|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2275503..2277963+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007374-T1 ID=KJC3_007374-T1|Name=KJC3_007374-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2461bp|location=Sequence derived from alignment at ch5:2275503..2277963+ (Aspergillus niger KJC3)
GCGGTGATCAGTTGTCTATATATCCGAAATCTACATCAAGGAAAGGAGGA
GTACGAAGGAGCAACATGGAACATGGGATGCCACGCCAAGGCTTAAGGCA
GGTTAGGTAATGGTCGGTACTATTTATATAAGCAAGTCATGAGTGAACAG
AAAGAGGTTAACAAAGTTAGGTTATGCAGAAAAAGAAGGAATGTGCCTTA
GAGTTGTATTGGATAGAACGCTGCGAGAGACACCATAGATCTAAGAAGCG
TTAATATAGAGGAAAATCCATGTGTTGATAAGCCTATTCTGAGGTGTTCG
AGTCTTTCTCCACTCGACAGAATATACTAACGCCCGTGCATTCTCGCTCC
ATGATTTGCTCACCTGAGATGCTTCTAGCCACCAGTCTATGATGAAAAAC
ACCGTTCCCATGAATCCATTTTGCAGGCTGTCGTAGGTTAAGTGACCCTG
GCAGTTAAAAGGTCCAGCGAGGACGCTATCACATGTCAGTTGCTGCTCTT
GGCCGATCACTGCTACTCTGTATTCTCTGATAAGCTGATAGACTCAGTAG
GCCGCGCATACACAGTAACAACTCATTGCCACCCACAAATCATACCCACT
TATGCTTTCTCGGTCATGTCGATGTTCAAATTGAGAAAGAGATCGGCACT
GCTTTGGGTCAGGTACATGATGGCTGTGGGTGAGCCACAGGAACGATCGC
CACGTCCTGGTACCAGGTACCAGTCTAAACTTATTTAGGCAACTTCCTCC
ACGGCCTCCCCGGGGCTCCGCGGGGACTAAACCCCATACTATCAGGTACT
TCTTCTGAGATTGAAGTATAAGACGAGCGATGGCTGAGCGGCCTCATCAG
CAGTTCACTTTCAATTCAAGCACTTTTCTAGACACTTTTCCAATATGCCA
GCTACAAAGAAGGTAAGCTTATACAACTTCAGCTATATTATCTAGCTAAC
ATGTCTAATCAGGCCATCATCATCGGTGCAGGCCCCGCCGGCCTCGCTGC
CGCCCTCCAACTGCACCGTAACAACAACATTGCCATTACCGTATACGAGT
TACGGCCAGAACCAACCACTCTGGGCGGTGCTATAGGTTTATTCCCAAAT
GGAATGCGCTTGGTCCATCGACTAGGGCTTCATGAGGAAGTTGTCGCCCG
CGGATTCTCTGTCACCGACATGGAGATTCACTCGCTGCCAAACGGTGATA
TTGCCAAAGTCGACATTTCCGGCTGGGCAAATCGGCAGACTGGCTTCGAA
TATTTGCGCATACGTCGCAAGGACCTTCAGGGTGTTCTGCTTGACGCCGT
TGCAAAAGACCAAATTCCTGTCCACTACAACAAGCGCATTGTTTCAGTCT
CCGAGTCGCCAACAGATGTCACCGTAACCTTTTCCGACGGTTCAACTGAT
ACAGCCGATATCCTGCTCGGATGCGATGGACTTCACTCTAGTGTCCGTCG
ACTTCATGTCGACCCGTCCATTGTGCCCGAATACTCCGGTATCGCGGGAA
CGCAGTCCATCATTGACTGCACAGGGCTGCCGGAGGAGCTGAGTACACAT
GCCAACGCTTTTCTCACTCGCACTGGTATTCTGGCAATGATGCCGTGCTC
TCCGTCCGGGGATGAGCTCTTCTGGTTCTTCTCCCGGGAAACACCTATCC
CTCACTCGGAATCTGGCAATGCACGAGATGGGTGGGAGGAGCGACGTCAA
AAAGAGGTTGCAGAATATAAGGACACTATTCTGAACATCATCGGAGAAGG
CAAGGGTAAATGGCCGGAGGCATTGACAGAGATGGTCAATCGGACGGACG
CTGTTGGGTTTTATCCCATCTTCCGGCTCCCGCTGGGCGGGAAGTGGTAT
ACTTCTCGAACGGTGCTGCTCGGGGATGCAGCGCATGCGATGCAGCCTCA
TGCGGGCCAGGGAGTGTCTATGGCATTGGAGGATGTGTTCCTGCTATCGC
GATTACTGAAAGATGATCAGCGGAGTTTGGAAGACGCATTTGCCAAATAC
GAGGAGATCCGCAAACCGCGCATCACGGAGATATACAATCTGGCTGCCAA
GAACGGAAAGATGCGAAAAGATGTCAGTCCGTGGGGGTTGCGGATGAAGG
AGTACATGGCGTGGGCTGCTTATGGGCTATATAACCGATTAGGGTTGGAA
TCTTGGGGGATTGGTCAGAAGCATTTGGTCTATGATATTGACGAGGCCAA
GATCTGATTGGGCTTGAAATTTTCTCTTTTTCTTCTTTTTTCTTTTCTCT
TACTGTGAATATTTTCGGAGGGGTTCGGACTCTCTACTCATTTCTGTACC
TTAATGCGGCGCTAATAGCAATGTCTCGGAAGCAATTATGTTGGGAACTC
CATTAACCGGGAAGCTCTACGAGTGGTCTATTCAAGCCTAGAATATATGC
ACGGTGTCAGGGTATAATGACTCGTATTATCCATGTCCTAGGGGTATGGC
AAAAGCGCAGA back to topCoding sequence (CDS) from alignment at ch5:2275503..2277963+ >KJC3_007374-T1 ID=KJC3_007374-T1|Name=KJC3_007374-T1|organism=Aspergillus niger KJC3|type=CDS|length=1257bp|location=Sequence derived from alignment at ch5:2275503..2277963+ (Aspergillus niger KJC3)
ATGTCTAATCAGGCCATCATCATCGGTGCAGGCCCCGCCGGCCTCGCTGC
CGCCCTCCAACTGCACCGTAACAACAACATTGCCATTACCGTATACGAGT
TACGGCCAGAACCAACCACTCTGGGCGGTGCTATAGGTTTATTCCCAAAT
GGAATGCGCTTGGTCCATCGACTAGGGCTTCATGAGGAAGTTGTCGCCCG
CGGATTCTCTGTCACCGACATGGAGATTCACTCGCTGCCAAACGGTGATA
TTGCCAAAGTCGACATTTCCGGCTGGGCAAATCGGCAGACTGGCTTCGAA
TATTTGCGCATACGTCGCAAGGACCTTCAGGGTGTTCTGCTTGACGCCGT
TGCAAAAGACCAAATTCCTGTCCACTACAACAAGCGCATTGTTTCAGTCT
CCGAGTCGCCAACAGATGTCACCGTAACCTTTTCCGACGGTTCAACTGAT
ACAGCCGATATCCTGCTCGGATGCGATGGACTTCACTCTAGTGTCCGTCG
ACTTCATGTCGACCCGTCCATTGTGCCCGAATACTCCGGTATCGCGGGAA
CGCAGTCCATCATTGACTGCACAGGGCTGCCGGAGGAGCTGAGTACACAT
GCCAACGCTTTTCTCACTCGCACTGGTATTCTGGCAATGATGCCGTGCTC
TCCGTCCGGGGATGAGCTCTTCTGGTTCTTCTCCCGGGAAACACCTATCC
CTCACTCGGAATCTGGCAATGCACGAGATGGGTGGGAGGAGCGACGTCAA
AAAGAGGTTGCAGAATATAAGGACACTATTCTGAACATCATCGGAGAAGG
CAAGGGTAAATGGCCGGAGGCATTGACAGAGATGGTCAATCGGACGGACG
CTGTTGGGTTTTATCCCATCTTCCGGCTCCCGCTGGGCGGGAAGTGGTAT
ACTTCTCGAACGGTGCTGCTCGGGGATGCAGCGCATGCGATGCAGCCTCA
TGCGGGCCAGGGAGTGTCTATGGCATTGGAGGATGTGTTCCTGCTATCGC
GATTACTGAAAGATGATCAGCGGAGTTTGGAAGACGCATTTGCCAAATAC
GAGGAGATCCGCAAACCGCGCATCACGGAGATATACAATCTGGCTGCCAA
GAACGGAAAGATGCGAAAAGATGTCAGTCCGTGGGGGTTGCGGATGAAGG
AGTACATGGCGTGGGCTGCTTATGGGCTATATAACCGATTAGGGTTGGAA
TCTTGGGGGATTGGTCAGAAGCATTTGGTCTATGATATTGACGAGGCCAA
GATCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0071949 | FAD binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007374-T1.utr5p1 | KJC3_007374-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007374-T1.utr3p1 | KJC3_007374-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR002938 |
| DBxref | InterPro:IPR036188 |
| DBxref | PFAM:PF01494 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2275503..2277963 + |
|
