You are here

Home

KJC3_007435-T1, KJC3_007435-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007435-T1
Unique NameKJC3_007435-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2459815..2462163-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007435-T1 ID=KJC3_007435-T1|Name=KJC3_007435-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2349bp|location=Sequence derived from alignment at ch5:2459815..2462163- (Aspergillus niger KJC3)
ATGGATTCCACAGCGGATTTTGGCTCGTTACAGCAACGGGTGCAGTCGTC
CCTGATGCAGGTGACGCGCACTGCCGGTCAACTTTCAGCCGAAGATCTCG
ATTTCCATCGCACCTCTAACGCAGAGGTTTCTGATTCCCTGGACGAGCAG
AGCAACCGACTCTTGTCGCTCACTTCTTCTATTTTGAAAGCCGCCACCGC
CGGAACCGATGTTTCTGCACCGACCTTAGACGACGAAGATTCCCTCGAAG
ATAATTGGCGCGGCGTCGTGGATGTCATCGATGCGCTATTGGAAAAGGCC
GACGCATGCTTGGATGAATTCACCGGTGTTATTAAGAAATTGAGCCCGTC
GCAACAGGATCAAGCTGCCGCTGCCGCTGCGAAGGCTTCGAAGAAGCAAC
CCGCTAAATTCCCGACCATTTACGACTACGGCCCGTCGAAGATCCCGAAG
CCGCAATTGCTGTTCGAACGCAAGGCCGATAACACCGATACCGCGCCTTT
CAAGCCTTTGCTTAAGACGAAGCCTCATGCCGTTGTTCCGCTGAAAGACT
CGTTAAAGTTGTCCGATTCCGCTGTCGGATATGTCAACCCGTACGAGAAG
GAGATTCGTGCCGCAAAGTTCCCCACTTCTTCCTACAGCGTGTCGCCGCC
TGTGGATTATCAGCCGTGGGAGTCGACAAAGGCGACTTTTGTGGATACTC
TGGAGGGAGTGAAGGAGATGTTGGAGGAACTTAAGGCCGCGAAGGAGATC
GCGATTGATTTGGAGCATCACGATGTGCACTCGTATCAGGGTCTTGTCTC
CTTGATGCAGATCAGCACTCGGGATAAGGATTGGGTTGTTGATACGCTTA
AGCCGTGGAGGGAGGAGCTGCAAGTTCTTAACGAAGTGTTCACGGATCCC
AACATCTTGAAGGTGCTTCACGGTTCCTCGATGGATATTATCTGGCTTCA
GCGCGACTTGGGGCTGTACGTCGTTGGCATGTTCGATACATACCATGCTG
CTTGCGCGTTGAACTACCCCAAGCGCAGTTTGAAGTTCCTGCTGCAGAAG
TTTGTCAACTTCGAAGCCGATAAACGTTACCAGATGGCCGACTGGCGCAT
TCGACCGATCCCGGAAGGCATGTTCGATTACGCTCGTTCGGATACTCACT
ACCTTCTTCACATCTACGACCACATTCGCAACGAACTTGTCGAAAACTCC
CTCCCCGACAACAACCTTATCGACTACGTCCTGGAGCAGTCTAAGAAGGA
AGCTCTGCAAGTATATGAGCGTCCTGTTTACGATGCTGCTACTGGTCAAG
GACCGGGTGGTTGGTACGACCTCCTTTCTCGCAATTCGGTCGTGGTCAAC
AGGGAACAGTTTGCCGTATTCAAAGCAGTACATCAGTGGCGTGACGAGGT
TGCTAGAGAGGAAGACGAGGGCGTGCAATGCGTGTTCCCGAAACACGTTC
TCTTCAGGGTTGCTCACACTATGCCGCTCGACTTGGGCACCCTGTTCCGG
ACATTGTCACCTGTGACACCAATTGTCCAAAACCGCGCTGTAGACCTTTT
GGAAGTCATCAAGAAGGCTAAGGATGAGGGCGCTGATGGCCCTGAATGGC
GTGACGTCTACGTCAAGCCAACCAGGGGTACACCGGCCGCGCCGGCGACA
CAGCCAGTCGATGTCCCGTCCCCGACCCCAGCAGACGAGGCCAATCTCCC
CACTGTTTCTCGCTACGAGGTCTCCCAATTCTGGGGTTCCGTGTTGGAGT
CACAAGAACCTCCCACGGTCCCTGCATACTCCGCCGTTGCTTCAGCCGAA
GCTCTCCGTCTCTCCCTCCCCCTTCCGCCTATGCCTAAAACCGTCTCCGA
AGCCCGCGAAAAGCTCGCACCCGCTCAACCTCAAACCCCGAAACCCGCTA
CCTCTGCACCCGCCGTTAAGGAAGAGAAGAAAGAGGACGAGAACAAGTAC
TTCACCGTCAAGGAAATGGGTGGACCACGTAAGCGCAAGGCCGCCCCCGC
AGAGACGGCCGAGCAATTGCAGTCCGCCTCATCGGATTTCGACACCACTG
ACGCCAGTTCCTCGTTGGACACTGAAGATAAGCCATCCAAGAAACAGCGC
CGCAAGGAGAAGAAGAACAAGCCCGCAGCACAACCCGAGACAGCTGCCGA
GGAGGACGGAGAAGAGGAGGAAGAGGAGGCTCCCTTCAACTACGAGTCCG
CTGCCTCTGTATTCAATGCCAACCCCAAGGCTACTTCGGGACTCCCGTCC
AGGCGTCGTTATAATCCCTATGCTAAGGTGCTCGATGCCCCGTCGGGAGT
GCGGAAGCAGAAACGCGAGACTGCCGGAAAGGCGTTTACGTTCCGGTGA
back to top

Coding sequence (CDS) from alignment at ch5:2459815..2462163-

>KJC3_007435-T1 ID=KJC3_007435-T1|Name=KJC3_007435-T1|organism=Aspergillus niger KJC3|type=CDS|length=2349bp|location=Sequence derived from alignment at ch5:2459815..2462163- (Aspergillus niger KJC3)
ATGGATTCCACAGCGGATTTTGGCTCGTTACAGCAACGGGTGCAGTCGTC
CCTGATGCAGGTGACGCGCACTGCCGGTCAACTTTCAGCCGAAGATCTCG
ATTTCCATCGCACCTCTAACGCAGAGGTTTCTGATTCCCTGGACGAGCAG
AGCAACCGACTCTTGTCGCTCACTTCTTCTATTTTGAAAGCCGCCACCGC
CGGAACCGATGTTTCTGCACCGACCTTAGACGACGAAGATTCCCTCGAAG
ATAATTGGCGCGGCGTCGTGGATGTCATCGATGCGCTATTGGAAAAGGCC
GACGCATGCTTGGATGAATTCACCGGTGTTATTAAGAAATTGAGCCCGTC
GCAACAGGATCAAGCTGCCGCTGCCGCTGCGAAGGCTTCGAAGAAGCAAC
CCGCTAAATTCCCGACCATTTACGACTACGGCCCGTCGAAGATCCCGAAG
CCGCAATTGCTGTTCGAACGCAAGGCCGATAACACCGATACCGCGCCTTT
CAAGCCTTTGCTTAAGACGAAGCCTCATGCCGTTGTTCCGCTGAAAGACT
CGTTAAAGTTGTCCGATTCCGCTGTCGGATATGTCAACCCGTACGAGAAG
GAGATTCGTGCCGCAAAGTTCCCCACTTCTTCCTACAGCGTGTCGCCGCC
TGTGGATTATCAGCCGTGGGAGTCGACAAAGGCGACTTTTGTGGATACTC
TGGAGGGAGTGAAGGAGATGTTGGAGGAACTTAAGGCCGCGAAGGAGATC
GCGATTGATTTGGAGCATCACGATGTGCACTCGTATCAGGGTCTTGTCTC
CTTGATGCAGATCAGCACTCGGGATAAGGATTGGGTTGTTGATACGCTTA
AGCCGTGGAGGGAGGAGCTGCAAGTTCTTAACGAAGTGTTCACGGATCCC
AACATCTTGAAGGTGCTTCACGGTTCCTCGATGGATATTATCTGGCTTCA
GCGCGACTTGGGGCTGTACGTCGTTGGCATGTTCGATACATACCATGCTG
CTTGCGCGTTGAACTACCCCAAGCGCAGTTTGAAGTTCCTGCTGCAGAAG
TTTGTCAACTTCGAAGCCGATAAACGTTACCAGATGGCCGACTGGCGCAT
TCGACCGATCCCGGAAGGCATGTTCGATTACGCTCGTTCGGATACTCACT
ACCTTCTTCACATCTACGACCACATTCGCAACGAACTTGTCGAAAACTCC
CTCCCCGACAACAACCTTATCGACTACGTCCTGGAGCAGTCTAAGAAGGA
AGCTCTGCAAGTATATGAGCGTCCTGTTTACGATGCTGCTACTGGTCAAG
GACCGGGTGGTTGGTACGACCTCCTTTCTCGCAATTCGGTCGTGGTCAAC
AGGGAACAGTTTGCCGTATTCAAAGCAGTACATCAGTGGCGTGACGAGGT
TGCTAGAGAGGAAGACGAGGGCGTGCAATGCGTGTTCCCGAAACACGTTC
TCTTCAGGGTTGCTCACACTATGCCGCTCGACTTGGGCACCCTGTTCCGG
ACATTGTCACCTGTGACACCAATTGTCCAAAACCGCGCTGTAGACCTTTT
GGAAGTCATCAAGAAGGCTAAGGATGAGGGCGCTGATGGCCCTGAATGGC
GTGACGTCTACGTCAAGCCAACCAGGGGTACACCGGCCGCGCCGGCGACA
CAGCCAGTCGATGTCCCGTCCCCGACCCCAGCAGACGAGGCCAATCTCCC
CACTGTTTCTCGCTACGAGGTCTCCCAATTCTGGGGTTCCGTGTTGGAGT
CACAAGAACCTCCCACGGTCCCTGCATACTCCGCCGTTGCTTCAGCCGAA
GCTCTCCGTCTCTCCCTCCCCCTTCCGCCTATGCCTAAAACCGTCTCCGA
AGCCCGCGAAAAGCTCGCACCCGCTCAACCTCAAACCCCGAAACCCGCTA
CCTCTGCACCCGCCGTTAAGGAAGAGAAGAAAGAGGACGAGAACAAGTAC
TTCACCGTCAAGGAAATGGGTGGACCACGTAAGCGCAAGGCCGCCCCCGC
AGAGACGGCCGAGCAATTGCAGTCCGCCTCATCGGATTTCGACACCACTG
ACGCCAGTTCCTCGTTGGACACTGAAGATAAGCCATCCAAGAAACAGCGC
CGCAAGGAGAAGAAGAACAAGCCCGCAGCACAACCCGAGACAGCTGCCGA
GGAGGACGGAGAAGAGGAGGAAGAGGAGGCTCCCTTCAACTACGAGTCCG
CTGCCTCTGTATTCAATGCCAACCCCAAGGCTACTTCGGGACTCCCGTCC
AGGCGTCGTTATAATCCCTATGCTAAGGTGCTCGATGCCCCGTCGGGAGT
GCGGAAGCAGAAACGCGAGACTGCCGGAAAGGCGTTTACGTTCCGGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000176nuclear exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_007435KJC3_007435Aspergillus niger KJC3gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007435-T1.cdsKJC3_007435-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007435-T1.exon1KJC3_007435-T1.exon1Aspergillus niger KJC3exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007435-T1KJC3_007435-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926158Y
DBxrefInterPro:IPR010997
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR012588
DBxrefInterPro:IPR002562
DBxrefInterPro:IPR002121
DBxrefPFAM:PF08066
DBxrefPFAM:PF00570
DBxrefPFAM:PF01612
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2459815..2462163 -
Powered by Drupal