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KJC3_007336-T1, KJC3_007336-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007336-T1
Unique NameKJC3_007336-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2181113..2181752+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007336-T1 ID=KJC3_007336-T1|Name=KJC3_007336-T1|organism=Aspergillus niger KJC3|type=mRNA|length=640bp|location=Sequence derived from alignment at ch5:2181113..2181752+ (Aspergillus niger KJC3)
ATGGGTCGCGTCCGTACCAAGGTGAGCATACACGACCGCAATAATGAAGG AAAGAAAGAATATCAATTCTAACGAAAATGCGCGCGACAATAGACAGTCA AGCGTTCCGCTAAGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTC GACTTCGAGACCAACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTC CAAGCGTCTCCGCAACAAGGTTAGTGATTACCATCTTTTTTCTCCCGGAA ATTCCGGATATAATGGTCAAATGGCAATATACTAATAAGGAATTGGATTT AGATCGCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTGGCCCT GTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGA TCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCG GCCAGCTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGC GTAAGTTCTCCCTTATGGAATCTACATTCATGATTTATATCATGTCTAAC TCGATCGTGCTTTAGTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTC CCAGCAGCAGGCTCAGGAGCGCCCCCGCCGCTACCGGTAG
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Coding sequence (CDS) from alignment at ch5:2181113..2181752+

>KJC3_007336-T1 ID=KJC3_007336-T1|Name=KJC3_007336-T1|organism=Aspergillus niger KJC3|type=CDS|length=1680bp|location=Sequence derived from alignment at ch5:2181113..2181752+ (Aspergillus niger KJC3)
ATGGGTCGCGTCCGTACCAAGACAGTCAAGCGTTCCGCTAAGGTCGTTAT
CGAGCGTTACTACCCCAAGTTGACGCTCGACTTCGAGACCAACAAGCGTA
TCTGCGATGAGATCGCTATCATTGCCTCCAAGCGTCTCCGCAACAAGATC
GCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTGGCCCTGTCCG
CGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGATCAGT
ACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCGGCCAG
CTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGCTTCGA
CAACCTCAAGGTCAACGTCATCCCCGTCTCCCAGCAGCAGGCTCAGGAGC
GCCCCCGCCGCTACCGGTAGATGGGTCGCGTCCGTACCAAGACAGTCAAG
CGTTCCGCTAAGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTCGA
CTTCGAGACCAACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTCCA
AGCGTCTCCGCAACAAGATCGCTGGTTACACCACCCACCTTATGAAGCGT
ATCCAGCGTGGCCCTGTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGA
GCGTGAGCGCAAGGATCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTT
CCCAGACCGAGTCCGGCCAGCTCGACGTCGACTCTGAGACCAAGGACCTG
CTCAAGAGCATGGGCTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTC
CCAGCAGCAGGCTCAGGAGCGCCCCCGCCGCTACCGGTAGATGGGTCGCG
TCCGTACCAAGACAGTCAAGCGTTCCGCTAAGGTCGTTATCGAGCGTTAC
TACCCCAAGTTGACGCTCGACTTCGAGACCAACAAGCGTATCTGCGATGA
GATCGCTATCATTGCCTCCAAGCGTCTCCGCAACAAGATCGCTGGTTACA
CCACCCACCTTATGAAGCGTATCCAGCGTGGCCCTGTCCGCGGTATCTCC
TTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGATCAGTACGTTCCTGA
GGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCGGCCAGCTCGACGTCG
ACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGCTTCGACAACCTCAAG
GTCAACGTCATCCCCGTCTCCCAGCAGCAGGCTCAGGAGCGCCCCCGCCG
CTACCGGTAGATGGGTCGCGTCCGTACCAAGACAGTCAAGCGTTCCGCTA
AGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTCGACTTCGAGACC
AACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTCCAAGCGTCTCCG
CAACAAGATCGCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTG
GCCCTGTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGC
AAGGATCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGA
GTCCGGCCAGCTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCA
TGGGCTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTCCCAGCAGCAG
GCTCAGGAGCGCCCCCGCCGCTACCGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS17KJC3_007336Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007336-T1.exon1KJC3_007336-T1.exon1Aspergillus niger KJC3exon
KJC3_007336-T1.exon2KJC3_007336-T1.exon2Aspergillus niger KJC3exon
KJC3_007336-T1.exon3KJC3_007336-T1.exon3Aspergillus niger KJC3exon
KJC3_007336-T1.exon4KJC3_007336-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007336-T1.cdsKJC3_007336-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007336-T1KJC3_007336-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR018273
DBxrefInterPro:IPR036401
DBxrefInterPro:IPR001210
DBxrefPFAM:PF00833
Product40S ribosomal protein S17
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2181113..2181752 +