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KJC3_006840-T1, KJC3_006840-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006840-T1
Unique NameKJC3_006840-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:601276..602502+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006840-T1 ID=KJC3_006840-T1|Name=KJC3_006840-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1227bp|location=Sequence derived from alignment at ch5:601276..602502+ (Aspergillus niger KJC3)
ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGA
GGTCGTCGAAGACCAACAACAAACCCAGCAACAAGAAAACGAAACAACAG
AAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA
AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACA
AGTCGACCCAGCGACAATCAAATCCGAGCCCCCACCCCAAGTCGGCACAA
TCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC
TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAG
CGGCTACACACGGGCCGATAAAGTGCCCGGGTCATACTTCTGCCTGTTCT
TCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT
TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACG
GGACAAGTTCAGTGACTATCGGGATGATATGGGTGGTGTAGGATCATTCA
TGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG
ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCG
GATTCGGGTGCTTACGTCCCGGGGTGTTGCGTTCGTGACGTATACAAATG
AGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT
CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTT
GGCGCAGAAGAGGGAGGCGAGACGGCTGGAAGAGCAGGCTGCTGAGGCGG
TTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT
CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGG
GTATGAGCCGCCGGATGAGGTGTGGTTCTCGCGTGCGAAGGAGTTGGAGG
ATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT
GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGG
AGGGATCTTCTCCAGCTCTGCTGTTGCGGCGTTGAAGGGCCTGGCTGGCG
GTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG
TACGGGAGTGACGATGATAGCGAGTAA
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Coding sequence (CDS) from alignment at ch5:601276..602502+

>KJC3_006840-T1 ID=KJC3_006840-T1|Name=KJC3_006840-T1|organism=Aspergillus niger KJC3|type=CDS|length=1227bp|location=Sequence derived from alignment at ch5:601276..602502+ (Aspergillus niger KJC3)
ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGA
GGTCGTCGAAGACCAACAACAAACCCAGCAACAAGAAAACGAAACAACAG
AAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA
AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACA
AGTCGACCCAGCGACAATCAAATCCGAGCCCCCACCCCAAGTCGGCACAA
TCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC
TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAG
CGGCTACACACGGGCCGATAAAGTGCCCGGGTCATACTTCTGCCTGTTCT
TCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT
TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACG
GGACAAGTTCAGTGACTATCGGGATGATATGGGTGGTGTAGGATCATTCA
TGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG
ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCG
GATTCGGGTGCTTACGTCCCGGGGTGTTGCGTTCGTGACGTATACAAATG
AGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT
CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTT
GGCGCAGAAGAGGGAGGCGAGACGGCTGGAAGAGCAGGCTGCTGAGGCGG
TTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT
CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGG
GTATGAGCCGCCGGATGAGGTGTGGTTCTCGCGTGCGAAGGAGTTGGAGG
ATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT
GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGG
AGGGATCTTCTCCAGCTCTGCTGTTGCGGCGTTGAAGGGCCTGGCTGGCG
GTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG
TACGGGAGTGACGATGATAGCGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CWC2KJC3_006840Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006840-T1.exon1KJC3_006840-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006840-T1.cdsKJC3_006840-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006840-T1KJC3_006840-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036855
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034181
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR032297
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00642
DBxrefPFAM:PF16131
DBxrefPFAM:PF00076
ProductPre-mRNA-splicing factor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:601276..602502 +
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