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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:1410944..1411595+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007083-T1 ID=KJC3_007083-T1|Name=KJC3_007083-T1|organism=Aspergillus niger KJC3|type=mRNA|length=652bp|location=Sequence derived from alignment at ch5:1410944..1411595+ (Aspergillus niger KJC3)
ATGCGCAAGAAGACCTGGTAGGTTGTCTCTTGACTGCATGGATGTATGCT
GACCAAGAGAACGCAGTCTGACATGCAAATCGCGCAAGGTGCGATGTAAG
GACCCTATGAACTCGGACCTTATGCTGGCTCTATAGAGCTGATCCCTCAC
AGGCGATGGTGTCCAACCAGTTTGTGGTCGTTGCTCGAAGTCTAATCGCT
CCTGTCGCTACGCTCAACGTCGCTCTGGGGCCATCGCCTTCCGACATAGC
AGATTGTCGACCCTGGTAGCTCAAGCAGAAGTGTTCACCCAAAACGATAA
GAATAACGCCCCAGACTCAACACAGCCCCCCGCATCTCCTCCTGTAGTGG
CAGATACCAGTCAAGTGCCATCAACGTCTCCATTCCTTGCTGACCCGGTG
GTCTCTGCTACCCTCCCCGTAAACGATAGAACCCTACCGCATAATGTCAT
ACGCTATCCTACCTCCGAGTCCCAAGGAGCAGCATCGATTTCATTCCTCC
CACAAACTCCGGGCACATCTTCGCCGACTGCGCCAATCACCAGGTGCCCT
CTATTCTACAGACATGCGCCTCGTGCACTGACGACCGCCGAGGGCGAACT
ATTGCACTTCTTCGTGCAAAACATCGGACCCTGGGTACACACACCCATCT
GA back to topCoding sequence (CDS) from alignment at ch5:1410944..1411595+ >KJC3_007083-T1 ID=KJC3_007083-T1|Name=KJC3_007083-T1|organism=Aspergillus niger KJC3|type=CDS|length=1638bp|location=Sequence derived from alignment at ch5:1410944..1411595+ (Aspergillus niger KJC3)
ATGCGCAAGAAGACCTGTCTGACATGCAAATCGCGCAAGGTGCGATGCGA
TGGTGTCCAACCAGTTTGTGGTCGTTGCTCGAAGTCTAATCGCTCCTGTC
GCTACGCTCAACGTCGCTCTGGGGCCATCGCCTTCCGACATAGCAGATTG
TCGACCCTGGTAGCTCAAGCAGAAGTGTTCACCCAAAACGATAAGAATAA
CGCCCCAGACTCAACACAGCCCCCCGCATCTCCTCCTGTAGTGGCAGATA
CCAGTCAAGTGCCATCAACGTCTCCATTCCTTGCTGACCCGGTGGTCTCT
GCTACCCTCCCCGTAAACGATAGAACCCTACCGCATAATGTCATACGCTA
TCCTACCTCCGAGTCCCAAGGAGCAGCATCGATTTCATTCCTCCCACAAA
CTCCGGGCACATCTTCGCCGACTGCGCCAATCACCAGGTGCCCTCTATTC
TACAGACATGCGCCTCGTGCACTGACGACCGCCGAGGGCGAACTATTGCA
CTTCTTCGTGCAAAACATCGGACCCTGGGTACACACACCCATCTGAATGC
GCAAGAAGACCTGTCTGACATGCAAATCGCGCAAGGTGCGATGCGATGGT
GTCCAACCAGTTTGTGGTCGTTGCTCGAAGTCTAATCGCTCCTGTCGCTA
CGCTCAACGTCGCTCTGGGGCCATCGCCTTCCGACATAGCAGATTGTCGA
CCCTGGTAGCTCAAGCAGAAGTGTTCACCCAAAACGATAAGAATAACGCC
CCAGACTCAACACAGCCCCCCGCATCTCCTCCTGTAGTGGCAGATACCAG
TCAAGTGCCATCAACGTCTCCATTCCTTGCTGACCCGGTGGTCTCTGCTA
CCCTCCCCGTAAACGATAGAACCCTACCGCATAATGTCATACGCTATCCT
ACCTCCGAGTCCCAAGGAGCAGCATCGATTTCATTCCTCCCACAAACTCC
GGGCACATCTTCGCCGACTGCGCCAATCACCAGGTGCCCTCTATTCTACA
GACATGCGCCTCGTGCACTGACGACCGCCGAGGGCGAACTATTGCACTTC
TTCGTGCAAAACATCGGACCCTGGGTACACACACCCATCTGAATGCGCAA
GAAGACCTGTCTGACATGCAAATCGCGCAAGGTGCGATGCGATGGTGTCC
AACCAGTTTGTGGTCGTTGCTCGAAGTCTAATCGCTCCTGTCGCTACGCT
CAACGTCGCTCTGGGGCCATCGCCTTCCGACATAGCAGATTGTCGACCCT
GGTAGCTCAAGCAGAAGTGTTCACCCAAAACGATAAGAATAACGCCCCAG
ACTCAACACAGCCCCCCGCATCTCCTCCTGTAGTGGCAGATACCAGTCAA
GTGCCATCAACGTCTCCATTCCTTGCTGACCCGGTGGTCTCTGCTACCCT
CCCCGTAAACGATAGAACCCTACCGCATAATGTCATACGCTATCCTACCT
CCGAGTCCCAAGGAGCAGCATCGATTTCATTCCTCCCACAAACTCCGGGC
ACATCTTCGCCGACTGCGCCAATCACCAGGTGCCCTCTATTCTACAGACA
TGCGCCTCGTGCACTGACGACCGCCGAGGGCGAACTATTGCACTTCTTCG
TGCAAAACATCGGACCCTGGGTACACACACCCATCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:1410944..1411595 + |
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