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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2393773..2396415+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007413-T1 ID=KJC3_007413-T1|Name=KJC3_007413-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2643bp|location=Sequence derived from alignment at ch5:2393773..2396415+ (Aspergillus niger KJC3)
CAAGTCCCAAGTCAGTCACTCTCCTCATCCTTCTTTCTCTTCTTCTTCTC
TTCGCGGTCGCTTTTTCTGTCCCGTTTCTACATCCAGCTGACCTGTGTGT
TTTGTCCTTCAGTGACCTGTTCGCTAGTCTACATACATACTTCAGGTCGT
TATCGCGGTGGGCCTGTCTTACTGATCTAGCATCGTAGCGCTTGCTTTTT
CCCCTCAACCCCACTTCCACCCAACTACTTCTGCATGCAACAGTAGGTAT
CTAATAAGTAATCATGGGCAAGCCGCGGGTTAGTTACTCCCCTTCCTGAA
AATATCACAGTTTTCGGTCCAATGTCTCACTCTGTCAGATGATCATCTTG
ATCCGCCATGCCCAATCAGAAGGAAACAAGAACCGAGAAATCCATCAGAC
TATCCCCGATCACCGAGTGAAACTCACCCCCGAAGGACACCGTCAGGCGC
AGGAAGCTGGCTCCCGTCTGCGTACACTCCTCCGACCAGATGATACCATT
CATTTCTTCACCTCCCCGTACCGTCGCACCCGAGAGACCACAGAGGGTAT
TCTGCAGTCCCTGTCCTCAGATTCACCGGCCCCGTCCCCTTTCCCAAGAC
ACACCATCAAGGTCTACGAAGAACCACGGCTGCGGGAGCAAGATTTTGGG
AACTTCCAGCCATGTTCAGCCGAGATGGAGCGTATGTGGCTCGAAAGGGC
AGACTATGGTCACTTCTTCTACCGAATCCCCAACGGTGAATCTGCTGCGG
ACGCCTACGACCGCGTCAGTGGGTTCAACGAGTCGCTGTGGCGTTTGTTT
GGAGAGGACGACTTCGCCAGTGTCTGCGTGCTCGTCACGCATGGCTTGAT
GACTCGTGTCTTCCTCATGAAGTGGTATCATTGGAGTGTGGAATACTTCG
AAGATCTCCGCAACATCAACCACTGCGAGTTCGTCATCCTGAAACTCAAC
CCAGACAACGGGAAATACGTTCTCCAGAACCAACTACGTACATGGTCTGA
TCTGCGGAGGGAGAAAGAAGAAGAGCGGCAGCGTGAGCGGGCAGCCAAGG
GGTTGGATCCGGTGCAGCCAGCACCAGCAGAGACGTCCGTCCCTATCCGT
CGCAAATGGGGTGGCTGTCCTGATGGATGTAATCACGGGGTCCGAAGACG
AAGCTCTCTACGTGTACCCCGTGGACACAACACAGATCATCCAAAGCATC
AGCATGATCCTCAGTCGAAGGAGACAACAACACACAGCGCCACTCACAAC
CACAGATCTCACGGAAACCAAAACGGCCACCCAAGACCAGTCCCGGCTGT
AACGGGGACAAGTACTCCGGTTGACCAGCACATGCTCAGAGCCCCGGAGC
CAGCTTTGGGAGATCGTTCCATCGACGCAAGGCCTCTTGGAAGGACCTTG
CCTTCCCCGGCTCAGCAGTACGAGTTCGAAGGTGTTCAGCTAGAAACCAC
GTCCACCTCTCAAGCAACTTTCCCAACACCCAACGCTTCCACTAGCACTA
TCAGTCACCTGGGCCAACCCATTCCGAACCCAAACCCGATACCCCGCCGC
CCTGGCCTCGCCCACCTTCACCGTGACAGCGAGGACCACCTCCTCCATCC
CCCAAACTGCAACTATGCTTACATCCACCTCGTCGGCCGTGACGGCGGCG
GTTCCATGAGCGGCGCAAATAGCCTAGCCCCGTCGGAGGACGAGCGCGAC
GAGAAGCTCCGCCCCAACATGCACGCTTATACCCACAGTCATAGACAAAC
TCACTCTCGCCCCAAACCGACTTCCTCTACCCATCAGATTAGACCATCTC
AAGACCTAGATAACGACGGCGATGACGAAAGCAGTTCCAAGCAGGCTGCG
CGACCACGACGTACCCGATCCCACAGCCATCATGCCCGGAACCCTCCGGG
CCTGGCACACCAAACCCTTAGCAAGCAAGTCGCCAACGCCCTCAGCCAGG
ATCGAGCAGGCCAAGACAGATCAGATGATGAGCCTCTCCCCACAGCTCCT
CCGAGTTCGAAGGCCGAGAACCAGCCAGTGGACGCACACAACCGTGAAGA
CGATCAATACGATGATCATGAACACTATCATCACCACGGCGACGACGAAG
AGGACGACTACAACGAAGAAGACGCCTCTTTCGAAGCTGAAAGGAAACAC
GACCAAAGCATCAGAGGTAGTGTATACTAGTACAGAACTACGGCAACCTC
ATACTTCATACCCATATACAAAGCATACAAGACAATTAATCAACCTCACA
TTCTCACATCATCCCCGTACAAAGAACCACTCTTACTCCTACAACGTACA
TATCACCTTCTAACCCCAAACTTCTTCATATAATCATGATCTCCGTCATC
GATTTTCGTCTACCTCAGCGCCTCGGGTTCACTCCCTCATGATGTACATA
CATCACACATCAGATATGCACCCTTCCATTCATCATCATCAATGCAAATG
AATCAAATAAACCGCACATCCCTAGATACCCCAGGCAATGAAATAAATTT
ATTTACCACGATATGTACAATCTATTCCAGAGCCCCTCCTTATTTCATTT
TACTTATTTTCCTCGCATTAGATTCACAAGATTCTGTTCAGATCTGTACT
TCTTATATTCCAATTGTATTTAGGTACCTAGTTTAACTTTTAC back to topCoding sequence (CDS) from alignment at ch5:2393773..2396415+ >KJC3_007413-T1 ID=KJC3_007413-T1|Name=KJC3_007413-T1|organism=Aspergillus niger KJC3|type=CDS|length=3714bp|location=Sequence derived from alignment at ch5:2393773..2396415+ (Aspergillus niger KJC3)
ATGGGCAAGCCGCGGATGATCATCTTGATCCGCCATGCCCAATCAGAAGG
AAACAAGAACCGAGAAATCCATCAGACTATCCCCGATCACCGAGTGAAAC
TCACCCCCGAAGGACACCGTCAGGCGCAGGAAGCTGGCTCCCGTCTGCGT
ACACTCCTCCGACCAGATGATACCATTCATTTCTTCACCTCCCCGTACCG
TCGCACCCGAGAGACCACAGAGGGTATTCTGCAGTCCCTGTCCTCAGATT
CACCGGCCCCGTCCCCTTTCCCAAGACACACCATCAAGGTCTACGAAGAA
CCACGGCTGCGGGAGCAAGATTTTGGGAACTTCCAGCCATGTTCAGCCGA
GATGGAGCGTATGTGGCTCGAAAGGGCAGACTATGGTCACTTCTTCTACC
GAATCCCCAACGGTGAATCTGCTGCGGACGCCTACGACCGCGTCAGTGGG
TTCAACGAGTCGCTGTGGCGTTTGTTTGGAGAGGACGACTTCGCCAGTGT
CTGCGTGCTCGTCACGCATGGCTTGATGACTCGTGTCTTCCTCATGAAGT
GGTATCATTGGAGTGTGGAATACTTCGAAGATCTCCGCAACATCAACCAC
TGCGAGTTCGTCATCCTGAAACTCAACCCAGACAACGGGAAATACGTTCT
CCAGAACCAACTACGTACATGGTCTGATCTGCGGAGGGAGAAAGAAGAAG
AGCGGCAGCGTGAGCGGGCAGCCAAGGGGTTGGATCCGGTGCAGCCAGCA
CCAGCAGAGACGTCCGTCCCTATCCGTCGCAAATGGGGTGGCTGTCCTGA
TGGATGTAATCACGGGGTCCGAAGACGAAGCTCTCTACGTGTACCCCGTG
GACACAACACAGATCATCCAAAGCATCAGCATGATCCTCAGTCGAAGGAG
ACAACAACACACAGCGCCACTCACAACCACAGATCTCACGGAAACCAAAA
CGGCCACCCAAGACCAGTCCCGGCTGTAACGGGGACAAGTACTCCGGTTG
ACCAGCACATGCTCAGAGCCCCGGAGCCAGCTTTGGGAGATCGTTCCATC
GACGCAAGGCCTCTTGGAAGGACCTTGCCTTCCCCGGCTCAGCAGTACGA
GTTCGAAGGTGTTCAGCTAGAAACCACGTCCACCTCTCAAGCAACTTTCC
CAACACCCAACGCTTCCACTAGCACTATCAGTCACCTGGGCCAACCCATT
CCGAACCCAAACCCGATACCCCGCCGCCCTGGCCTCGCCCACCTTCACCG
TGACAGCGAGGACCACCTCCTCCATCCCCCAAACTGCAACTATGCTTACA
TCCACCTCGTCGGCCGTGACGGCGGCGGTTCCATGAGCGGCGCAAATAGC
CTAGCCCCGTCGGAGGACGAGCGCGACGAGAAGCTCCGCCCCAACATGCA
CGCTTATACCCACAGTCATAGACAAACTCACTCTCGCCCCAAACCGACTT
CCTCTACCCATCAGATTAGACCATCTCAAGACCTAGATAACGACGGCGAT
GACGAAAGCAGTTCCAAGCAGGCTGCGCGACCACGACGTACCCGATCCCA
CAGCCATCATGCCCGGAACCCTCCGGGCCTGGCACACCAAACCCTTAGCA
AGCAAGTCGCCAACGCCCTCAGCCAGGATCGAGCAGGCCAAGACAGATCA
GATGATGAGCCTCTCCCCACAGCTCCTCCGAGTTCGAAGGCCGAGAACCA
GCCAGTGGACGCACACAACCGTGAAGACGATCAATACGATGATCATGAAC
ACTATCATCACCACGGCGACGACGAAGAGGACGACTACAACGAAGAAGAC
GCCTCTTTCGAAGCTGAAAGGAAACACGACCAAAGCATCAGAGGTAGTGT
ATACTAGATGGGCAAGCCGCGGATGATCATCTTGATCCGCCATGCCCAAT
CAGAAGGAAACAAGAACCGAGAAATCCATCAGACTATCCCCGATCACCGA
GTGAAACTCACCCCCGAAGGACACCGTCAGGCGCAGGAAGCTGGCTCCCG
TCTGCGTACACTCCTCCGACCAGATGATACCATTCATTTCTTCACCTCCC
CGTACCGTCGCACCCGAGAGACCACAGAGGGTATTCTGCAGTCCCTGTCC
TCAGATTCACCGGCCCCGTCCCCTTTCCCAAGACACACCATCAAGGTCTA
CGAAGAACCACGGCTGCGGGAGCAAGATTTTGGGAACTTCCAGCCATGTT
CAGCCGAGATGGAGCGTATGTGGCTCGAAAGGGCAGACTATGGTCACTTC
TTCTACCGAATCCCCAACGGTGAATCTGCTGCGGACGCCTACGACCGCGT
CAGTGGGTTCAACGAGTCGCTGTGGCGTTTGTTTGGAGAGGACGACTTCG
CCAGTGTCTGCGTGCTCGTCACGCATGGCTTGATGACTCGTGTCTTCCTC
ATGAAGTGGTATCATTGGAGTGTGGAATACTTCGAAGATCTCCGCAACAT
CAACCACTGCGAGTTCGTCATCCTGAAACTCAACCCAGACAACGGGAAAT
ACGTTCTCCAGAACCAACTACGTACATGGTCTGATCTGCGGAGGGAGAAA
GAAGAAGAGCGGCAGCGTGAGCGGGCAGCCAAGGGGTTGGATCCGGTGCA
GCCAGCACCAGCAGAGACGTCCGTCCCTATCCGTCGCAAATGGGGTGGCT
GTCCTGATGGATGTAATCACGGGGTCCGAAGACGAAGCTCTCTACGTGTA
CCCCGTGGACACAACACAGATCATCCAAAGCATCAGCATGATCCTCAGTC
GAAGGAGACAACAACACACAGCGCCACTCACAACCACAGATCTCACGGAA
ACCAAAACGGCCACCCAAGACCAGTCCCGGCTGTAACGGGGACAAGTACT
CCGGTTGACCAGCACATGCTCAGAGCCCCGGAGCCAGCTTTGGGAGATCG
TTCCATCGACGCAAGGCCTCTTGGAAGGACCTTGCCTTCCCCGGCTCAGC
AGTACGAGTTCGAAGGTGTTCAGCTAGAAACCACGTCCACCTCTCAAGCA
ACTTTCCCAACACCCAACGCTTCCACTAGCACTATCAGTCACCTGGGCCA
ACCCATTCCGAACCCAAACCCGATACCCCGCCGCCCTGGCCTCGCCCACC
TTCACCGTGACAGCGAGGACCACCTCCTCCATCCCCCAAACTGCAACTAT
GCTTACATCCACCTCGTCGGCCGTGACGGCGGCGGTTCCATGAGCGGCGC
AAATAGCCTAGCCCCGTCGGAGGACGAGCGCGACGAGAAGCTCCGCCCCA
ACATGCACGCTTATACCCACAGTCATAGACAAACTCACTCTCGCCCCAAA
CCGACTTCCTCTACCCATCAGATTAGACCATCTCAAGACCTAGATAACGA
CGGCGATGACGAAAGCAGTTCCAAGCAGGCTGCGCGACCACGACGTACCC
GATCCCACAGCCATCATGCCCGGAACCCTCCGGGCCTGGCACACCAAACC
CTTAGCAAGCAAGTCGCCAACGCCCTCAGCCAGGATCGAGCAGGCCAAGA
CAGATCAGATGATGAGCCTCTCCCCACAGCTCCTCCGAGTTCGAAGGCCG
AGAACCAGCCAGTGGACGCACACAACCGTGAAGACGATCAATACGATGAT
CATGAACACTATCATCACCACGGCGACGACGAAGAGGACGACTACAACGA
AGAAGACGCCTCTTTCGAAGCTGAAAGGAAACACGACCAAAGCATCAGAG
GTAGTGTATACTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007413-T1.utr5p1 | KJC3_007413-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029033 |
| DBxref | InterPro:IPR013078 |
| DBxref | PFAM:PF00300 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2393773..2396415 + |
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