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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2118641..2120258+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007313-T1 ID=KJC3_007313-T1|Name=KJC3_007313-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1618bp|location=Sequence derived from alignment at ch5:2118641..2120258+ (Aspergillus niger KJC3)
TTCAGCTGTTCAGCAGATATTCTGTACCATCACATGGAAACATACAAAGT
CCAATGAACACAAAGACCACACCCCAGCCCGCCCCAGGTGGTCTAGGACG
GGGCCTCTTCGCCTCAACAGACATTGCCGTCGGCGAAGAAGTGCTACACA
TTCCCGTCCCATTCGTGGCAGTCCTAGACACGGAACACCTAGGAGAGGTA
TGCTCCGGCTGCTTTGGCCAGAGACAGCTAGAAGAGGAAGGGATAACTCT
GAAAGGCTGCAGAGGATGCGGCATTGTGAAGTACTGCGATAAGGTCAAAA
AATAGCCTCCCCACTTGCAGAAAACCTCACTAACCCTCGCAGACATGTCA
AGCAAAGGACTGGAAGCTGGGACACTCTCTTGAATGCTCGATCTACCAGA
ACCTGAAGCCCCGCGTTCTGCCTATCAACGCGCGAGCCGTGCTGCGCATG
GTCTTGCGCAGCGAACGCCAAAAGTACTCCAGCGAGGAGCTGGACCAGTT
CCTCCAGCTTGGGACTCATATCAAGGACATTCGCGACCAAAGTGCCTCGC
AGTGGGAGCGTATATCTCTTTCCTCGAAGGCGATCAGGGCCTACTCTGGC
ACGGATATGAGCGAAGAGGTCATATCTGCTATGGGAGCCAAGGTATGTAC
ATACATACATACACAATGCTATACATACATACCCTTCAAAAGAAAACTCA
CACCCTTTCTAGCTCGACCTCAACTCCTTCAACCTCACCAACGCCGTCTA
TGACCGCCTCGGCGTCTACCTCCACCCTTACGCCGCTATCTTCAACCACA
GCTGCGACCACAACGCCGCCGTCAGCTTCGACGGCCCCAACCTGCACATC
AAAGCCCTCCGACCCATCCGGAAGGACGAGCAGATCTTCATCACTTACAT
AGACGTAACGGACCCCTATCCTATTCGCCAAGCTAACCTCCAATCTCGAT
ACTACTTTACCTGCCACTGCTCGAAATGCACCCGAGAAGCAGGCTCACCA
GCAGCAATAACCCTACACCCAGCACAGCAAGAAGCCTACAAAATCCTCCA
ATCCCTATCAACCTTAGAGAATCCCATCCAAACCCTCCTTCAAGCCCTCA
CCACCCTCCAAACCTTCTCCCTCCCCAAAACAACCCAACCCTCCATCTCC
CTCCACGACGAACTCATCACCGCCCTCCTCGCCAAACAGAAATACAAGTC
TGCCTTCGCCCACGCCGCGGCCCGCTACCGTGCTGTCGATCCGATCGTGT
ACCCGCTCCAGGGACATCCGATCCGGTTGCTGCATGCGTGGGTGTTGGCT
AGGTTGGCGATTCATTTGTCACAGGGCGTTGAGGTACAGCATACTGGTGG
TAATGAGGAAATTGTCTTGGAGAAGTACGAGTTGAATTTTAATTTAATTA
TTTGGTCGGTGTTGGCGAAGTTGGTAGGGATGGAAAGCATGGGGGGCATG
GGCCCTGGGTTTTGGAGGTTAGTGAAGAGGGAGTTTCGGGCTGTGAGGGG
GGAGTTTGTTGCTGCGGGGTTGGATCCGAGGGGGTCGAGGGAGTTGGAGA
GGGAGATTGGGAGGGAGTGGGGGAAGGTGGATGGGGTGGTTAGGGATTTG
GGGTTTAGTATAGCTTAG back to topCoding sequence (CDS) from alignment at ch5:2118641..2120258+ >KJC3_007313-T1 ID=KJC3_007313-T1|Name=KJC3_007313-T1|organism=Aspergillus niger KJC3|type=CDS|length=4338bp|location=Sequence derived from alignment at ch5:2118641..2120258+ (Aspergillus niger KJC3)
ATGAACACAAAGACCACACCCCAGCCCGCCCCAGGTGGTCTAGGACGGGG
CCTCTTCGCCTCAACAGACATTGCCGTCGGCGAAGAAGTGCTACACATTC
CCGTCCCATTCGTGGCAGTCCTAGACACGGAACACCTAGGAGAGGTATGC
TCCGGCTGCTTTGGCCAGAGACAGCTAGAAGAGGAAGGGATAACTCTGAA
AGGCTGCAGAGGATGCGGCATTGTGAAGTACTGCGATAAGACATGTCAAG
CAAAGGACTGGAAGCTGGGACACTCTCTTGAATGCTCGATCTACCAGAAC
CTGAAGCCCCGCGTTCTGCCTATCAACGCGCGAGCCGTGCTGCGCATGGT
CTTGCGCAGCGAACGCCAAAAGTACTCCAGCGAGGAGCTGGACCAGTTCC
TCCAGCTTGGGACTCATATCAAGGACATTCGCGACCAAAGTGCCTCGCAG
TGGGAGCGTATATCTCTTTCCTCGAAGGCGATCAGGGCCTACTCTGGCAC
GGATATGAGCGAAGAGGTCATATCTGCTATGGGAGCCAAGCTCGACCTCA
ACTCCTTCAACCTCACCAACGCCGTCTATGACCGCCTCGGCGTCTACCTC
CACCCTTACGCCGCTATCTTCAACCACAGCTGCGACCACAACGCCGCCGT
CAGCTTCGACGGCCCCAACCTGCACATCAAAGCCCTCCGACCCATCCGGA
AGGACGAGCAGATCTTCATCACTTACATAGACGTAACGGACCCCTATCCT
ATTCGCCAAGCTAACCTCCAATCTCGATACTACTTTACCTGCCACTGCTC
GAAATGCACCCGAGAAGCAGGCTCACCAGCAGCAATAACCCTACACCCAG
CACAGCAAGAAGCCTACAAAATCCTCCAATCCCTATCAACCTTAGAGAAT
CCCATCCAAACCCTCCTTCAAGCCCTCACCACCCTCCAAACCTTCTCCCT
CCCCAAAACAACCCAACCCTCCATCTCCCTCCACGACGAACTCATCACCG
CCCTCCTCGCCAAACAGAAATACAAGTCTGCCTTCGCCCACGCCGCGGCC
CGCTACCGTGCTGTCGATCCGATCGTGTACCCGCTCCAGGGACATCCGAT
CCGGTTGCTGCATGCGTGGGTGTTGGCTAGGTTGGCGATTCATTTGTCAC
AGGGCGTTGAGGTACAGCATACTGGTGGTAATGAGGAAATTGTCTTGGAG
AAGTACGAGTTGAATTTTAATTTAATTATTTGGTCGGTGTTGGCGAAGTT
GGTAGGGATGGAAAGCATGGGGGGCATGGGCCCTGGGTTTTGGAGGTTAG
TGAAGAGGGAGTTTCGGGCTGTGAGGGGGGAGTTTGTTGCTGCGGGGTTG
GATCCGAGGGGGTCGAGGGAGTTGGAGAGGGAGATTGGGAGGGAGTGGGG
GAAGGTGGATGGGGTGGTTAGGGATTTGGGGTTTAGTATAGCTTAGATGA
ACACAAAGACCACACCCCAGCCCGCCCCAGGTGGTCTAGGACGGGGCCTC
TTCGCCTCAACAGACATTGCCGTCGGCGAAGAAGTGCTACACATTCCCGT
CCCATTCGTGGCAGTCCTAGACACGGAACACCTAGGAGAGGTATGCTCCG
GCTGCTTTGGCCAGAGACAGCTAGAAGAGGAAGGGATAACTCTGAAAGGC
TGCAGAGGATGCGGCATTGTGAAGTACTGCGATAAGACATGTCAAGCAAA
GGACTGGAAGCTGGGACACTCTCTTGAATGCTCGATCTACCAGAACCTGA
AGCCCCGCGTTCTGCCTATCAACGCGCGAGCCGTGCTGCGCATGGTCTTG
CGCAGCGAACGCCAAAAGTACTCCAGCGAGGAGCTGGACCAGTTCCTCCA
GCTTGGGACTCATATCAAGGACATTCGCGACCAAAGTGCCTCGCAGTGGG
AGCGTATATCTCTTTCCTCGAAGGCGATCAGGGCCTACTCTGGCACGGAT
ATGAGCGAAGAGGTCATATCTGCTATGGGAGCCAAGCTCGACCTCAACTC
CTTCAACCTCACCAACGCCGTCTATGACCGCCTCGGCGTCTACCTCCACC
CTTACGCCGCTATCTTCAACCACAGCTGCGACCACAACGCCGCCGTCAGC
TTCGACGGCCCCAACCTGCACATCAAAGCCCTCCGACCCATCCGGAAGGA
CGAGCAGATCTTCATCACTTACATAGACGTAACGGACCCCTATCCTATTC
GCCAAGCTAACCTCCAATCTCGATACTACTTTACCTGCCACTGCTCGAAA
TGCACCCGAGAAGCAGGCTCACCAGCAGCAATAACCCTACACCCAGCACA
GCAAGAAGCCTACAAAATCCTCCAATCCCTATCAACCTTAGAGAATCCCA
TCCAAACCCTCCTTCAAGCCCTCACCACCCTCCAAACCTTCTCCCTCCCC
AAAACAACCCAACCCTCCATCTCCCTCCACGACGAACTCATCACCGCCCT
CCTCGCCAAACAGAAATACAAGTCTGCCTTCGCCCACGCCGCGGCCCGCT
ACCGTGCTGTCGATCCGATCGTGTACCCGCTCCAGGGACATCCGATCCGG
TTGCTGCATGCGTGGGTGTTGGCTAGGTTGGCGATTCATTTGTCACAGGG
CGTTGAGGTACAGCATACTGGTGGTAATGAGGAAATTGTCTTGGAGAAGT
ACGAGTTGAATTTTAATTTAATTATTTGGTCGGTGTTGGCGAAGTTGGTA
GGGATGGAAAGCATGGGGGGCATGGGCCCTGGGTTTTGGAGGTTAGTGAA
GAGGGAGTTTCGGGCTGTGAGGGGGGAGTTTGTTGCTGCGGGGTTGGATC
CGAGGGGGTCGAGGGAGTTGGAGAGGGAGATTGGGAGGGAGTGGGGGAAG
GTGGATGGGGTGGTTAGGGATTTGGGGTTTAGTATAGCTTAGATGAACAC
AAAGACCACACCCCAGCCCGCCCCAGGTGGTCTAGGACGGGGCCTCTTCG
CCTCAACAGACATTGCCGTCGGCGAAGAAGTGCTACACATTCCCGTCCCA
TTCGTGGCAGTCCTAGACACGGAACACCTAGGAGAGGTATGCTCCGGCTG
CTTTGGCCAGAGACAGCTAGAAGAGGAAGGGATAACTCTGAAAGGCTGCA
GAGGATGCGGCATTGTGAAGTACTGCGATAAGACATGTCAAGCAAAGGAC
TGGAAGCTGGGACACTCTCTTGAATGCTCGATCTACCAGAACCTGAAGCC
CCGCGTTCTGCCTATCAACGCGCGAGCCGTGCTGCGCATGGTCTTGCGCA
GCGAACGCCAAAAGTACTCCAGCGAGGAGCTGGACCAGTTCCTCCAGCTT
GGGACTCATATCAAGGACATTCGCGACCAAAGTGCCTCGCAGTGGGAGCG
TATATCTCTTTCCTCGAAGGCGATCAGGGCCTACTCTGGCACGGATATGA
GCGAAGAGGTCATATCTGCTATGGGAGCCAAGCTCGACCTCAACTCCTTC
AACCTCACCAACGCCGTCTATGACCGCCTCGGCGTCTACCTCCACCCTTA
CGCCGCTATCTTCAACCACAGCTGCGACCACAACGCCGCCGTCAGCTTCG
ACGGCCCCAACCTGCACATCAAAGCCCTCCGACCCATCCGGAAGGACGAG
CAGATCTTCATCACTTACATAGACGTAACGGACCCCTATCCTATTCGCCA
AGCTAACCTCCAATCTCGATACTACTTTACCTGCCACTGCTCGAAATGCA
CCCGAGAAGCAGGCTCACCAGCAGCAATAACCCTACACCCAGCACAGCAA
GAAGCCTACAAAATCCTCCAATCCCTATCAACCTTAGAGAATCCCATCCA
AACCCTCCTTCAAGCCCTCACCACCCTCCAAACCTTCTCCCTCCCCAAAA
CAACCCAACCCTCCATCTCCCTCCACGACGAACTCATCACCGCCCTCCTC
GCCAAACAGAAATACAAGTCTGCCTTCGCCCACGCCGCGGCCCGCTACCG
TGCTGTCGATCCGATCGTGTACCCGCTCCAGGGACATCCGATCCGGTTGC
TGCATGCGTGGGTGTTGGCTAGGTTGGCGATTCATTTGTCACAGGGCGTT
GAGGTACAGCATACTGGTGGTAATGAGGAAATTGTCTTGGAGAAGTACGA
GTTGAATTTTAATTTAATTATTTGGTCGGTGTTGGCGAAGTTGGTAGGGA
TGGAAAGCATGGGGGGCATGGGCCCTGGGTTTTGGAGGTTAGTGAAGAGG
GAGTTTCGGGCTGTGAGGGGGGAGTTTGTTGCTGCGGGGTTGGATCCGAG
GGGGTCGAGGGAGTTGGAGAGGGAGATTGGGAGGGAGTGGGGGAAGGTGG
ATGGGGTGGTTAGGGATTTGGGGTTTAGTATAGCTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007313-T1.utr5p1 | KJC3_007313-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR002893 |
| DBxref | InterPro:IPR001214 |
| DBxref | PFAM:PF01753 |
| DBxref | PFAM:PF00856 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2118641..2120258 + |
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