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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:788400..789735+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006898-T1 ID=KJC3_006898-T1|Name=KJC3_006898-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1336bp|location=Sequence derived from alignment at ch5:788400..789735+ (Aspergillus niger KJC3)
GCTTATGTAACCCATCTACCTCCAAACATGATTCCTATCACGTGTAGATA
AGATAACCCGCGCAACCCCTCGTCGGATTTCCACAAAACCGTGGGGGGAA
TGGATGGAGTTCATTCATTCACATCAGTACTAATCAGACATACGAAATCA
ATTGAGCAAGCCTTGTGGTGGAGAATCTCATCAAAATGACCAAATTTCGT
CCCTGCATTGATCTACACTCCGGCCAGGTGAAGCAGATAGTGGGCGGGAC
GTTGAGCAGTGTTGCAGCGGACCTGAAGACGAATTATGTGTCGAAGTTGC
CGGCCAGCCACTATGCGGAATTGTACAGGAAGAATGATTTGAGGGGTGGG
CATGTTGTTATGCTTGGGCCCGGGAACGATGAGGCTGCCAAGGAGGCGTT
GAGGACTTGGCCTGCTGGGTTGCAGGTTGCGGGGGGGATTACGGATAAGA
ATGCGAAGTATTGGATTGACATGGGAGCTGAGAAGGTTAGTTATTCCTTC
TAAGTTTGGATCTGTTGGTGTATATGGATGGCTGGGGGATGGATGGGGGT
TGGGTTGTTGGGTATTGCTTTGGCTGCGTGGTTGTGTGGTTCTTGCACAG
TATGATGGCTGATGTTGCAATTGCAGGTTATTATCACATCGTTCCTCTTC
CCGGAGGGCAAATTCTCCCTTGAGCGGCTACAGTCCGTTCTTGCTGCGCT
GGATGGTGATAGGTCTAAGCTGGTCTTGGATCTGAGCTGCAGGAAGAAGG
GTAATACGTGGTTTGTGGCTATGAATCGCTGGCAGACGATTACTGAGATG
GAGATCACTCAAGGTAAGCAATTCTAGCATTGAAATTGATGCTTTGTTAT
TGTGGTTTTGCTTGCTCTGTTGTTTACTACACATCCTCTTTCTTGCTCTG
CTGTCAGTCAGTGGCTCAGTACAACTAACAGAGGCAGAATCAATTGCACT
CTTGGAGCCCTACTGTTCCGAGTTCCTCATTCACGCTGCAGATGTCGAGG
GTCTGCAACAGGGCGTTGATGAGGAGCTCGTGTCCAAGCTGTCCCAGTGG
TGCACGATCCCTATCACCTATGCCGGAGGTGCTCGGAATCTTCAGGATCT
GGAGAAGGTTCACGTCAGCAGCCAAGGGAAGGTAGATTTGACGATTGGAA
GTGCGTTGGATATCTTTGGTGGTTCCGGGGTAACGTTTGATGAGTGTATA
GAATGGAACAAGGGGCACTAGGGCGTGGTTGTTGAATAACTGAACGAAAT
CGTGGTCAAAATTTTAGACATGAGACATGGCAGATGATGTATATATATTC
CAGTCAATACTCTGGACATGAATGAAACTAAAGTAT back to topCoding sequence (CDS) from alignment at ch5:788400..789735+ >KJC3_006898-T1 ID=KJC3_006898-T1|Name=KJC3_006898-T1|organism=Aspergillus niger KJC3|type=CDS|length=2313bp|location=Sequence derived from alignment at ch5:788400..789735+ (Aspergillus niger KJC3)
ATGACCAAATTTCGTCCCTGCATTGATCTACACTCCGGCCAGGTGAAGCA
GATAGTGGGCGGGACGTTGAGCAGTGTTGCAGCGGACCTGAAGACGAATT
ATGTGTCGAAGTTGCCGGCCAGCCACTATGCGGAATTGTACAGGAAGAAT
GATTTGAGGGGTGGGCATGTTGTTATGCTTGGGCCCGGGAACGATGAGGC
TGCCAAGGAGGCGTTGAGGACTTGGCCTGCTGGGTTGCAGGTTGCGGGGG
GGATTACGGATAAGAATGCGAAGTATTGGATTGACATGGGAGCTGAGAAG
GTTATTATCACATCGTTCCTCTTCCCGGAGGGCAAATTCTCCCTTGAGCG
GCTACAGTCCGTTCTTGCTGCGCTGGATGGTGATAGGTCTAAGCTGGTCT
TGGATCTGAGCTGCAGGAAGAAGGGTAATACGTGGTTTGTGGCTATGAAT
CGCTGGCAGACGATTACTGAGATGGAGATCACTCAAGAATCAATTGCACT
CTTGGAGCCCTACTGTTCCGAGTTCCTCATTCACGCTGCAGATGTCGAGG
GTCTGCAACAGGGCGTTGATGAGGAGCTCGTGTCCAAGCTGTCCCAGTGG
TGCACGATCCCTATCACCTATGCCGGAGGTGCTCGGAATCTTCAGGATCT
GGAGAAGGTTCACGTCAGCAGCCAAGGGAAGGTAGATTTGACGATTGGAA
GTGCGTTGGATATCTTTGGTGGTTCCGGGGTAACGTTTGATGAGTGTATA
GAATGGAACAAGGGGCACTAGATGACCAAATTTCGTCCCTGCATTGATCT
ACACTCCGGCCAGGTGAAGCAGATAGTGGGCGGGACGTTGAGCAGTGTTG
CAGCGGACCTGAAGACGAATTATGTGTCGAAGTTGCCGGCCAGCCACTAT
GCGGAATTGTACAGGAAGAATGATTTGAGGGGTGGGCATGTTGTTATGCT
TGGGCCCGGGAACGATGAGGCTGCCAAGGAGGCGTTGAGGACTTGGCCTG
CTGGGTTGCAGGTTGCGGGGGGGATTACGGATAAGAATGCGAAGTATTGG
ATTGACATGGGAGCTGAGAAGGTTATTATCACATCGTTCCTCTTCCCGGA
GGGCAAATTCTCCCTTGAGCGGCTACAGTCCGTTCTTGCTGCGCTGGATG
GTGATAGGTCTAAGCTGGTCTTGGATCTGAGCTGCAGGAAGAAGGGTAAT
ACGTGGTTTGTGGCTATGAATCGCTGGCAGACGATTACTGAGATGGAGAT
CACTCAAGAATCAATTGCACTCTTGGAGCCCTACTGTTCCGAGTTCCTCA
TTCACGCTGCAGATGTCGAGGGTCTGCAACAGGGCGTTGATGAGGAGCTC
GTGTCCAAGCTGTCCCAGTGGTGCACGATCCCTATCACCTATGCCGGAGG
TGCTCGGAATCTTCAGGATCTGGAGAAGGTTCACGTCAGCAGCCAAGGGA
AGGTAGATTTGACGATTGGAAGTGCGTTGGATATCTTTGGTGGTTCCGGG
GTAACGTTTGATGAGTGTATAGAATGGAACAAGGGGCACTAGATGACCAA
ATTTCGTCCCTGCATTGATCTACACTCCGGCCAGGTGAAGCAGATAGTGG
GCGGGACGTTGAGCAGTGTTGCAGCGGACCTGAAGACGAATTATGTGTCG
AAGTTGCCGGCCAGCCACTATGCGGAATTGTACAGGAAGAATGATTTGAG
GGGTGGGCATGTTGTTATGCTTGGGCCCGGGAACGATGAGGCTGCCAAGG
AGGCGTTGAGGACTTGGCCTGCTGGGTTGCAGGTTGCGGGGGGGATTACG
GATAAGAATGCGAAGTATTGGATTGACATGGGAGCTGAGAAGGTTATTAT
CACATCGTTCCTCTTCCCGGAGGGCAAATTCTCCCTTGAGCGGCTACAGT
CCGTTCTTGCTGCGCTGGATGGTGATAGGTCTAAGCTGGTCTTGGATCTG
AGCTGCAGGAAGAAGGGTAATACGTGGTTTGTGGCTATGAATCGCTGGCA
GACGATTACTGAGATGGAGATCACTCAAGAATCAATTGCACTCTTGGAGC
CCTACTGTTCCGAGTTCCTCATTCACGCTGCAGATGTCGAGGGTCTGCAA
CAGGGCGTTGATGAGGAGCTCGTGTCCAAGCTGTCCCAGTGGTGCACGAT
CCCTATCACCTATGCCGGAGGTGCTCGGAATCTTCAGGATCTGGAGAAGG
TTCACGTCAGCAGCCAAGGGAAGGTAGATTTGACGATTGGAAGTGCGTTG
GATATCTTTGGTGGTTCCGGGGTAACGTTTGATGAGTGTATAGAATGGAA
CAAGGGGCACTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003949 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000105 | histidine biosynthetic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006898-T1.utr5p1 | KJC3_006898-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006898-T1.utr3p1 | KJC3_006898-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092640IZ |
| DBxref | InterPro:IPR011060 |
| DBxref | InterPro:IPR011858 |
| DBxref | InterPro:IPR013785 |
| DBxref | InterPro:IPR006062 |
| DBxref | PFAM:PF00977 |
| Product | Histidine biosynthesis bifunctional protein hisB |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:788400..789735 + |
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