|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:1296497..1299104+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007044-T1 ID=KJC3_007044-T1|Name=KJC3_007044-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2608bp|location=Sequence derived from alignment at ch5:1296497..1299104+ (Aspergillus niger KJC3)
CTTCGTTCCCGAGTCTAAAGCCAGCCGAATCGTGGTCTGGAGGGATTCAC
CTTCCTCTAACCCTCCCCCCTCCTTCCCATCATGTCCTCGGCTATGCAAC
AGCGCAAGGCCGAGATCCTTGCCAAGAGAGCCAAACTCGCCGAACTGAAG
CGGCAGAGAGAGCTGCGGCAGAAGGAATTCTCGCAAACCCGAGCTAACAC
CGGCGATGCTTCTGAGGTAGAGAGACCCTTTCCCCCTCACTCATGGTCTC
CCATGTCGCTTGGAAAAGGGCCAGCGCTCAAGTCTACTTGTCTTTCTAGG
TCGTCTCCCCTGCCCCCAGCCGCGCAGATAGTCGAGCTGAGCTCGATGAT
CTTATCTCACGTTTAGTTGACCGCCCGGGGTCGGCTTCCATCAGCCACGG
AGCCGATGGCCTGTCACGGAAAGGAAGTAGGCCTAACTCGGTGCTGAGTG
CTAGCCAGCTCAGTGGCGACAACACGGAAGCGTTCAGTCCAACTACGCGA
CCACTCTCACAGTCAATTGCTGTTCAAACGGTCGGAACGGAGCCGTTTGT
CGCGGCTCCTGAGCCGCAGCCCGCCCCTGAGCCCAAACCCGAAGTTGTCA
CATACAGTAAAGGAGTCCAGACAGAGGAGTTGAAACCGTCCGGCACCACA
GAGTCAGATGATGAAGAAAACAATGGCAGCAAAAGAGATAGCGAACGCGA
CGAAGAGATCCGGAGGAAGCTCCGAAAAGAGATCGAGGAGGAGCTGCAGG
CCACTCAGCAGCACGCTGACAATGAAGCCAGCGCCGAGGCCTCAAATATG
CGTTACCCGCTCCGTACATTAGATGATGACGAATTAAAGGCTGTCACGTC
CTCCGAGGACTTTCTGGATTTCGTTGAACGATCAGCTAAAGTCATTGAGC
GGGCACTGGACGAGGAATACGACGTGCTAGCAGACTACGAGCTTGGAGGC
GTGGATGGTGAACTAGAAGACGACGATGAACATGGACGGAAACGGCGCGG
GATTAGGGAGGTCTGCCAGTTCTGGGACGAGCGATGGAGCAAGAAGCGAA
TGATCAGTGATCTAAGCTTTTCGCCAAAGGTTTGTCGCTCTAAGAGCCAT
CATGAGCTTCGCATTGAGATCTGACACCCCCCACAGTTTCCCGAACTTGT
TCTGGCTGCATACACCAAGAACCCTTCTGCCCCTCATGAGCCCGATGGTC
TCGTCCAGATCTGGAACCAACACCTTCACTCTCGACCGGAGTATGTCTTT
CATTCTACCTCCGACATTTTAGCCGCCAAATTCTCTCCATTCCACCCTAA
TCTCATTGTTGGCGGTTCGTACTCAGGGCAGGTACTGCTTTGGGATACTC
GGTCGTCGCGCGCAGGCGGTGGCGCCCCGGTCCAGAAGACGCCGTTGACT
GGCTCTGGGCATACGCACCCGGTCTACAGTATTTCCATCATTGGAACACA
GAATGCCCATAACATTTTGACCGCATCAACAGATGGCGTGGTCTGCGGTT
GGACGGTCGACATGCTTTCTCAGCCTCAAGAATACCTCGAGCTATCTACC
CCCCCGCCCTCGAAAACAGAAGATCTTGCACCCACGACGATGTCATTTCC
GCAGTCCGACCCCACGTTTTTCATCGTTGGTACTGAGGAAGGAGGAATTT
ACCCATGCCACCGTTACGATAGAGCCGGGGCCAAGGCTGGTACCGACCAT
CGCCTTGTGTATCGCGGTCATAAAGCCCCAATCATGTCTACTGCATTCCA
TCCGGCTCGCGGTCCAGTTGATCTGGGCGATCTCATGCTTAGCTCTAGTC
TGGATTGGAGCGTGAGACTCTGGCGCATCCGTCCGCCGGCAACGACTGCC
CCAGCAACCTCCGCCATAGCCACAACTCAGGTTGTGGAGCCTATTCTTGA
CATTAATCGTGAGGACGTCGTGTACGATGCACGATGGTCCCCTCACCGCC
CCGGTGTCTTCTCTCTCGTCGACGGTGCTGGAAACCTCGAAGTCTGGGAT
CTCTACACAGACACCGAAGTCCCCGTCGTGAAGACGACACCGTCCAAGGG
CCGTGGAGGTATATTAACGAGGAGTCTCAACAAGGTAGCCTGGGAAGAGC
GCGAGGGCAGGCGCATTGCAACGGGTGGGCTTGATGGTGTCGTTACTGTC
TTTGAAGTCGGAAAGGGTCTCAGCGGTACTCCAGAAGACGTTCCTGCCGA
TGAATGGGCGGGCATGAAGAAACTCGTTGGTAAGTTGGAGCAGCAGGACC
GGAACAACTGATGCGCATCCAGCCTGTCTTGGCGAAAAGGGATGAATGAC
TATCTTGTGTTGTTTCCAGCGGACACGGCGACAAGATTGGTCTATTGTTC
CCTTTGTCCTATTCTGTTCTCTCCGAGCCAACAATCCACCGATTGATTCA
TCTGAGGTGCTTTAGTCTTCTTCCCGATCTGTAACACATTTTGAGCGGCG
CCGCTGTTTAGTTTATCATATACCCCGAGGCACCTCGTTGATGTATCTAT
ATTTGTTCCAAGCTAGAAGAACGAAATGGGTTCGAAGAGATCTGATCCAG
CCAACATTTGTACATAATACCTGCTCAACTGCAATGATTCCTTTAGCGGA
TCCAGATG back to topCoding sequence (CDS) from alignment at ch5:1296497..1299104+ >KJC3_007044-T1 ID=KJC3_007044-T1|Name=KJC3_007044-T1|organism=Aspergillus niger KJC3|type=CDS|length=6120bp|location=Sequence derived from alignment at ch5:1296497..1299104+ (Aspergillus niger KJC3)
ATGTCCTCGGCTATGCAACAGCGCAAGGCCGAGATCCTTGCCAAGAGAGC
CAAACTCGCCGAACTGAAGCGGCAGAGAGAGCTGCGGCAGAAGGAATTCT
CGCAAACCCGAGCTAACACCGGCGATGCTTCTGAGGTCGTCTCCCCTGCC
CCCAGCCGCGCAGATAGTCGAGCTGAGCTCGATGATCTTATCTCACGTTT
AGTTGACCGCCCGGGGTCGGCTTCCATCAGCCACGGAGCCGATGGCCTGT
CACGGAAAGGAAGTAGGCCTAACTCGGTGCTGAGTGCTAGCCAGCTCAGT
GGCGACAACACGGAAGCGTTCAGTCCAACTACGCGACCACTCTCACAGTC
AATTGCTGTTCAAACGGTCGGAACGGAGCCGTTTGTCGCGGCTCCTGAGC
CGCAGCCCGCCCCTGAGCCCAAACCCGAAGTTGTCACATACAGTAAAGGA
GTCCAGACAGAGGAGTTGAAACCGTCCGGCACCACAGAGTCAGATGATGA
AGAAAACAATGGCAGCAAAAGAGATAGCGAACGCGACGAAGAGATCCGGA
GGAAGCTCCGAAAAGAGATCGAGGAGGAGCTGCAGGCCACTCAGCAGCAC
GCTGACAATGAAGCCAGCGCCGAGGCCTCAAATATGCGTTACCCGCTCCG
TACATTAGATGATGACGAATTAAAGGCTGTCACGTCCTCCGAGGACTTTC
TGGATTTCGTTGAACGATCAGCTAAAGTCATTGAGCGGGCACTGGACGAG
GAATACGACGTGCTAGCAGACTACGAGCTTGGAGGCGTGGATGGTGAACT
AGAAGACGACGATGAACATGGACGGAAACGGCGCGGGATTAGGGAGGTCT
GCCAGTTCTGGGACGAGCGATGGAGCAAGAAGCGAATGATCAGTGATCTA
AGCTTTTCGCCAAAGTTTCCCGAACTTGTTCTGGCTGCATACACCAAGAA
CCCTTCTGCCCCTCATGAGCCCGATGGTCTCGTCCAGATCTGGAACCAAC
ACCTTCACTCTCGACCGGAGTATGTCTTTCATTCTACCTCCGACATTTTA
GCCGCCAAATTCTCTCCATTCCACCCTAATCTCATTGTTGGCGGTTCGTA
CTCAGGGCAGGTACTGCTTTGGGATACTCGGTCGTCGCGCGCAGGCGGTG
GCGCCCCGGTCCAGAAGACGCCGTTGACTGGCTCTGGGCATACGCACCCG
GTCTACAGTATTTCCATCATTGGAACACAGAATGCCCATAACATTTTGAC
CGCATCAACAGATGGCGTGGTCTGCGGTTGGACGGTCGACATGCTTTCTC
AGCCTCAAGAATACCTCGAGCTATCTACCCCCCCGCCCTCGAAAACAGAA
GATCTTGCACCCACGACGATGTCATTTCCGCAGTCCGACCCCACGTTTTT
CATCGTTGGTACTGAGGAAGGAGGAATTTACCCATGCCACCGTTACGATA
GAGCCGGGGCCAAGGCTGGTACCGACCATCGCCTTGTGTATCGCGGTCAT
AAAGCCCCAATCATGTCTACTGCATTCCATCCGGCTCGCGGTCCAGTTGA
TCTGGGCGATCTCATGCTTAGCTCTAGTCTGGATTGGAGCGTGAGACTCT
GGCGCATCCGTCCGCCGGCAACGACTGCCCCAGCAACCTCCGCCATAGCC
ACAACTCAGGTTGTGGAGCCTATTCTTGACATTAATCGTGAGGACGTCGT
GTACGATGCACGATGGTCCCCTCACCGCCCCGGTGTCTTCTCTCTCGTCG
ACGGTGCTGGAAACCTCGAAGTCTGGGATCTCTACACAGACACCGAAGTC
CCCGTCGTGAAGACGACACCGTCCAAGGGCCGTGGAGGTATATTAACGAG
GAGTCTCAACAAGGTAGCCTGGGAAGAGCGCGAGGGCAGGCGCATTGCAA
CGGGTGGGCTTGATGGTGTCGTTACTGTCTTTGAAGTCGGAAAGGGTCTC
AGCGGTACTCCAGAAGACGTTCCTGCCGATGAATGGGCGGGCATGAAGAA
ACTCGTTGGTAAGTTGGAGCAGCAGGACCGGAACAACTGAATGTCCTCGG
CTATGCAACAGCGCAAGGCCGAGATCCTTGCCAAGAGAGCCAAACTCGCC
GAACTGAAGCGGCAGAGAGAGCTGCGGCAGAAGGAATTCTCGCAAACCCG
AGCTAACACCGGCGATGCTTCTGAGGTCGTCTCCCCTGCCCCCAGCCGCG
CAGATAGTCGAGCTGAGCTCGATGATCTTATCTCACGTTTAGTTGACCGC
CCGGGGTCGGCTTCCATCAGCCACGGAGCCGATGGCCTGTCACGGAAAGG
AAGTAGGCCTAACTCGGTGCTGAGTGCTAGCCAGCTCAGTGGCGACAACA
CGGAAGCGTTCAGTCCAACTACGCGACCACTCTCACAGTCAATTGCTGTT
CAAACGGTCGGAACGGAGCCGTTTGTCGCGGCTCCTGAGCCGCAGCCCGC
CCCTGAGCCCAAACCCGAAGTTGTCACATACAGTAAAGGAGTCCAGACAG
AGGAGTTGAAACCGTCCGGCACCACAGAGTCAGATGATGAAGAAAACAAT
GGCAGCAAAAGAGATAGCGAACGCGACGAAGAGATCCGGAGGAAGCTCCG
AAAAGAGATCGAGGAGGAGCTGCAGGCCACTCAGCAGCACGCTGACAATG
AAGCCAGCGCCGAGGCCTCAAATATGCGTTACCCGCTCCGTACATTAGAT
GATGACGAATTAAAGGCTGTCACGTCCTCCGAGGACTTTCTGGATTTCGT
TGAACGATCAGCTAAAGTCATTGAGCGGGCACTGGACGAGGAATACGACG
TGCTAGCAGACTACGAGCTTGGAGGCGTGGATGGTGAACTAGAAGACGAC
GATGAACATGGACGGAAACGGCGCGGGATTAGGGAGGTCTGCCAGTTCTG
GGACGAGCGATGGAGCAAGAAGCGAATGATCAGTGATCTAAGCTTTTCGC
CAAAGTTTCCCGAACTTGTTCTGGCTGCATACACCAAGAACCCTTCTGCC
CCTCATGAGCCCGATGGTCTCGTCCAGATCTGGAACCAACACCTTCACTC
TCGACCGGAGTATGTCTTTCATTCTACCTCCGACATTTTAGCCGCCAAAT
TCTCTCCATTCCACCCTAATCTCATTGTTGGCGGTTCGTACTCAGGGCAG
GTACTGCTTTGGGATACTCGGTCGTCGCGCGCAGGCGGTGGCGCCCCGGT
CCAGAAGACGCCGTTGACTGGCTCTGGGCATACGCACCCGGTCTACAGTA
TTTCCATCATTGGAACACAGAATGCCCATAACATTTTGACCGCATCAACA
GATGGCGTGGTCTGCGGTTGGACGGTCGACATGCTTTCTCAGCCTCAAGA
ATACCTCGAGCTATCTACCCCCCCGCCCTCGAAAACAGAAGATCTTGCAC
CCACGACGATGTCATTTCCGCAGTCCGACCCCACGTTTTTCATCGTTGGT
ACTGAGGAAGGAGGAATTTACCCATGCCACCGTTACGATAGAGCCGGGGC
CAAGGCTGGTACCGACCATCGCCTTGTGTATCGCGGTCATAAAGCCCCAA
TCATGTCTACTGCATTCCATCCGGCTCGCGGTCCAGTTGATCTGGGCGAT
CTCATGCTTAGCTCTAGTCTGGATTGGAGCGTGAGACTCTGGCGCATCCG
TCCGCCGGCAACGACTGCCCCAGCAACCTCCGCCATAGCCACAACTCAGG
TTGTGGAGCCTATTCTTGACATTAATCGTGAGGACGTCGTGTACGATGCA
CGATGGTCCCCTCACCGCCCCGGTGTCTTCTCTCTCGTCGACGGTGCTGG
AAACCTCGAAGTCTGGGATCTCTACACAGACACCGAAGTCCCCGTCGTGA
AGACGACACCGTCCAAGGGCCGTGGAGGTATATTAACGAGGAGTCTCAAC
AAGGTAGCCTGGGAAGAGCGCGAGGGCAGGCGCATTGCAACGGGTGGGCT
TGATGGTGTCGTTACTGTCTTTGAAGTCGGAAAGGGTCTCAGCGGTACTC
CAGAAGACGTTCCTGCCGATGAATGGGCGGGCATGAAGAAACTCGTTGGT
AAGTTGGAGCAGCAGGACCGGAACAACTGAATGTCCTCGGCTATGCAACA
GCGCAAGGCCGAGATCCTTGCCAAGAGAGCCAAACTCGCCGAACTGAAGC
GGCAGAGAGAGCTGCGGCAGAAGGAATTCTCGCAAACCCGAGCTAACACC
GGCGATGCTTCTGAGGTCGTCTCCCCTGCCCCCAGCCGCGCAGATAGTCG
AGCTGAGCTCGATGATCTTATCTCACGTTTAGTTGACCGCCCGGGGTCGG
CTTCCATCAGCCACGGAGCCGATGGCCTGTCACGGAAAGGAAGTAGGCCT
AACTCGGTGCTGAGTGCTAGCCAGCTCAGTGGCGACAACACGGAAGCGTT
CAGTCCAACTACGCGACCACTCTCACAGTCAATTGCTGTTCAAACGGTCG
GAACGGAGCCGTTTGTCGCGGCTCCTGAGCCGCAGCCCGCCCCTGAGCCC
AAACCCGAAGTTGTCACATACAGTAAAGGAGTCCAGACAGAGGAGTTGAA
ACCGTCCGGCACCACAGAGTCAGATGATGAAGAAAACAATGGCAGCAAAA
GAGATAGCGAACGCGACGAAGAGATCCGGAGGAAGCTCCGAAAAGAGATC
GAGGAGGAGCTGCAGGCCACTCAGCAGCACGCTGACAATGAAGCCAGCGC
CGAGGCCTCAAATATGCGTTACCCGCTCCGTACATTAGATGATGACGAAT
TAAAGGCTGTCACGTCCTCCGAGGACTTTCTGGATTTCGTTGAACGATCA
GCTAAAGTCATTGAGCGGGCACTGGACGAGGAATACGACGTGCTAGCAGA
CTACGAGCTTGGAGGCGTGGATGGTGAACTAGAAGACGACGATGAACATG
GACGGAAACGGCGCGGGATTAGGGAGGTCTGCCAGTTCTGGGACGAGCGA
TGGAGCAAGAAGCGAATGATCAGTGATCTAAGCTTTTCGCCAAAGTTTCC
CGAACTTGTTCTGGCTGCATACACCAAGAACCCTTCTGCCCCTCATGAGC
CCGATGGTCTCGTCCAGATCTGGAACCAACACCTTCACTCTCGACCGGAG
TATGTCTTTCATTCTACCTCCGACATTTTAGCCGCCAAATTCTCTCCATT
CCACCCTAATCTCATTGTTGGCGGTTCGTACTCAGGGCAGGTACTGCTTT
GGGATACTCGGTCGTCGCGCGCAGGCGGTGGCGCCCCGGTCCAGAAGACG
CCGTTGACTGGCTCTGGGCATACGCACCCGGTCTACAGTATTTCCATCAT
TGGAACACAGAATGCCCATAACATTTTGACCGCATCAACAGATGGCGTGG
TCTGCGGTTGGACGGTCGACATGCTTTCTCAGCCTCAAGAATACCTCGAG
CTATCTACCCCCCCGCCCTCGAAAACAGAAGATCTTGCACCCACGACGAT
GTCATTTCCGCAGTCCGACCCCACGTTTTTCATCGTTGGTACTGAGGAAG
GAGGAATTTACCCATGCCACCGTTACGATAGAGCCGGGGCCAAGGCTGGT
ACCGACCATCGCCTTGTGTATCGCGGTCATAAAGCCCCAATCATGTCTAC
TGCATTCCATCCGGCTCGCGGTCCAGTTGATCTGGGCGATCTCATGCTTA
GCTCTAGTCTGGATTGGAGCGTGAGACTCTGGCGCATCCGTCCGCCGGCA
ACGACTGCCCCAGCAACCTCCGCCATAGCCACAACTCAGGTTGTGGAGCC
TATTCTTGACATTAATCGTGAGGACGTCGTGTACGATGCACGATGGTCCC
CTCACCGCCCCGGTGTCTTCTCTCTCGTCGACGGTGCTGGAAACCTCGAA
GTCTGGGATCTCTACACAGACACCGAAGTCCCCGTCGTGAAGACGACACC
GTCCAAGGGCCGTGGAGGTATATTAACGAGGAGTCTCAACAAGGTAGCCT
GGGAAGAGCGCGAGGGCAGGCGCATTGCAACGGGTGGGCTTGATGGTGTC
GTTACTGTCTTTGAAGTCGGAAAGGGTCTCAGCGGTACTCCAGAAGACGT
TCCTGCCGATGAATGGGCGGGCATGAAGAAACTCGTTGGTAAGTTGGAGC
AGCAGGACCGGAACAACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007044-T1.utr5p1 | KJC3_007044-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007044-T1.utr3p1 | KJC3_007044-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:1296497..1299104 + |
|
