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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2196440..2200150- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007344-T1 ID=KJC3_007344-T1|Name=KJC3_007344-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3711bp|location=Sequence derived from alignment at ch5:2196440..2200150- (Aspergillus niger KJC3)
GCCGAAACAATCGAAATCCCACACGCCGACGCCGAACCGCTACGCCAGAC
GACGTGCCCCCTCTCCTCCCCACCCATCCCCCCCGACCGTTTGCCGGACA
ATTTCCTACTCGTCGACAGACGTACTTCTATCGCAAAATGTCCTACGAAG
AGCGCGCCAACGCGCACCCCAACCTGGGCGACGAGTCCGATGTGGAGGAG
GAAGCGCTTGTCAACGACTACCGCGAGCAGGTCAACTTCGATGATGGCAT
GAGCGAGTTGGACAGAACGACATCCCTTGGAGGTGGTTCCCAGACGCAGG
ACCTCCAGGCACAGCTCGCTGCTGCTGCCACCCCGCTCGAGTACCAGGCT
ACCCTCGAGACCAAGTTCGCAAGCTACGACAACTACTGCAGCCTTTTCCA
CTACATCCTGAACTCTGATGGTCCGGTTGAGCTCGAGGTTCCTTCTGTAT
GTACTACTCCGTCTGTCAGGAGCGGCGGGCAGCGGCTACGGCTGCAGCTA
TATTTGATACACGCTTCGCTGCCTTGATCTGCAATTGTGTGCGGTTGATT
CGCCGCGGTTGATACACTGTGCTAACTAGCCCATTTTATTGTCAATAGTA
CTACTGGGCCTGGGATGTCATCGACGAGTTCATCTACCAGTTCGAATCTT
TCTGCCGCTACCGCAACCGTGTCGCTCGCAGCGGCTCCAACGAGGAGGAG
GCCCAGCTTCTCCGTGAGAACCCGAACACGTGGGGTTGCTACTCCGTGCT
GAACGTCCTCTACTCCCTCATCCAAAGGTCGCAGATCAACGAGCAGTTGG
CTGCCATCAAGCGTGGTGAGGACCCCTTGGCGTTTGCCGGAGAGTATGGC
TCCCGCCCTCTGTACAAGATGCTGGGATACTTCTCCATCATTGGACTCCT
GCGTGTCCACTGTCTGCTGGGTGACTTCAGCCTTGCCCTCAAGACTCTCG
ACGACATCGAGATGAACAAGAAGGCCATGTTCGCCCGTGTTATGGCGGCC
CACTTCACCACCTACTACTATGTCGGTTTCTCCTACATGATGATGCGTCG
CTATGCCGATGCCATCCGCATGTTCAGCCACATCCTGGTCTACGTTTCCC
GGACCAAGAACTTCCAGAAGGGTGGCAACAGCTACGATGCCATCGCCAAG
AAGAACGACCAGATGTACGCTCTTATCGCCATCTGTGTCGCTCTCCACCC
CACTCGCCTGGATGACACCATCCACTCCGCCCTGCGTGAGAAGTACGGCG
AGCAGCTCAACCGCCTGCAGCATGGTGGCCCCGAGGCCCTTCCTCTGTTC
GAGGAGCTCTTCCGTTCGGCCTGCCCCAAGTTCATCAGCCCCACTCCTCC
CGACTTCGAGAACCCGGCCCTCAACGTCGACCCTGTTGACCACCACACCG
CCATCTTCATGGATGAGGTTAAGAACACCCTGTACAACCCTACCATCCGC
TCCTACCTGAAGCTCTACACCACCATGGACCTGAAGAAGCTGGCTGGCTT
CTTGGAGGTCGAGCCTGAGAAGCTCCGCTCTTGGCTCCTCATCAACAAGC
AGCGCAGCCGTCAGGTGCGCTGGGTTGAGGGTGGTCTTCTGGAGGGCGAG
CCGGTCAACGCCAACGACCTCGACTACGCTCTGGAGAACGACCTTATCCA
CGTCAGCGAGACCAAGGCCGGACGTCGTCTGGTGGACTGGTACCTCAGGA
ACCTTGCTCGTGTCTACTAAGTCCGAGTACGCTACAGCGACCCCTTCTTG
TGTCAAGGCGCATATCCCTCCGTCTTTTGACTTAAGATATGCGTCCGGTC
TGTAACAAGACCCACGAGGGGTACTCAATCTCAGCAAGGAACCACGAGAG
ACTCTTTGAAGTGCAAACGGAAAGAAGGGGGTGTGGTCCAGGAGATATCA
TCAGCTGGGAAGGGGATCGTCGGAAATCGAGTCCAAGTCGTGTTTTTCGA
ACGGGTCATTTACCCTCTCAGCTTTGTGGCCCGTTCACTCTCACGTCTTC
CCCACCCTACCAACATCATGATTTTTTTTTATCTTATCTATTTATTTATT
CTGTCCTCCGCTTCCATATCTTGCTTCGATTGTCCATGCTTCTCATTACT
CAGGGGGTTGGTTGCACAACCCTTGACCATCCTGGTTATACGGGTTTGGA
GTCGACAAAAAGAATTCTTTATTTCCTTTTTGTTTCATATTTGAGGAAAT
GTTCAAGGCGTATCCCATTATGCTTGTGTTTGGTTTTGCTTCCGGTTCGA
CACGGTCTGGTCTGTGTGCATCGAGCTGTTTGTGTCTTAGCTAGCAGAGG
ACAGACAGGGATGTAGAATCTGCATGATGAAATAGATGATGACTTAAGCA
TATGTTTTCCACAAAATATCTATAGTAAATAAGAAGAAGCAGGGCGTGGG
GGTATAGCATTACTCTATCTCATATTCTAGTATGATACACATATACAGTT
GAAGTTGGGTCCAGGAATGATACCTATCTAGCTAGGTCCTCATTCAGTCC
TGAACATCAAAACTAGTCCCGCATCCACAGTTACTCGTCGCGCGCGGGTT
ATCCACAATCTTAAACTGGCTTCCAATCAACTCCATCGTATAATCCACCG
TACTGCCCGAAAGAAGCTCCAGCGATGGCTCGTCCATAACTACTTTAGCT
TCGCCGGCGCCCGCTGCCTCCGCCTCACCTTCCTCAGGCTCGGCTGCGAA
GATAGTATCTTCCTCCGCATCGATCTTGGATGCGGCCTCCAGGGACATCA
GGTATTGGAATCCATGGCATCCACCGCTTGTGACGGTGATGCGGAGATGG
TGGTAGGGGTTTTCTTCTTTAGTGATGGAGGGGGATGAAGAGGGGTCTGT
TATTTCGCGAAGACGCTGTTGAAGACATGTTAGTTTGTGGTTTAACAAGG
TCACCTCAGCGAGTTGAAGAGCTAAAAAGTAATATTGTTCCCTCCGGAAG
AGGGAAAAAATTGCAAAAACATACAACAGAAGGGATTCGCTGGTGGTCAC
CCACCCAACTACTAACCTCCCGGCGTGTGGCTTAAGTACGGCTGAGCGGA
CGGGAAGCCCTGTTCTCCACACCCTGTGGTCGTATGTACTCGTTTCATAC
TTCAAAGGGCTTATATCGTGGCGGACAGTTAACTAGCTCCGGTGATCCGG
CGCATTTGTTGCCAATGCGCCTGACTCCGTTTCGCTTTCCGAACTCAACT
CAAGCCTTACCATCGCCACATTTTCGCAATCCTCCTTTGGAGATGTACAG
TATATGCATGCGGGGATAGAAAAAAAGGAAGGTTGTTTCAACGTACCTCC
GCAGCCCTCGGCGAGATATTGATCAACAAGTCCTTCCCATCTTCATCAAC
TCTCGGATTTTGTAGCACCTTGGTAGCTGGCCGGATGCTCGTAGTAGAAA
AGGAAGAGCGTTGTCCGAAAGCGTCAAAGCGGAATACTGATCGTGATGAT
GACGAGCTCGCCCGGGGGCAAAGGAATCTAGGCCGGAGCGTGGATCGCTG
GGAAACGGTATCGCAGAAAGATGCGGAGAAGCTCAATGTCGGCAACGTTG
CCGGGGAAAGTGCAGAAACCGCGGTGCGAGGAGAATGGGAGCGAGAGATC
CGGCGGGCGGCTGTTGAGAGGATCGGACGGGACATGTTTGTCGTCATAGA
GGGGAGAGTAGGTGTTAGGAAAGGCGACTGAAGGAGAGCTTTTGGTGAAA
GAGAATGAAGA back to topCoding sequence (CDS) from alignment at ch5:2196440..2200150- >KJC3_007344-T1 ID=KJC3_007344-T1|Name=KJC3_007344-T1|organism=Aspergillus niger KJC3|type=CDS|length=2862bp|location=Sequence derived from alignment at ch5:2196440..2200150- (Aspergillus niger KJC3)
TACTACTGGGCCTGGGATGTCATCGACGAGTTCATCTACCAGTTCGAATC
TTTCTGCCGCTACCGCAACCGTGTCGCTCGCAGCGGCTCCAACGAGGAGG
AGGCCCAGCTTCTCCGTGAGAACCCGAACACGTGGGGTTGCTACTCCGTG
CTGAACGTCCTCTACTCCCTCATCCAAAGGTCGCAGATCAACGAGCAGTT
GGCTGCCATCAAGCGTGGTGAGGACCCCTTGGCGTTTGCCGGAGAGTATG
GCTCCCGCCCTCTGTACAAGATGCTGGGATACTTCTCCATCATTGGACTC
CTGCGTGTCCACTGTCTGCTGGGTGACTTCAGCCTTGCCCTCAAGACTCT
CGACGACATCGAGATGAACAAGAAGGCCATGTTCGCCCGTGTTATGGCGG
CCCACTTCACCACCTACTACTATGTCGGTTTCTCCTACATGATGATGCGT
CGCTATGCCGATGCCATCCGCATGTTCAGCCACATCCTGGTCTACGTTTC
CCGGACCAAGAACTTCCAGAAGGGTGGCAACAGCTACGATGCCATCGCCA
AGAAGAACGACCAGATGTACGCTCTTATCGCCATCTGTGTCGCTCTCCAC
CCCACTCGCCTGGATGACACCATCCACTCCGCCCTGCGTGAGAAGTACGG
CGAGCAGCTCAACCGCCTGCAGCATGGTGGCCCCGAGGCCCTTCCTCTGT
TCGAGGAGCTCTTCCGTTCGGCCTGCCCCAAGTTCATCAGCCCCACTCCT
CCCGACTTCGAGAACCCGGCCCTCAACGTCGACCCTGTTGACCACCACAC
CGCCATCTTCATGGATGAGGTTAAGAACACCCTGTACAACCCTACCATCC
GCTCCTACCTGAAGCTCTACACCACCATGGACCTGAAGAAGCTGGCTGGC
TTCTTGGAGGTCGAGCCTGAGAAGCTCCGCTCTTGGCTCCTCATCAACAA
GCAGCGCAGCCGTCAGGTGCGCTGGGTTGAGGGTGGTCTTCTGGAGGGCG
AGCCGGTCAACGCCAACGACCTCGACTACGCTCTGGAGAACGACCTTATC
CACGTCAGCGAGACCAAGGCCGGACGTCGTCTGGTGGACTGGTACCTCAG
GAACCTTGCTCGTGTCTACTAAATGTCCTACGAAGAGCGCGCCAACGCGC
ACCCCAACCTGGGCGACGAGTCCGATGTGGAGGAGGAAGCGCTTGTCAAC
GACTACCGCGAGCAGGTCAACTTCGATGATGGCATGAGCGAGTTGGACAG
AACGACATCCCTTGGAGGTGGTTCCCAGACGCAGGACCTCCAGGCACAGC
TCGCTGCTGCTGCCACCCCGCTCGAGTACCAGGCTACCCTCGAGACCAAG
TTCGCAAGCTACGACAACTACTGCAGCCTTTTCCACTACATCCTGAACTC
TGATGGTCCGGTTGAGCTCGAGGTTCCTTCTTACTACTGGGCCTGGGATG
TCATCGACGAGTTCATCTACCAGTTCGAATCTTTCTGCCGCTACCGCAAC
CGTGTCGCTCGCAGCGGCTCCAACGAGGAGGAGGCCCAGCTTCTCCGTGA
GAACCCGAACACGTGGGGTTGCTACTCCGTGCTGAACGTCCTCTACTCCC
TCATCCAAAGGTCGCAGATCAACGAGCAGTTGGCTGCCATCAAGCGTGGT
GAGGACCCCTTGGCGTTTGCCGGAGAGTATGGCTCCCGCCCTCTGTACAA
GATGCTGGGATACTTCTCCATCATTGGACTCCTGCGTGTCCACTGTCTGC
TGGGTGACTTCAGCCTTGCCCTCAAGACTCTCGACGACATCGAGATGAAC
AAGAAGGCCATGTTCGCCCGTGTTATGGCGGCCCACTTCACCACCTACTA
CTATGTCGGTTTCTCCTACATGATGATGCGTCGCTATGCCGATGCCATCC
GCATGTTCAGCCACATCCTGGTCTACGTTTCCCGGACCAAGAACTTCCAG
AAGGGTGGCAACAGCTACGATGCCATCGCCAAGAAGAACGACCAGATGTA
CGCTCTTATCGCCATCTGTGTCGCTCTCCACCCCACTCGCCTGGATGACA
CCATCCACTCCGCCCTGCGTGAGAAGTACGGCGAGCAGCTCAACCGCCTG
CAGCATGGTGGCCCCGAGGCCCTTCCTCTGTTCGAGGAGCTCTTCCGTTC
GGCCTGCCCCAAGTTCATCAGCCCCACTCCTCCCGACTTCGAGAACCCGG
CCCTCAACGTCGACCCTGTTGACCACCACACCGCCATCTTCATGGATGAG
GTTAAGAACACCCTGTACAACCCTACCATCCGCTCCTACCTGAAGCTCTA
CACCACCATGGACCTGAAGAAGCTGGCTGGCTTCTTGGAGGTCGAGCCTG
AGAAGCTCCGCTCTTGGCTCCTCATCAACAAGCAGCGCAGCCGTCAGGTG
CGCTGGGTTGAGGGTGGTCTTCTGGAGGGCGAGCCGGTCAACGCCAACGA
CCTCGACTACGCTCTGGAGAACGACCTTATCCACGTCAGCGAGACCAAGG
CCGGACGTCGTCTGGTGGACTGGTACCTCAGGAACCTTGCTCGTGTCTAC
TAAATGTCCTACGAAGAGCGCGCCAACGCGCACCCCAACCTGGGCGACGA
GTCCGATGTGGAGGAGGAAGCGCTTGTCAACGACTACCGCGAGCAGGTCA
ACTTCGATGATGGCATGAGCGAGTTGGACAGAACGACATCCCTTGGAGGT
GGTTCCCAGACGCAGGACCTCCAGGCACAGCTCGCTGCTGCTGCCACCCC
GCTCGAGTACCAGGCTACCCTCGAGACCAAGTTCGCAAGCTACGACAACT
ACTGCAGCCTTTTCCACTACATCCTGAACTCTGATGGTCCGGTTGAGCTC
GAGGTTCCTTCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007344-T1.utr3p1 | KJC3_007344-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007344-T1.utr5p1 | KJC3_007344-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000717 |
| DBxref | InterPro:IPR019382 |
| DBxref | PFAM:PF10255 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2196440..2200150 - |
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