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KJC3_006973-T1, KJC3_006973-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006973-T1
Unique NameKJC3_006973-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:1006178..1008306+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006973-T1 ID=KJC3_006973-T1|Name=KJC3_006973-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2129bp|location=Sequence derived from alignment at ch5:1006178..1008306+ (Aspergillus niger KJC3)
CGATTTCTACATTCATCCCGCGATCGAGCAGCAAGCAGCAAGCAGCGACA
ATCGATTCGACTCACCTCCACCAGAGCGTGTGGTGTGATATCCTAGTCTG
TCTTCAAGCCGCGCAAGATAGACACGAGTCGCAAATATGGCCGTTGGAAA
GTACGTGAATGCCCTACTCTATTATGATTTATGTTGCAGCAATTCGATTG
TAGTAGTCTCTTACTGATTTTATGGCAGGAACAAGCGCTTGTCGAAGGGC
AAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGA
GTACTCTGTGAAGGTAAGTGTGCAACTTGAGGGTGTGTGGATTTTGCTGA
CAGGAATAGGCTCCCTCGACCTTCCAGACCAGAGAGTATGGCATCGCCCC
TCCCCCCCAAATTTCGTCGTCGGGACTTTCAGATATTCTTTCGCCTCGTT
ATAATTATTTTTTGTCGCATTCCCCATGTGCAAACCAGTCACTGACCAGT
TCTTGTTGAAGTGTTGGAAAGACTCTGGTGAACCGTACCAGTGGTCTGAA
GAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCG
ACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTCCGCGTG
GACGAAATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCTGGATTT
CACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGCTGATTG
AAGCCAACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGTCTGTTC
GCCATCGCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGACTACATA
TGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCGAGATCA
TGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACCAAGTTG
ATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGGAATTTA
CCCCCTGCAGAACGTTCGTCCCCCTCGACCCTCGTATTCTATCAAATGAT
TGCGATCCATCTAATACTCTATTAGGTCCACATTCGCAAGGTCAAGCTTC
TTAAGTCCCCCAAGTTCGACCTCGGTGCCCTCCTTAACTTGCACGGCGAG
TCTACAACCGATGATAAGGGACACAAGGTTGAGAGAGAGTTCAAGGAACA
GGTTCTTGAGAGCGTGTAAGCTTTAGCTATCCGCTGGTCATGGATTCTGG
TTGCTCTGCCGTCTTGGGTTCACGGTGCCACTGCTCCAAGTATGATAAGT
TTATGTCAAAAGTAGTGTCATTAGCCAACAAATGACAGTATATGCAAGTT
TTTCACAACGCCTTTGAGCTTTTAACTAGGCCTCGTCGTTGGGACGGTTA
CATATTATTCTTGCGTGAAGCAGAAGGGTAGATATCTTATATGGTTTGTT
CAATACCTGGCTGATAGTTATCCCTCCTGGTCGTTGACAAATTGTAGGTA
ACGTGAAATCAAGATACATGTGGTTAGCGGCTTCTTCTCGCTGTAGGACT
TGTGCGTTCACTATAGGATAACCTTGTACTTATCATATTATAGGCCCCAC
CTCTGCCTTTTCGTAGAGCGTATTACATGTATATCACACGAGCGTTGGTG
CAGAGCATGTGAAAGGTCGGCCCAGGCTTGGAGAAAATGAAGCTGGGCAG
TAAGGTGTTAGCACTCCGATGTCATACAGTTATCGCTATTTAATGCAGCT
TATATACCTGGGGCTTTTCCCACTGCCAAGAGGCACTGTAGAATCGACCT
CCCACCCGCCACATTCCTCAGCTCTGCATTTCGGGGCTCTGTATGAACCT
CGAGAACCACTTTTAGATGTAAAGTCGACTGTAGGTGCGCTTGCTGGAGG
TCTCCTACCTCCGCCCCCTCCCCTAGATTGTCTCGCAACAGACTGAGTTA
CTGGGCCACACTGGCTCAGACGCACACATATTATCGGCTTGGCCTTGGAG
GCCTTCAAGCCTCGCGGTGACAAGCACGGACAACCCTAAGGGCTGTGACT
TTACATTATCTCTTGATACGCTCGAGGTCTCTCTGATGTGATCGTACCCT
TACTTTGTCATTTGTATCTCCTCCCTTCC
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Coding sequence (CDS) from alignment at ch5:1006178..1008306+

>KJC3_006973-T1 ID=KJC3_006973-T1|Name=KJC3_006973-T1|organism=Aspergillus niger KJC3|type=CDS|length=3855bp|location=Sequence derived from alignment at ch5:1006178..1008306+ (Aspergillus niger KJC3)
ATGGCCGTTGGAAAGAACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAA
GAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGAGTACTCTGTGAAGG
CTCCCTCGACCTTCCAGACCAGAGATGTTGGAAAGACTCTGGTGAACCGT
ACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGA
AGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGG
TCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTC
CACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTG
GCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATC
TTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATC
AAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAA
GATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGC
TTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCT
ACCCAGGGAATTTACCCCCTGCAGAACGTCCACATTCGCAAGGTCAAGCT
TCTTAAGTCCCCCAAGTTCGACCTCGGTGCCCTCCTTAACTTGCACGGCG
AGTCTACAACCGATGATAAGGGACACAAGGTTGAGAGAGAGTTCAAGGAA
CAGGTTCTTGAGAGCGTGTAAATGGCCGTTGGAAAGAACAAGCGCTTGTC
GAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGA
AAGACGAGTACTCTGTGAAGGCTCCCTCGACCTTCCAGACCAGAGATGTT
GGAAAGACTCTGGTGAACCGTACCAGTGGTCTGAAGAACGCGAACGATTC
CCTGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCGACTTGCAGAATGACG
AGGACCATGCCTTCCGTAAGGTCAAGCTCCGCGTGGACGAAATCCAGGGA
AAGAACTGCCTGACCAACTTCCACGGTCTGGATTTCACGACCGACAAGCT
GCGATCCCTTGTGCGCAAGTGGCAGTCGCTGATTGAAGCCAACGTCACTG
TGAAGACGACCGATGACTATCTTCTCCGTCTGTTCGCCATCGCCTTCACG
AAGAGACGCCCCAACCAAATCAAGAAGACTACATATGCTCGCTCGTCCCA
AATCCGCGCTATTCGCAAGAAGATGACCGAGATCATGCAGCGCGAGGCCG
CTAGCTGCTCTCTCGCTCAGCTTACTACCAAGTTGATCCCCGAAGTCATC
GGTCGTGAGATTGAGAAGGCTACCCAGGGAATTTACCCCCTGCAGAACGT
CCACATTCGCAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGTG
CCCTCCTTAACTTGCACGGCGAGTCTACAACCGATGATAAGGGACACAAG
GTTGAGAGAGAGTTCAAGGAACAGGTTCTTGAGAGCGTGTAAATGGCCGT
TGGAAAGAACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAA
CTGTCGACCCTTTCACCCGGAAAGACGAGTACTCTGTGAAGGCTCCCTCG
ACCTTCCAGACCAGAGATGTTGGAAAGACTCTGGTGAACCGTACCAGTGG
TCTGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCC
TTGCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTC
CGCGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCT
GGATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGC
TGATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGT
CTGTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGAC
TACATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCG
AGATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACC
AAGTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGG
AATTTACCCCCTGCAGAACGTCCACATTCGCAAGGTCAAGCTTCTTAAGT
CCCCCAAGTTCGACCTCGGTGCCCTCCTTAACTTGCACGGCGAGTCTACA
ACCGATGATAAGGGACACAAGGTTGAGAGAGAGTTCAAGGAACAGGTTCT
TGAGAGCGTGTAAATGGCCGTTGGAAAGAACAAGCGCTTGTCGAAGGGCA
AGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGAG
TACTCTGTGAAGGCTCCCTCGACCTTCCAGACCAGAGATGTTGGAAAGAC
TCTGGTGAACCGTACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGG
GCCGTATCTTCGAAGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCAT
GCCTTCCGTAAGGTCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTG
CCTGACCAACTTCCACGGTCTGGATTTCACGACCGACAAGCTGCGATCCC
TTGTGCGCAAGTGGCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACG
ACCGATGACTATCTTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACG
CCCCAACCAAATCAAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCG
CTATTCGCAAGAAGATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGC
TCTCTCGCTCAGCTTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGA
GATTGAGAAGGCTACCCAGGGAATTTACCCCCTGCAGAACGTCCACATTC
GCAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGTGCCCTCCTT
AACTTGCACGGCGAGTCTACAACCGATGATAAGGGACACAAGGTTGAGAG
AGAGTTCAAGGAACAGGTTCTTGAGAGCGTGTAAATGGCCGTTGGAAAGA
ACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGAC
CCTTTCACCCGGAAAGACGAGTACTCTGTGAAGGCTCCCTCGACCTTCCA
GACCAGAGATGTTGGAAAGACTCTGGTGAACCGTACCAGTGGTCTGAAGA
ACGCGAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCGAC
TTGCAGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTCCGCGTGGA
CGAAATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCTGGATTTCA
CGACCGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGCTGATTGAA
GCCAACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGTCTGTTCGC
CATCGCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGACTACATATG
CTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCGAGATCATG
CAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACCAAGTTGAT
CCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGGAATTTACC
CCCTGCAGAACGTCCACATTCGCAAGGTCAAGCTTCTTAAGTCCCCCAAG
TTCGACCTCGGTGCCCTCCTTAACTTGCACGGCGAGTCTACAACCGATGA
TAAGGGACACAAGGTTGAGAGAGAGTTCAAGGAACAGGTTCTTGAGAGCG
TGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS1_1KJC3_006973Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006973-T1KJC3_006973-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006973-T1.utr5p1KJC3_006973-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006973-T1.exon1KJC3_006973-T1.exon1Aspergillus niger KJC3exon
KJC3_006973-T1.exon2KJC3_006973-T1.exon2Aspergillus niger KJC3exon
KJC3_006973-T1.exon3KJC3_006973-T1.exon3Aspergillus niger KJC3exon
KJC3_006973-T1.exon4KJC3_006973-T1.exon4Aspergillus niger KJC3exon
KJC3_006973-T1.exon5KJC3_006973-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006973-T1.cdsKJC3_006973-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006973-T1.utr3p1KJC3_006973-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027500
DBxrefInterPro:IPR018281
DBxrefInterPro:IPR001593
DBxrefPFAM:PF01015
Productribosomal 40S subunit protein S1B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:1006178..1008306 +
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