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KJC3_007345-T1, KJC3_007345-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007345-T1
Unique NameKJC3_007345-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2200295..2201854-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007345-T1 ID=KJC3_007345-T1|Name=KJC3_007345-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1560bp|location=Sequence derived from alignment at ch5:2200295..2201854- (Aspergillus niger KJC3)
GTAATCTTAAGTAGTAGCCTCACGATCACCAACCGACCATACTTCCCACT
TCTATATAAAGGCTGTTCCCGGCATCGCACCACAGTTGCTTTATACTTTT
TGATTTGAATCGTTACCAAAGTTTTACCGGTATCCTGCACCTTCGTCCGG
CACCATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCAGTACGGACT
TGCCTTGTTTACCTGATTTATTCTTTGACATGCGAAGCAAGGGATAACTA
ACAACTCATCACTTAGGTATCTACGGACAATGGTTTGTACCGCTCTTCTC
TGTTCCCTTTCTCGCCCGCTGCTGCCCAACTGTGCGCCTTTGCAACATTT
GCGAAAACAAATCATGGTTGCCTGGATCTTCAGCGCTTGGCGCTGTCATG
AAAGGACCTCCATCAGTTGCCGCCTTGGGCAACCGTGTACTCTGAATGAT
TGCGCATAAATTTTGGGGGACTGCGACAACAATGGAGCAATAATTATGGC
GTCTACCGGACTAGTTTGCTAATCGATATCTGACGTAGGACGGGCGTGAT
CTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCAACATCTTCTCGTTCG
ACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTGTGAGTACTCACCTGA
ATTTCTTACACTGGTCTCAGACGCTTACAATACACAGCATCTCTGGTTTG
ATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAATATGCCCCACATC
ACCGAAGTTCGATGCATTTATCCGACGCTTCACCACAAACTGGATGCGCG
CTGCAATGTATACAGTGATGAGTGTTGTGCAATGGCTTAGTCTTATCAAG
TCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTACTCATTGCCGGTTT
ATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTCGTCGGCAGCAAGA
CTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTAAGACTATGATCAG
AGACGTGATCTATGAAGCTAAGGTACGCCCATTCGCCTGCCATGCGGCTA
TTGTATATGCCGTCTTCAGCATGCGTCCTCCGAGCTCGAAATGAGCCAAA
TGTAGTTGTATGCTAATCATTTCCTGCAGGTGACTAACATGGAACTGAAA
AAGAGACGGCTAGCAGAACCATCTCTGGGCTGAATGCGCCACGATTATGA
ATCGACTGTGCTGTTCTTGACGCTGCCGAGCAGGGTCTTGTACTCGTATA
GCATACTGTTTTGAGAAATTGGGACCCTTACGGCTCGAGCTACTGAAGCT
TCTACTCATGCTTTGTTGATCTTTCTTCTTTGTGTTGTATTTCCAGTCCT
GTTCTTGCTCTTGAGACTTGCTCAAAAACTGTTGCAATGAGTTTTAGATG
AATCATGTAATATTTACCATCTCGCCCCAGCGAATACCCGATTAGCATCC
TGGCGATGAATGAATGGAATTGTTTGCATAAATTCTGCTGTAGGGGCCGT
GATCTATGAATACGCTCCCCACCGCGGAAACAAAAATGAACACATCTTAG
ATGAAGCGAT
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Coding sequence (CDS) from alignment at ch5:2200295..2201854-

>KJC3_007345-T1 ID=KJC3_007345-T1|Name=KJC3_007345-T1|organism=Aspergillus niger KJC3|type=CDS|length=1800bp|location=Sequence derived from alignment at ch5:2200295..2201854- (Aspergillus niger KJC3)
CATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAA
TATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACA
AACTGGATGCGCGCTGCAATGTATACAGTGATGAGTGTTGTGCAATGGCT
TAGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTAC
TCATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTC
GTCGGCAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTA
AGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCAAC
ATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTGTA
TCTACGGACAATGATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCA
CATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAA
TATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACA
AACTGGATGCGCGCTGCAATGTATACAGTGATGAGTGTTGTGCAATGGCT
TAGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTAC
TCATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTC
GTCGGCAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTA
AGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCAAC
ATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTGTA
TCTACGGACAATGATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCA
CATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAA
TATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACA
AACTGGATGCGCGCTGCAATGTATACAGTGATGAGTGTTGTGCAATGGCT
TAGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTAC
TCATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTC
GTCGGCAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTA
AGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCAAC
ATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTGTA
TCTACGGACAATGATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCA
CATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAA
TATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACA
AACTGGATGCGCGCTGCAATGTATACAGTGATGAGTGTTGTGCAATGGCT
TAGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTAC
TCATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTC
GTCGGCAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTA
AGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCAAC
ATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTGTA
TCTACGGACAATGATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TVP18KJC3_007345Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007345-T1KJC3_007345-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007345-T1.cdsKJC3_007345-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007345-T1.utr3p2KJC3_007345-T1.utr3p2Aspergillus niger KJC3three_prime_UTR
KJC3_007345-T1.utr3p1KJC3_007345-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007345-T1.exon5KJC3_007345-T1.exon5Aspergillus niger KJC3exon
KJC3_007345-T1.exon4KJC3_007345-T1.exon4Aspergillus niger KJC3exon
KJC3_007345-T1.exon3KJC3_007345-T1.exon3Aspergillus niger KJC3exon
KJC3_007345-T1.exon2KJC3_007345-T1.exon2Aspergillus niger KJC3exon
KJC3_007345-T1.exon1KJC3_007345-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007345-T1.utr5p1KJC3_007345-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019365
DBxrefPFAM:PF10233
ProductGolgi apparatus membrane protein tvp18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2200295..2201854 -
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