|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:889492..891618+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006927-T1 ID=KJC3_006927-T1|Name=KJC3_006927-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2127bp|location=Sequence derived from alignment at ch5:889492..891618+ (Aspergillus niger KJC3)
AACTTATCTCTTCCCTGAGCCATTCGGATAACAATTACTTCCTTCGGGGA
TTGCACTCCATCCATCCCCCGGGATCCAACCCGCCCAACATGTCTCCCTC
CATTCCCTCGGCCAAACTGACTCTCTCATGCCCGCTCTTCGCCGCCGACT
TCGACCCGCGTCATCACGGCTTGCTTCTGGTCGGTGGAGGAGGTGGTGAA
GGCCGCAGTGGCGTCGGCAACAAAATCGCAAGTTCCGCCCTGGTCAAGAT
GATGCATTATGCAGCTCCATGCTAACACATCAATTCCCCAGGCCCTCTTG
AATACCTCCAAGCGCTCCGAGATCTCCGAAGTCGTCGACATCAACTTGTC
GCGAGACGAGGACTCAGTCACTTCTCTCGCCGCCGTCCAGGCTGACGATG
AGGCCATCGTCGCCCTCGCCGGTATCAACAGCTCCGTGGCAGAGCAAAAG
CGCGGCAACAACCAACATCTGCGTTCCTTTCGCATTGATCATCCCACCCG
GAAAGAGAAGGACAACAACAAGGAGAATGAGAAGAAGACAACGAACAATG
GACAAACCACTGCGCTTTCACGAACATCACTTTTCCGCACCGTGAAAGCT
TCCGCCTCCTCCGCTGCTTCTCCCGACACCTACCAGCGCACCCTGCGCCT
CTCCCCCTGGCAATCCGACTCAACTTCCCCGCGAGTCGCTGCCATCGCTA
CCGGCCTTGCCCCGGCCGGCGAGATCGTCTTCTTCAGCGCGACTCCCACC
CCCAGTCCATCCGACGTGATCGGACGCATCCGTCTCAACAGCGATGAGGA
AGCCGAGGACGTTGATCTCATCCCCCTCCCCGACAACAAGGGCCAATTCC
GCGTCGCCTACACCAACGGCATCGACATCTGCATCTGCACCATCTCCGCC
GACACGCGCTCCAACGCTTCCCCCGACATACAATGCGTCTACACCACCCC
CATCCCCGACAAGGGATCCCCCCGGATGCGCCCCAAATTCCGCGCCCTTC
GCTTCCTCTCCTCCACCAGCCTCCTTCTCCTCCAAAACGCCCCAGACCGC
AAGGGCTGTGAGCTCGTCCTACTAGACCTCCGCCCCGCCATCATCACCTC
CGCCATAGCCACCGCCCCCACCAAAGAAGCAACAACCAAAGGCGCCAAAG
CATCCATCCTCCGCCGCAAGAAGCTCCGCAAAACCATCAAGATCGGCCTC
GGCCTCGACACCTGCCTTCTCAGCCCCGACCCCACCACAAACCAACAACA
AGCCGTCATCGCCATCTCCGGCAGCGACCAATCCATCGAGCTCCTCACCC
TTGAATTCAACCCCTCCACAAACCGCTACAACTCTTTCCAATCCTACACC
TCCCTCCGCGACGTCCACCCCTTCGCCATGACCAAGCTCTGCTTCTCCCG
CTTCCAATCCCCATCTCTCCCCGTCTCCCCCGAAACTCCCCCGCAATACA
TCAAACTCGCCTCCGTCAGCATGGGCAACACCGTCGTCGTCCATACCCTC
CCCTTATCCCCATGCCCCCCGACAAGCCGCTCCCCGCGCTACGTCCTCTC
CATGCCCGGCGATTCCGAGATTTGGACAAACCTCACCTCCAGCTTCGCTG
CCATCCTCTCCATCCTCACCGTCTGCTTCATCCTCCAGGCCTTCACCGAG
ATCCGTGGCGCCATGCCTCCTTACCTCGGCGCGAAGGACTGGTTACCGCC
GAGTATCCGCGATGCTGTCGCTGTCCCTTATGATCCTTTTACCCCTTCGT
CTTCTTCGTCCATTTCTTCTCCTAGTTCTACTCCCGTCCCTGAAGTGGAA
TACCCTGCGCAAATCCGTTCACTGAACGATATACTACACTCTTCGGAGAA
TCTGCAGCAACAGCAGCGTCAATCGCTCTTAATAAACTGCAACCCGGAGA
CGAATACCCTCCGCATTGACTCGACTGATCCATCTTCTGCATCAGAAACT
GGTTCAGGTATCCATACATGGGAAGATCTCTCCGAGGAGACTCGACACCG
GTGGATCAGTCAGCTCACGCAAGCGGGGTATGAGCCATCTGGTGAAGATG
ATGATGTGGAGTCGCTTTTCAAGGGAGTGCGGTTTGGGGATTTGTGCACG
GAAGTGCCCATTCATGAGGAGTTGTGA back to topCoding sequence (CDS) from alignment at ch5:889492..891618+ >KJC3_006927-T1 ID=KJC3_006927-T1|Name=KJC3_006927-T1|organism=Aspergillus niger KJC3|type=CDS|length=3948bp|location=Sequence derived from alignment at ch5:889492..891618+ (Aspergillus niger KJC3)
ATGTCTCCCTCCATTCCCTCGGCCAAACTGACTCTCTCATGCCCGCTCTT
CGCCGCCGACTTCGACCCGCGTCATCACGGCTTGCTTCTGGTCGGTGGAG
GAGGTGGTGAAGGCCGCAGTGGCGTCGGCAACAAAATCGCCCTCTTGAAT
ACCTCCAAGCGCTCCGAGATCTCCGAAGTCGTCGACATCAACTTGTCGCG
AGACGAGGACTCAGTCACTTCTCTCGCCGCCGTCCAGGCTGACGATGAGG
CCATCGTCGCCCTCGCCGGTATCAACAGCTCCGTGGCAGAGCAAAAGCGC
GGCAACAACCAACATCTGCGTTCCTTTCGCATTGATCATCCCACCCGGAA
AGAGAAGGACAACAACAAGGAGAATGAGAAGAAGACAACGAACAATGGAC
AAACCACTGCGCTTTCACGAACATCACTTTTCCGCACCGTGAAAGCTTCC
GCCTCCTCCGCTGCTTCTCCCGACACCTACCAGCGCACCCTGCGCCTCTC
CCCCTGGCAATCCGACTCAACTTCCCCGCGAGTCGCTGCCATCGCTACCG
GCCTTGCCCCGGCCGGCGAGATCGTCTTCTTCAGCGCGACTCCCACCCCC
AGTCCATCCGACGTGATCGGACGCATCCGTCTCAACAGCGATGAGGAAGC
CGAGGACGTTGATCTCATCCCCCTCCCCGACAACAAGGGCCAATTCCGCG
TCGCCTACACCAACGGCATCGACATCTGCATCTGCACCATCTCCGCCGAC
ACGCGCTCCAACGCTTCCCCCGACATACAATGCGTCTACACCACCCCCAT
CCCCGACAAGGGATCCCCCCGGATGCGCCCCAAATTCCGCGCCCTTCGCT
TCCTCTCCTCCACCAGCCTCCTTCTCCTCCAAAACGCCCCAGACCGCAAG
GGCTGTGAGCTCGTCCTACTAGACCTCCGCCCCGCCATCATCACCTCCGC
CATAGCCACCGCCCCCACCAAAGAAGCAACAACCAAAGGCGCCAAAGCAT
CCATCCTCCGCCGCAAGAAGCTCCGCAAAACCATCAAGATCGGCCTCGGC
CTCGACACCTGCCTTCTCAGCCCCGACCCCACCACAAACCAACAACAAGC
CGTCATCGCCATCTCCGGCAGCGACCAATCCATCGAGCTCCTCACCCTTG
AATTCAACCCCTCCACAAACCGCTACAACTCTTTCCAATCCTACACCTCC
CTCCGCGACGTCCACCCCTTCGCCATGACCAAGCTCTGCTTCTCCCGCTT
CCAATCCCCATCTCTCCCCGTCTCCCCCGAAACTCCCCCGCAATACATCA
AACTCGCCTCCGTCAGCATGGGCAACACCGTCGTCGTCCATACCCTCCCC
TTATCCCCATGCCCCCCGACAAGCCGCTCCCCGCGCTACGTCCTCTCCAT
GCCCGGCGATTCCGAGATTTGGACAAACCTCACCTCCAGCTTCGCTGCCA
TCCTCTCCATCCTCACCGTCTGCTTCATCCTCCAGGCCTTCACCGAGATC
CGTGGCGCCATGCCTCCTTACCTCGGCGCGAAGGACTGGTTACCGCCGAG
TATCCGCGATGCTGTCGCTGTCCCTTATGATCCTTTTACCCCTTCGTCTT
CTTCGTCCATTTCTTCTCCTAGTTCTACTCCCGTCCCTGAAGTGGAATAC
CCTGCGCAAATCCGTTCACTGAACGATATACTACACTCTTCGGAGAATCT
GCAGCAACAGCAGCGTCAATCGCTCTTAATAAACTGCAACCCGGAGACGA
ATACCCTCCGCATTGACTCGACTGATCCATCTTCTGCATCAGAAACTGGT
TCAGGTATCCATACATGGGAAGATCTCTCCGAGGAGACTCGACACCGGTG
GATCAGTCAGCTCACGCAAGCGGGGTATGAGCCATCTGGTGAAGATGATG
ATGTGGAGTCGCTTTTCAAGGGAGTGCGGTTTGGGGATTTGTGCACGGAA
GTGCCCATTCATGAGGAGTTGTGAATGTCTCCCTCCATTCCCTCGGCCAA
ACTGACTCTCTCATGCCCGCTCTTCGCCGCCGACTTCGACCCGCGTCATC
ACGGCTTGCTTCTGGTCGGTGGAGGAGGTGGTGAAGGCCGCAGTGGCGTC
GGCAACAAAATCGCCCTCTTGAATACCTCCAAGCGCTCCGAGATCTCCGA
AGTCGTCGACATCAACTTGTCGCGAGACGAGGACTCAGTCACTTCTCTCG
CCGCCGTCCAGGCTGACGATGAGGCCATCGTCGCCCTCGCCGGTATCAAC
AGCTCCGTGGCAGAGCAAAAGCGCGGCAACAACCAACATCTGCGTTCCTT
TCGCATTGATCATCCCACCCGGAAAGAGAAGGACAACAACAAGGAGAATG
AGAAGAAGACAACGAACAATGGACAAACCACTGCGCTTTCACGAACATCA
CTTTTCCGCACCGTGAAAGCTTCCGCCTCCTCCGCTGCTTCTCCCGACAC
CTACCAGCGCACCCTGCGCCTCTCCCCCTGGCAATCCGACTCAACTTCCC
CGCGAGTCGCTGCCATCGCTACCGGCCTTGCCCCGGCCGGCGAGATCGTC
TTCTTCAGCGCGACTCCCACCCCCAGTCCATCCGACGTGATCGGACGCAT
CCGTCTCAACAGCGATGAGGAAGCCGAGGACGTTGATCTCATCCCCCTCC
CCGACAACAAGGGCCAATTCCGCGTCGCCTACACCAACGGCATCGACATC
TGCATCTGCACCATCTCCGCCGACACGCGCTCCAACGCTTCCCCCGACAT
ACAATGCGTCTACACCACCCCCATCCCCGACAAGGGATCCCCCCGGATGC
GCCCCAAATTCCGCGCCCTTCGCTTCCTCTCCTCCACCAGCCTCCTTCTC
CTCCAAAACGCCCCAGACCGCAAGGGCTGTGAGCTCGTCCTACTAGACCT
CCGCCCCGCCATCATCACCTCCGCCATAGCCACCGCCCCCACCAAAGAAG
CAACAACCAAAGGCGCCAAAGCATCCATCCTCCGCCGCAAGAAGCTCCGC
AAAACCATCAAGATCGGCCTCGGCCTCGACACCTGCCTTCTCAGCCCCGA
CCCCACCACAAACCAACAACAAGCCGTCATCGCCATCTCCGGCAGCGACC
AATCCATCGAGCTCCTCACCCTTGAATTCAACCCCTCCACAAACCGCTAC
AACTCTTTCCAATCCTACACCTCCCTCCGCGACGTCCACCCCTTCGCCAT
GACCAAGCTCTGCTTCTCCCGCTTCCAATCCCCATCTCTCCCCGTCTCCC
CCGAAACTCCCCCGCAATACATCAAACTCGCCTCCGTCAGCATGGGCAAC
ACCGTCGTCGTCCATACCCTCCCCTTATCCCCATGCCCCCCGACAAGCCG
CTCCCCGCGCTACGTCCTCTCCATGCCCGGCGATTCCGAGATTTGGACAA
ACCTCACCTCCAGCTTCGCTGCCATCCTCTCCATCCTCACCGTCTGCTTC
ATCCTCCAGGCCTTCACCGAGATCCGTGGCGCCATGCCTCCTTACCTCGG
CGCGAAGGACTGGTTACCGCCGAGTATCCGCGATGCTGTCGCTGTCCCTT
ATGATCCTTTTACCCCTTCGTCTTCTTCGTCCATTTCTTCTCCTAGTTCT
ACTCCCGTCCCTGAAGTGGAATACCCTGCGCAAATCCGTTCACTGAACGA
TATACTACACTCTTCGGAGAATCTGCAGCAACAGCAGCGTCAATCGCTCT
TAATAAACTGCAACCCGGAGACGAATACCCTCCGCATTGACTCGACTGAT
CCATCTTCTGCATCAGAAACTGGTTCAGGTATCCATACATGGGAAGATCT
CTCCGAGGAGACTCGACACCGGTGGATCAGTCAGCTCACGCAAGCGGGGT
ATGAGCCATCTGGTGAAGATGATGATGTGGAGTCGCTTTTCAAGGGAGTG
CGGTTTGGGGATTTGTGCACGGAAGTGCCCATTCATGAGGAGTTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006927-T1.utr5p1 | KJC3_006927-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR015943 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:889492..891618 + |
|
