAGACAATTCAGCCG
ACGTTCAAGCCCGATGCCGCGATGGATGGGTACGTGCCGCAGGTGGCGCG
GGCCGGGGTGAAGCGGGGATTCGAGGACGATGATGAAGAGGAAGATGAGG
ATGCGGCGAAGCGGGCGAAGGCTGGTGGTGAGGAGGGTGAAGGAGCTGAG
GATGATGATGACGGGGACGGGGATATCCTGGATCCGGAGGAGGAGCAAGA
AGGGGAGGAGGAGATTGAAGATGATGACTTTGAGGATGATGATGATGAGA
TGGGTGGGGATTATAACGCTGAGCAGTACTTTGATGGTGGTGATGATGAG
TATGGGGATGATGGGTTCGGAGATGGTGGTGGTGGAGGGGAGGAGGATAC
TTATTAGATCGAGCTGGATTCTTGAGATACCCTTTGTTCAAAACTATTAT
TCTTTGTCGGTTGATCTTATCAATCTAGCGATTACTTTGGTTTTTCTCCT
GAGGTTGATTGGGTAAATTCACGCCATTGCCGGAGTATCTGACGATATAA
TTATCTATCTAACATTAAAGTAGCACAACAGCGCATACACC back to topCoding sequence (CDS) from alignment at ch5:568371..569861+ >KJC3_006827-T1 ID=KJC3_006827-T1|Name=KJC3_006827-T1|organism=Aspergillus niger KJC3|type=CDS|length=2268bp|location=Sequence derived from alignment at ch5:568371..569861+ (Aspergillus niger KJC3)
ATGTCCCGATTCGGCGCAAAGAAAGGCAGAAAGCTCCCCGGAGCCGAATT
CACTTGGGAGGCAGATCCCAGCGGAGAACCTGATACGGCGCCGACGCCTT
TGTTCCCGAAATACACCGTCCCCCGCGCCAGACCTCTCACCTCGCAGGAA
CAATTGCAGGTGGATTTCTATCGTACTCTCCGGGAACGGTTCCACGATGG
CCCGTATTACTCGATTCTGGAGGGGGCGGGGTCGACGATGAAGAAGGATA
GCGCGGCGCGGGTGAACTTCGATCCGTTTCATGGCATGCCTAGTTATTCG
GGCAAGTATCAGAAGAAGAAGAGGGCGTTGCCGAGGTTACAGGGGAGACA
GTATGTGATGAAGTTCTTCCCCCGGGAATTGTGGCAGACAATTCAGCCGA
CGTTCAAGCCCGATGCCGCGATGGATGGGTACGTGCCGCAGGTGGCGCGG
GCCGGGGTGAAGCGGGGATTCGAGGACGATGATGAAGAGGAAGATGAGGA
TGCGGCGAAGCGGGCGAAGGCTGGTGGTGAGGAGGGTGAAGGAGCTGAGG
ATGATGATGACGGGGACGGGGATATCCTGGATCCGGAGGAGGAGCAAGAA
GGGGAGGAGGAGATTGAAGATGATGACTTTGAGGATGATGATGATGAGAT
GGGTGGGGATTATAACGCTGAGCAGTACTTTGATGGTGGTGATGATGAGT
ATGGGGATGATGGGTTCGGAGATGGTGGTGGTGGAGGGGAGGAGGATACT
TATTAGATGTCCCGATTCGGCGCAAAGAAAGGCAGAAAGCTCCCCGGAGC
CGAATTCACTTGGGAGGCAGATCCCAGCGGAGAACCTGATACGGCGCCGA
CGCCTTTGTTCCCGAAATACACCGTCCCCCGCGCCAGACCTCTCACCTCG
CAGGAACAATTGCAGGTGGATTTCTATCGTACTCTCCGGGAACGGTTCCA
CGATGGCCCGTATTACTCGATTCTGGAGGGGGCGGGGTCGACGATGAAGA
AGGATAGCGCGGCGCGGGTGAACTTCGATCCGTTTCATGGCATGCCTAGT
TATTCGGGCAAGTATCAGAAGAAGAAGAGGGCGTTGCCGAGGTTACAGGG
GAGACAGTATGTGATGAAGTTCTTCCCCCGGGAATTGTGGCAGACAATTC
AGCCGACGTTCAAGCCCGATGCCGCGATGGATGGGTACGTGCCGCAGGTG
GCGCGGGCCGGGGTGAAGCGGGGATTCGAGGACGATGATGAAGAGGAAGA
TGAGGATGCGGCGAAGCGGGCGAAGGCTGGTGGTGAGGAGGGTGAAGGAG
CTGAGGATGATGATGACGGGGACGGGGATATCCTGGATCCGGAGGAGGAG
CAAGAAGGGGAGGAGGAGATTGAAGATGATGACTTTGAGGATGATGATGA
TGAGATGGGTGGGGATTATAACGCTGAGCAGTACTTTGATGGTGGTGATG
ATGAGTATGGGGATGATGGGTTCGGAGATGGTGGTGGTGGAGGGGAGGAG
GATACTTATTAGATGTCCCGATTCGGCGCAAAGAAAGGCAGAAAGCTCCC
CGGAGCCGAATTCACTTGGGAGGCAGATCCCAGCGGAGAACCTGATACGG
CGCCGACGCCTTTGTTCCCGAAATACACCGTCCCCCGCGCCAGACCTCTC
ACCTCGCAGGAACAATTGCAGGTGGATTTCTATCGTACTCTCCGGGAACG
GTTCCACGATGGCCCGTATTACTCGATTCTGGAGGGGGCGGGGTCGACGA
TGAAGAAGGATAGCGCGGCGCGGGTGAACTTCGATCCGTTTCATGGCATG
CCTAGTTATTCGGGCAAGTATCAGAAGAAGAAGAGGGCGTTGCCGAGGTT
ACAGGGGAGACAGTATGTGATGAAGTTCTTCCCCCGGGAATTGTGGCAGA
CAATTCAGCCGACGTTCAAGCCCGATGCCGCGATGGATGGGTACGTGCCG
CAGGTGGCGCGGGCCGGGGTGAAGCGGGGATTCGAGGACGATGATGAAGA
GGAAGATGAGGATGCGGCGAAGCGGGCGAAGGCTGGTGGTGAGGAGGGTG
AAGGAGCTGAGGATGATGATGACGGGGACGGGGATATCCTGGATCCGGAG
GAGGAGCAAGAAGGGGAGGAGGAGATTGAAGATGATGACTTTGAGGATGA
TGATGATGAGATGGGTGGGGATTATAACGCTGAGCAGTACTTTGATGGTG
GTGATGATGAGTATGGGGATGATGGGTTCGGAGATGGTGGTGGTGGAGGG
GAGGAGGATACTTATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006383 | transcription by RNA polymerase III |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006827-T1.utr5p1 | KJC3_006827-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006827-T1.utr3p1 | KJC3_006827-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR024661 |
| DBxref | PFAM:PF11705 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:568371..569861 + |
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