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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:1817397..1818813+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007209-T1 ID=KJC3_007209-T1|Name=KJC3_007209-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1417bp|location=Sequence derived from alignment at ch5:1817397..1818813+ (Aspergillus niger KJC3)
ACCGGCCACCCCTAGCACACCGCCTTAGAATCACTGTACTACTCATTGCT
CATTCACTGCCTTTGATAGAAACAGTGGTTGCAAGTAGAAACGCGTTGGG
TGGTGTACTGGGTGGCCGGCGCGGGCGGGAGTTACGTTACCGCTATTCTG
CAGGGCTATATATTTCAGCCTAGCTCTGCTACAAGGAAACTGGCATTCAC
TCTCTTTCCATTGTCCCTTCAACGACCGAATATTGAGCGGCTAGACGACC
ATGGCTATCGACCTTGAAAATGACATTGTCCTTCTCACTTGCGCAAGTGG
TAAGCAATGTTCCCATCTGATCCCGCTCCTCTACCGTAGGTGGAGGAAGC
TCCGCCTCGCTGTTCACAGCGTTCATTCCGAGAGGGATCTGAAGTCGCGC
TATCCGGAGGCCGAGGTGGTGCAGGGCGATATAGCCAAGCCAGAATACAG
AGACCAGATTTTGGCCGGTGCTACAGTCGTCGTATATATTGCCCCAGCAT
TTCATCCGCAGGAAGCAGAAATTGGCTATGCCATGATTGAAGCTGCGCGC
CATGAGGCCCGGAACGGGACTTTTAAGCACTTCATCTACTCCTCTGTGCT
GCACCCGCAGCTTCGGAAGCTGATGAACCATGACTGCAAGCGCTACGTTG
AGGAATACCTCATTGAATCAGGACTCAACTACACGATTCTTCAGCCCAGC
CATTTTCTCGACATGTTCCCGGTCGAAACGTTGCTGCATCAAGCGGAACC
TGTCTTCCGCGCAAATTTTAATCCAGACACGGCCTTCTCGTTCACCATTT
TGCAGGACCTAGCAGAGGCTTTTGCCAAGGTGATTGAGGAAAGAGACAGA
CATTATCTCGCCGAGTACATGATCTGTTCAACCAGGCCCACCTCATATCG
AGATATCGTCGCCACGCTCGGTCATGTAACAGGTACACGCATCGGTATTG
TGACGCAGGAGTTCTACGAGACTGCTGAGCGGCTGCAGTCCTTGGTGTCT
AAGGATGCTGGTGGTTGCCATCATACCACACGGGACGGTATCCATCGACT
GCAGCTTTACTATGACATTTATGGTATCAAAGGCAATCCTAATGTGCTGG
AATGGTTGATTGGTCGAAAGCCGATGACGGTGGAGGAGCATTTCCGGAAG
CGGGTCTCCATCAAAGAGGCTGATTAGATGAGGGACGCTATGTACAGCAA
GCCTATCAATCGGAGATGACCATCCAGAAGCCCAAGGGGAGCGAGGCTCC
ATACAATTGGTGTGTGTGAGGGCTCTTGCCTGGCGAGGCAATATGTCAGT
TGGAGTAACCCTGCACCGACATTAGACTATCAAATGAGCTTTGAATCAAC
TTTACGGCAGTGGAACTGTTGCCGAGCCTTTGATAAGCACTCTCTCAAGA
ATATGCCAGGAAAGGCG back to topCoding sequence (CDS) from alignment at ch5:1817397..1818813+ >KJC3_007209-T1 ID=KJC3_007209-T1|Name=KJC3_007209-T1|organism=Aspergillus niger KJC3|type=CDS|length=927bp|location=Sequence derived from alignment at ch5:1817397..1818813+ (Aspergillus niger KJC3)
ATGGCTATCGACCTTGAAAATGACATTGTCCTTCTCACTTGCGCAAGTGG
TAAGCAATGTTCCCATCTGATCCCGCTCCTCTACCGTAGGTGGAGGAAGC
TCCGCCTCGCTGTTCACAGCGTTCATTCCGAGAGGGATCTGAAGTCGCGC
TATCCGGAGGCCGAGGTGGTGCAGGGCGATATAGCCAAGCCAGAATACAG
AGACCAGATTTTGGCCGGTGCTACAGTCGTCGTATATATTGCCCCAGCAT
TTCATCCGCAGGAAGCAGAAATTGGCTATGCCATGATTGAAGCTGCGCGC
CATGAGGCCCGGAACGGGACTTTTAAGCACTTCATCTACTCCTCTGTGCT
GCACCCGCAGCTTCGGAAGCTGATGAACCATGACTGCAAGCGCTACGTTG
AGGAATACCTCATTGAATCAGGACTCAACTACACGATTCTTCAGCCCAGC
CATTTTCTCGACATGTTCCCGGTCGAAACGTTGCTGCATCAAGCGGAACC
TGTCTTCCGCGCAAATTTTAATCCAGACACGGCCTTCTCGTTCACCATTT
TGCAGGACCTAGCAGAGGCTTTTGCCAAGGTGATTGAGGAAAGAGACAGA
CATTATCTCGCCGAGTACATGATCTGTTCAACCAGGCCCACCTCATATCG
AGATATCGTCGCCACGCTCGGTCATGTAACAGGTACACGCATCGGTATTG
TGACGCAGGAGTTCTACGAGACTGCTGAGCGGCTGCAGTCCTTGGTGTCT
AAGGATGCTGGTGGTTGCCATCATACCACACGGGACGGTATCCATCGACT
GCAGCTTTACTATGACATTTATGGTATCAAAGGCAATCCTAATGTGCTGG
AATGGTTGATTGGTCGAAAGCCGATGACGGTGGAGGAGCATTTCCGGAAG
CGGGTCTCCATCAAAGAGGCTGATTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007209-T1.utr5p1 | KJC3_007209-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007209-T1.utr3p1 | KJC3_007209-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:1817397..1818813 + |
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