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KJC3_006969-T1, KJC3_006969-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006969-T1
Unique NameKJC3_006969-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:997454..998706-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006969-T1 ID=KJC3_006969-T1|Name=KJC3_006969-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1253bp|location=Sequence derived from alignment at ch5:997454..998706- (Aspergillus niger KJC3)
AAGTGCTACACGATTAACAAAGTTTGACCACTGAGGCCTCTAACAAACTG
TTGGGTTCGTGCTTAGATACCTGTTAATGACCTCGAGAAGCCTATATCTT
TGTGCGCAATCATCTCTAATTCATTGATCAACTTCTGCAAGCATTACCTT
ATATCTTATAGCCACTTTCCCGCTCCGTATTCTAAAAGATGCCTAGTGCA
CCGAAGCAGCGCAAAATAGCTATTGTTGGCAGTCGCTCTGTGGGTATGGC
CTCCTATCTCTATGAAAAGCCTTGCTTGTTTGGTTTACTCATACTCACTA
AATCTTTTCCAGGTAAATCTTCTCTTACAGTTCGATTTGTTGAACATCAT
TTTGTAGAAAGCTACTATCCAACGATCGAAAACACTTTCAGTCGAATCAT
CAAATACAACGGCCAAGATTATGCCACTGAAATCGTTGACACAGCTGGTC
AGGTATGGAGAAAATCTGACCCTGATCCTAGAGTTTCCGGTATATGGCTA
ATACTGCTGTAGGACGAGTACAGTATATTGAACTCCAAGCATTTCATCGG
AATACATGGGTATATTATTGTCTACTCGGTGGCTTCACGCCAGTCGTTCG
ACATGGTGAGGGTCATACGTGACAAGATTCTGAACCATCTTGTGAGTATC
TCATTTGTACCTTGCAGCCACCATAGTCGCTGACATGAAATAAGGGTGCC
GATCATGTACCCCTTGTGCTTGTCGGAAATAAAAGCGATCTCAAATCTGA
GCAACGCCAGGTGTCTCTAGATGAAGGCCGGCAGCTTTGTGAAGAATTCC
ATTGTGCATTTACTGAGGCTAGTGCTCGTCTCGACTATAATGTTGCGAAA
GCGTTTGACTTAATGATCGGGGAAATCGAAAAGTCGCAAAACCCATCACA
GCCGGCAGGAGGCAACAAATGCGCTGTAATGTGATAAGGCTTATGATGTA
GCAGGTTAGGTATCTAGCCTGGTTGGCCTAGAGAATGGCTACGTCTCGTT
TGGATATCATTTTTCTTTTTCGGAGAGGCAACATAGCTGTTGATTAGCCT
AGGTTGTTGTATTTCTGGGAGACGTTTTTTGCAGCTCTTCACTGGTGCAG
CTGTGATTCTTTCGGCACTCGATTTGCCAATTACTGTCTTTGTTACATAA
TCTAATAAATACACAGTAGCTTAGCTTTCAAGACATGAGAGATATGATGG
TATCGATTCCTATAACAAGGGAAGGTGTTAGAGGGCAGATTATAGACAGC
CGA
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Coding sequence (CDS) from alignment at ch5:997454..998706-

>KJC3_006969-T1 ID=KJC3_006969-T1|Name=KJC3_006969-T1|organism=Aspergillus niger KJC3|type=CDS|length=2256bp|location=Sequence derived from alignment at ch5:997454..998706- (Aspergillus niger KJC3)
GGTGCCGATCATGTACCCCTTGTGCTTGTCGGAAATAAAAGCGATCTCAA
ATCTGAGCAACGCCAGGTGTCTCTAGATGAAGGCCGGCAGCTTTGTGAAG
AATTCCATTGTGCATTTACTGAGGCTAGTGCTCGTCTCGACTATAATGTT
GCGAAAGCGTTTGACTTAATGATCGGGGAAATCGAAAAGTCGCAAAACCC
ATCACAGCCGGCAGGAGGCAACAAATGCGCTGTAATGTGAGACGAGTACA
GTATATTGAACTCCAAGCATTTCATCGGAATACATGGGTATATTATTGTC
TACTCGGTGGCTTCACGCCAGTCGTTCGACATGGTGAGGGTCATACGTGA
CAAGATTCTGAACCATCTTGTAAATCTTCTCTTACAGTTCGATTTGTTGA
ACATCATTTTGTAGAAAGCTACTATCCAACGATCGAAAACACTTTCAGTC
GAATCATCAAATACAACGGCCAAGATTATGCCACTGAAATCGTTGACACA
GCTGGTCAGATGCCTAGTGCACCGAAGCAGCGCAAAATAGCTATTGTTGG
CAGTCGCTCTGTGGGGTGCCGATCATGTACCCCTTGTGCTTGTCGGAAAT
AAAAGCGATCTCAAATCTGAGCAACGCCAGGTGTCTCTAGATGAAGGCCG
GCAGCTTTGTGAAGAATTCCATTGTGCATTTACTGAGGCTAGTGCTCGTC
TCGACTATAATGTTGCGAAAGCGTTTGACTTAATGATCGGGGAAATCGAA
AAGTCGCAAAACCCATCACAGCCGGCAGGAGGCAACAAATGCGCTGTAAT
GTGAGACGAGTACAGTATATTGAACTCCAAGCATTTCATCGGAATACATG
GGTATATTATTGTCTACTCGGTGGCTTCACGCCAGTCGTTCGACATGGTG
AGGGTCATACGTGACAAGATTCTGAACCATCTTGTAAATCTTCTCTTACA
GTTCGATTTGTTGAACATCATTTTGTAGAAAGCTACTATCCAACGATCGA
AAACACTTTCAGTCGAATCATCAAATACAACGGCCAAGATTATGCCACTG
AAATCGTTGACACAGCTGGTCAGATGCCTAGTGCACCGAAGCAGCGCAAA
ATAGCTATTGTTGGCAGTCGCTCTGTGGGGTGCCGATCATGTACCCCTTG
TGCTTGTCGGAAATAAAAGCGATCTCAAATCTGAGCAACGCCAGGTGTCT
CTAGATGAAGGCCGGCAGCTTTGTGAAGAATTCCATTGTGCATTTACTGA
GGCTAGTGCTCGTCTCGACTATAATGTTGCGAAAGCGTTTGACTTAATGA
TCGGGGAAATCGAAAAGTCGCAAAACCCATCACAGCCGGCAGGAGGCAAC
AAATGCGCTGTAATGTGAGACGAGTACAGTATATTGAACTCCAAGCATTT
CATCGGAATACATGGGTATATTATTGTCTACTCGGTGGCTTCACGCCAGT
CGTTCGACATGGTGAGGGTCATACGTGACAAGATTCTGAACCATCTTGTA
AATCTTCTCTTACAGTTCGATTTGTTGAACATCATTTTGTAGAAAGCTAC
TATCCAACGATCGAAAACACTTTCAGTCGAATCATCAAATACAACGGCCA
AGATTATGCCACTGAAATCGTTGACACAGCTGGTCAGATGCCTAGTGCAC
CGAAGCAGCGCAAAATAGCTATTGTTGGCAGTCGCTCTGTGGGGTGCCGA
TCATGTACCCCTTGTGCTTGTCGGAAATAAAAGCGATCTCAAATCTGAGC
AACGCCAGGTGTCTCTAGATGAAGGCCGGCAGCTTTGTGAAGAATTCCAT
TGTGCATTTACTGAGGCTAGTGCTCGTCTCGACTATAATGTTGCGAAAGC
GTTTGACTTAATGATCGGGGAAATCGAAAAGTCGCAAAACCCATCACAGC
CGGCAGGAGGCAACAAATGCGCTGTAATGTGAGACGAGTACAGTATATTG
AACTCCAAGCATTTCATCGGAATACATGGGTATATTATTGTCTACTCGGT
GGCTTCACGCCAGTCGTTCGACATGGTGAGGGTCATACGTGACAAGATTC
TGAACCATCTTGTAAATCTTCTCTTACAGTTCGATTTGTTGAACATCATT
TTGTAGAAAGCTACTATCCAACGATCGAAAACACTTTCAGTCGAATCATC
AAATACAACGGCCAAGATTATGCCACTGAAATCGTTGACACAGCTGGTCA
GATGCCTAGTGCACCGAAGCAGCGCAAAATAGCTATTGTTGGCAGTCGCT
CTGTGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RHB1KJC3_006969Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006969-T1KJC3_006969-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006969-T1.cdsKJC3_006969-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006969-T1.utr3p1KJC3_006969-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006969-T1.exon4KJC3_006969-T1.exon4Aspergillus niger KJC3exon
KJC3_006969-T1.exon3KJC3_006969-T1.exon3Aspergillus niger KJC3exon
KJC3_006969-T1.exon2KJC3_006969-T1.exon2Aspergillus niger KJC3exon
KJC3_006969-T1.exon1KJC3_006969-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006969-T1.utr5p1KJC3_006969-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR020849
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR001806
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF00025
ProductGTP-binding protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:997454..998706 -
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