You are here

Home

KJC3_007277-T1, KJC3_007277-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007277-T1
Unique NameKJC3_007277-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2007291..2008586-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007277-T1 ID=KJC3_007277-T1|Name=KJC3_007277-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1296bp|location=Sequence derived from alignment at ch5:2007291..2008586- (Aspergillus niger KJC3)
TTTTTGCTTACTTTCTACGTGACTCACATGCGCATTGGTTTTGTAGTACT
TTCTATACAGACAAAATGATTGAACCGTTTCAGGTGGGCTCTTGCCAGGG
TTGACGATGCATCGTCGTGAGGGGAATGCCTAACTAATCGCTTAGACTAC
CTTTGCGGTCCCGATGACCTGCGAGGGCTGCGTCAAGGATGTTTCTGCAT
CGCTGAAGAAGTTGGAGGGTAGGCGCATCCACATTGCAACCCTGTGCTCG
AGCTGACCGGTCAGGCATCAACATGGTCGAGGCAAACCTTAAGGACCAGC
TAGTCTTCATCGAGGGCACGGCACCACCCAGCTCGATTGTCTCCGCTATC
CAAGCTACGGGACGGGATGCCATTCTACGAGGCAGTGGCACCTCCAACAG
TATGTCTATCACCTGCCTATCCCAGGCAGTACACCGAGGCTGATGGCACC
TTTTGCAGGTTCCGCGGTGTGTATCTTGGAAACCCACTCGAATAGCGTCT
CCAACAAGATTCGCGGTCTGGCGCGCATGGTCCAGGTGTCCTCCAACATG
ACCCTGGTCGACCTGACGATCAACGGCCTTACTCCCGGCAAGTATTATGC
CACGGTACGCGACACAGGAGATATCTCGCAGGGTGCTGGATCCACCGGAG
GCATTTGGGAGGCCGTCAAGGCTAAAGTGCTGGGGTCGGAGCCAGTCAAG
GAACCCCGCGGCATTTTTGGGTCGGTCGAAGTGAACGACAAGGGCCGGGG
CAATGTATTTTTGGATCGCCCGGTAGCGGTGTGGGAGATGATTGGGCGCA
GTATGGTAGTGTCGAAGAGCCAGGAGGGGCCCTTTCGACAGGAAGACCCT
GACACTCTAGTGGGAGTGATCGCTCGAAGCGCGGGGGTGTGGGATAATGA
CAAGATGGTGTGTTCCTGCTCTGGAAAGAATGTGTGGCAGGAGCGGCAGG
AGCAGGTGGCCCAGGGCATGGCCTAGAGGGGAAACAGAGAGGGAAATGAG
GACGTGGTTGGAGGAAGCTAGACTGGCGGGTGTGTCTATGTATAGCAAGC
AGTCCGGTCAGTGGTTAGAAGTGTGCATAGTACTAGGGATAGGATACCCA
CGATCGATGATCGATCAGCCCTGAGATAAGGAATACGAGCAAGCATGAAG
AGTGACGATATTCTAGCGTGCTGCCGAACTTTTAAATAGAAACGCGTGGG
CGAGGGGTTTCCAGAAATAGCCACCAGGCCAGGGAACCTAGTTGCATCAC
CGGTAGTTGGTATTAAGTGGTGGTTGGTGATGGGGAGATGGCGATG
back to top

Coding sequence (CDS) from alignment at ch5:2007291..2008586-

>KJC3_007277-T1 ID=KJC3_007277-T1|Name=KJC3_007277-T1|organism=Aspergillus niger KJC3|type=CDS|length=2976bp|location=Sequence derived from alignment at ch5:2007291..2008586- (Aspergillus niger KJC3)
GTTCCGCGGTGTGTATCTTGGAAACCCACTCGAATAGCGTCTCCAACAAG
ATTCGCGGTCTGGCGCGCATGGTCCAGGTGTCCTCCAACATGACCCTGGT
CGACCTGACGATCAACGGCCTTACTCCCGGCAAGTATTATGCCACGGTAC
GCGACACAGGAGATATCTCGCAGGGTGCTGGATCCACCGGAGGCATTTGG
GAGGCCGTCAAGGCTAAAGTGCTGGGGTCGGAGCCAGTCAAGGAACCCCG
CGGCATTTTTGGGTCGGTCGAAGTGAACGACAAGGGCCGGGGCAATGTAT
TTTTGGATCGCCCGGTAGCGGTGTGGGAGATGATTGGGCGCAGTATGGTA
GTGTCGAAGAGCCAGGAGGGGCCCTTTCGACAGGAAGACCCTGACACTCT
AGTGGGAGTGATCGCTCGAAGCGCGGGGGTGTGGGATAATGACAAGATGG
TGTGTTCCTGCTCTGGAAAGAATGTGTGGCAGGAGCGGCAGGAGCAGGTG
GCCCAGGGCATGGCCTAGGCATCAACATGGTCGAGGCAAACCTTAAGGAC
CAGCTAGTCTTCATCGAGGGCACGGCACCACCCAGCTCGATTGTCTCCGC
TATCCAAGCTACGGGACGGGATGCCATTCTACGAGGCAGTGGCACCTCCA
ACAACTACCTTTGCGGTCCCGATGACCTGCGAGGGCTGCGTCAAGGATGT
TTCTGCATCGCTGAAGAAGTTGGAGGATGATTGAACCGTTTCAGGTTCCG
CGGTGTGTATCTTGGAAACCCACTCGAATAGCGTCTCCAACAAGATTCGC
GGTCTGGCGCGCATGGTCCAGGTGTCCTCCAACATGACCCTGGTCGACCT
GACGATCAACGGCCTTACTCCCGGCAAGTATTATGCCACGGTACGCGACA
CAGGAGATATCTCGCAGGGTGCTGGATCCACCGGAGGCATTTGGGAGGCC
GTCAAGGCTAAAGTGCTGGGGTCGGAGCCAGTCAAGGAACCCCGCGGCAT
TTTTGGGTCGGTCGAAGTGAACGACAAGGGCCGGGGCAATGTATTTTTGG
ATCGCCCGGTAGCGGTGTGGGAGATGATTGGGCGCAGTATGGTAGTGTCG
AAGAGCCAGGAGGGGCCCTTTCGACAGGAAGACCCTGACACTCTAGTGGG
AGTGATCGCTCGAAGCGCGGGGGTGTGGGATAATGACAAGATGGTGTGTT
CCTGCTCTGGAAAGAATGTGTGGCAGGAGCGGCAGGAGCAGGTGGCCCAG
GGCATGGCCTAGGCATCAACATGGTCGAGGCAAACCTTAAGGACCAGCTA
GTCTTCATCGAGGGCACGGCACCACCCAGCTCGATTGTCTCCGCTATCCA
AGCTACGGGACGGGATGCCATTCTACGAGGCAGTGGCACCTCCAACAACT
ACCTTTGCGGTCCCGATGACCTGCGAGGGCTGCGTCAAGGATGTTTCTGC
ATCGCTGAAGAAGTTGGAGGATGATTGAACCGTTTCAGGTTCCGCGGTGT
GTATCTTGGAAACCCACTCGAATAGCGTCTCCAACAAGATTCGCGGTCTG
GCGCGCATGGTCCAGGTGTCCTCCAACATGACCCTGGTCGACCTGACGAT
CAACGGCCTTACTCCCGGCAAGTATTATGCCACGGTACGCGACACAGGAG
ATATCTCGCAGGGTGCTGGATCCACCGGAGGCATTTGGGAGGCCGTCAAG
GCTAAAGTGCTGGGGTCGGAGCCAGTCAAGGAACCCCGCGGCATTTTTGG
GTCGGTCGAAGTGAACGACAAGGGCCGGGGCAATGTATTTTTGGATCGCC
CGGTAGCGGTGTGGGAGATGATTGGGCGCAGTATGGTAGTGTCGAAGAGC
CAGGAGGGGCCCTTTCGACAGGAAGACCCTGACACTCTAGTGGGAGTGAT
CGCTCGAAGCGCGGGGGTGTGGGATAATGACAAGATGGTGTGTTCCTGCT
CTGGAAAGAATGTGTGGCAGGAGCGGCAGGAGCAGGTGGCCCAGGGCATG
GCCTAGGCATCAACATGGTCGAGGCAAACCTTAAGGACCAGCTAGTCTTC
ATCGAGGGCACGGCACCACCCAGCTCGATTGTCTCCGCTATCCAAGCTAC
GGGACGGGATGCCATTCTACGAGGCAGTGGCACCTCCAACAACTACCTTT
GCGGTCCCGATGACCTGCGAGGGCTGCGTCAAGGATGTTTCTGCATCGCT
GAAGAAGTTGGAGGATGATTGAACCGTTTCAGGTTCCGCGGTGTGTATCT
TGGAAACCCACTCGAATAGCGTCTCCAACAAGATTCGCGGTCTGGCGCGC
ATGGTCCAGGTGTCCTCCAACATGACCCTGGTCGACCTGACGATCAACGG
CCTTACTCCCGGCAAGTATTATGCCACGGTACGCGACACAGGAGATATCT
CGCAGGGTGCTGGATCCACCGGAGGCATTTGGGAGGCCGTCAAGGCTAAA
GTGCTGGGGTCGGAGCCAGTCAAGGAACCCCGCGGCATTTTTGGGTCGGT
CGAAGTGAACGACAAGGGCCGGGGCAATGTATTTTTGGATCGCCCGGTAG
CGGTGTGGGAGATGATTGGGCGCAGTATGGTAGTGTCGAAGAGCCAGGAG
GGGCCCTTTCGACAGGAAGACCCTGACACTCTAGTGGGAGTGATCGCTCG
AAGCGCGGGGGTGTGGGATAATGACAAGATGGTGTGTTCCTGCTCTGGAA
AGAATGTGTGGCAGGAGCGGCAGGAGCAGGTGGCCCAGGGCATGGCCTAG
GCATCAACATGGTCGAGGCAAACCTTAAGGACCAGCTAGTCTTCATCGAG
GGCACGGCACCACCCAGCTCGATTGTCTCCGCTATCCAAGCTACGGGACG
GGATGCCATTCTACGAGGCAGTGGCACCTCCAACAACTACCTTTGCGGTC
CCGATGACCTGCGAGGGCTGCGTCAAGGATGTTTCTGCATCGCTGAAGAA
GTTGGAGGATGATTGAACCGTTTCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0030001metal ion transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_007277KJC3_007277Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007277-T1KJC3_007277-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007277-T1.cdsKJC3_007277-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007277-T1.utr3p1KJC3_007277-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007277-T1.exon4KJC3_007277-T1.exon4Aspergillus niger KJC3exon
KJC3_007277-T1.exon3KJC3_007277-T1.exon3Aspergillus niger KJC3exon
KJC3_007277-T1.exon2KJC3_007277-T1.exon2Aspergillus niger KJC3exon
KJC3_007277-T1.exon1KJC3_007277-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007277-T1.utr5p1KJC3_007277-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036163
DBxrefInterPro:IPR036423
DBxrefInterPro:IPR001424
DBxrefInterPro:IPR006121
DBxrefPFAM:PF00080
DBxrefPFAM:PF00403
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2007291..2008586 -
Powered by Drupal