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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:863267..864562+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006919-T1 ID=KJC3_006919-T1|Name=KJC3_006919-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1296bp|location=Sequence derived from alignment at ch5:863267..864562+ (Aspergillus niger KJC3)
CACTTGTCGATCTGCTCGATATATTCCCAGCCTACAACCCATCAACCACA
AATGGAATCTTCAAACAGGGGAGTTCAGTATAAATCGGATTGTTTTTTTT
GTTTTTTGGATTTGGATCGAGAATCCGTGGATCTGAGCGACTCACCGCCC
ACGAGTAAGATCCCCGAGTCTAATTCAACTGATCAGCTAACCTTCTTCTC
CCCTTCTTTCCACCCCCCCGTCAGACCCGCCTCGATCTCCTTTCCTGGGG
CTTATCATCTTGAATCTCTATCGCCGGAAAGGAACATTTCAAGCCACCTC
TGCGACGCTCCAAGGATATATACTCTGTCCTCTTTTTAATCTGTTACTCT
TCCCTTGTCGGCACTATGGTTGTTTACTCCTTCTATATCTTCGATCGTCA
TGGTACCTCCCTCGCATCCATCTCTCCCTAGCCATTTCAATTGACGTTGC
TAACCACGTCTCTCCCTTTCTTCTAGCTGAATGCATCTATAATCGGCGCT
GGCTGCCACGCCCAACCTCCATGACAGGCAGCAAATCATCACGACCGACT
TCCGAGACATCTGCTCCGGGTCTCCCCGCAACATTAGGCCAAACTGCGCG
CGCCACGGACGACGATGCCAAGCTCATCTTCGGTACTGTTTTCTCCCTGC
GCAACATGGTTCGCAAGCTAGGAGGCGAGGACGACAAGTAAGGACTCCAC
CCTACAGCGACGAGGCAACTCAACTGGGAGGACAGTCATTGACCGCTCCG
CCACGTTTATAGCTTCGTTACCTACCGCACTAGCCAATACAAGCTCCATT
ACTACGAAACGCCGACCAATATCAAGTTCGTTATGCTGACGGACCTCAAG
AGTCCAAGCATGCGCGTTGCTTTGCAGCAGATCTATATCAATCTATACGT
CGAATACGGTACGCTCTGGCTAGTTTAAACGATAACCTCCTCTACAGCTG
TATGCTGACCACCTCTACTTCTAGTGGTCAAGAACCCGTTATCTCCCGCC
GAGCATCCAGGTGGCATTGGAGTGAACAATGAGCTCTTTGAAGAGTCTCT
GGAACAGTTTGTGGTATGTGCCATCAACGTCTCCTAGGCGGATGTAATCT
AACCTACAGCAGACTCGTGTTCTATCGTGAAACGGACTTGGATAGAGATG
AACACTCTGTTCGCTCATGGGTCTGAGTCGAACTGAGCCCCAGGCTTAAT
TGTCAAGCCACCACAAACAAGCATCCATGTGATAGCGGAACAGCCCGTCC
TGCATCCCTATGACCTCAGAGTGCCGTCGTGCGGCAACGGTCCGAT back to topCoding sequence (CDS) from alignment at ch5:863267..864562+ >KJC3_006919-T1 ID=KJC3_006919-T1|Name=KJC3_006919-T1|organism=Aspergillus niger KJC3|type=CDS|length=2505bp|location=Sequence derived from alignment at ch5:863267..864562+ (Aspergillus niger KJC3)
ATGGTTGTTTACTCCTTCTATATCTTCGATCGTCATGCTGAATGCATCTA
TAATCGGCGCTGGCTGCCACGCCCAACCTCCATGACAGGCAGCAAATCAT
CACGACCGACTTCCGAGACATCTGCTCCGGGTCTCCCCGCAACATTAGGC
CAAACTGCGCGCGCCACGGACGACGATGCCAAGCTCATCTTCGGTACTGT
TTTCTCCCTGCGCAACATGGTTCGCAAGCTAGGAGGCGAGGACGACAACT
TCGTTACCTACCGCACTAGCCAATACAAGCTCCATTACTACGAAACGCCG
ACCAATATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCATGCG
CGTTGCTTTGCAGCAGATCTATATCAATCTATACGTCGAATACGTGGTCA
AGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGGAGTGAACAAT
GAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGACTCGTGTTCTATCGTG
AATGGTTGTTTACTCCTTCTATATCTTCGATCGTCATGCTGAATGCATCT
ATAATCGGCGCTGGCTGCCACGCCCAACCTCCATGACAGGCAGCAAATCA
TCACGACCGACTTCCGAGACATCTGCTCCGGGTCTCCCCGCAACATTAGG
CCAAACTGCGCGCGCCACGGACGACGATGCCAAGCTCATCTTCGGTACTG
TTTTCTCCCTGCGCAACATGGTTCGCAAGCTAGGAGGCGAGGACGACAAC
TTCGTTACCTACCGCACTAGCCAATACAAGCTCCATTACTACGAAACGCC
GACCAATATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCATGC
GCGTTGCTTTGCAGCAGATCTATATCAATCTATACGTCGAATACGTGGTC
AAGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGGAGTGAACAA
TGAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGACTCGTGTTCTATCGT
GAATGGTTGTTTACTCCTTCTATATCTTCGATCGTCATGCTGAATGCATC
TATAATCGGCGCTGGCTGCCACGCCCAACCTCCATGACAGGCAGCAAATC
ATCACGACCGACTTCCGAGACATCTGCTCCGGGTCTCCCCGCAACATTAG
GCCAAACTGCGCGCGCCACGGACGACGATGCCAAGCTCATCTTCGGTACT
GTTTTCTCCCTGCGCAACATGGTTCGCAAGCTAGGAGGCGAGGACGACAA
CTTCGTTACCTACCGCACTAGCCAATACAAGCTCCATTACTACGAAACGC
CGACCAATATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCATG
CGCGTTGCTTTGCAGCAGATCTATATCAATCTATACGTCGAATACGTGGT
CAAGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGGAGTGAACA
ATGAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGACTCGTGTTCTATCG
TGAATGGTTGTTTACTCCTTCTATATCTTCGATCGTCATGCTGAATGCAT
CTATAATCGGCGCTGGCTGCCACGCCCAACCTCCATGACAGGCAGCAAAT
CATCACGACCGACTTCCGAGACATCTGCTCCGGGTCTCCCCGCAACATTA
GGCCAAACTGCGCGCGCCACGGACGACGATGCCAAGCTCATCTTCGGTAC
TGTTTTCTCCCTGCGCAACATGGTTCGCAAGCTAGGAGGCGAGGACGACA
ACTTCGTTACCTACCGCACTAGCCAATACAAGCTCCATTACTACGAAACG
CCGACCAATATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCAT
GCGCGTTGCTTTGCAGCAGATCTATATCAATCTATACGTCGAATACGTGG
TCAAGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGGAGTGAAC
AATGAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGACTCGTGTTCTATC
GTGAATGGTTGTTTACTCCTTCTATATCTTCGATCGTCATGCTGAATGCA
TCTATAATCGGCGCTGGCTGCCACGCCCAACCTCCATGACAGGCAGCAAA
TCATCACGACCGACTTCCGAGACATCTGCTCCGGGTCTCCCCGCAACATT
AGGCCAAACTGCGCGCGCCACGGACGACGATGCCAAGCTCATCTTCGGTA
CTGTTTTCTCCCTGCGCAACATGGTTCGCAAGCTAGGAGGCGAGGACGAC
AACTTCGTTACCTACCGCACTAGCCAATACAAGCTCCATTACTACGAAAC
GCCGACCAATATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCA
TGCGCGTTGCTTTGCAGCAGATCTATATCAATCTATACGTCGAATACGTG
GTCAAGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGGAGTGAA
CAATGAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGACTCGTGTTCTAT
CGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030008 | TRAPP complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016192 | vesicle-mediated transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006919-T1.utr3p1 | KJC3_006919-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011012 |
| DBxref | InterPro:IPR007233 |
| DBxref | PFAM:PF04099 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:863267..864562 + |
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