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KJC3_007439-T1, KJC3_007439-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007439-T1
Unique NameKJC3_007439-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2466524..2469690-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007439-T1 ID=KJC3_007439-T1|Name=KJC3_007439-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3167bp|location=Sequence derived from alignment at ch5:2466524..2469690- (Aspergillus niger KJC3)
CAGCTTTGAGCCCATCCACTCCAACGACCGACAAGCAGGCGCACAAGTCT
CTTTCCTCGTTGGAGATAGACTATAGCACCATGTCATCTCGACCAGATCT
CAAGGTAAGCTCTACCTGTTTTAGGAACTTAAGAAGAGAAAAATCGGCTA
ACATTAAACTAATTACACTGTCTAGGTGGACGACGAAGTCGGCTTCATCC
GCTTCTATCGTTCCATTTCCTCCTCCTCTGACAATGACAACAACAACAAT
GAGACCATTCGAGTTTTCGACCGCGGAGACTGGTACTCCGCCCACGGTGC
CGAAGCTGAATTCATCGCCCGCACCGTCTACAAAACCACCTCTGTGATCC
GCAATCTGGGCCGCAGCGACACAGGCGGCCTGCCCTCCGTGACGATGAGC
GTGACTGTATTCCGCAATTTCTTACGCGAGGCGCTATTCCGACTCAATCG
GCGAGTGGAGATCTGGGGCTCTGCGAGCGGGCGCGGCGGACAGTGGAAGC
TCATTAAGCAGGCGAGTCCGGGGAACTTGCAGGATGTGGAAGAAGAACTG
GGGAGTGTAGGTGGGCTGAATATTGAGGCTGGAGCGCCGATCATTCTGGC
TGTGAAGATTTCTGCAAAGGCCGGGGAGGCGAGAAGTGTGGGGGTTTGTT
TTGCGGATGCGAGTGTAAGGGAGTTGGGTGTGAGTGAATTCTTGGATAAT
GATGTTTATTCGAATCTGGAGTCGCTGGTCATTCAGCTGGGGGTGAAGGA
GTGTCTTGTGCAGATGGATGCGGGGAGGAAGGATGTGGAATTGGGGAAGG
TGAGGAATATCATGGATAGTTGTGGGATTGCCGTGTCGGAGAGGCACAGC
GGTGATTTCGGGGTTAGGGATATCGAGCAGGACTTGACGAGGTTGTTGAG
GGATGAGAGGTCTGCCGGGACGCTGCCTCAGACTGAGTTGAAGTTGGCGA
TGGGATCCGCGGCGGCGTTGATCAAGTATCTGGGTGTTATGACGGATCCG
TCCAACTTCGGCCAGTATCGTCTCTATCAGCATGATCTGTCGCAATTCAT
GAAGCTGGATTCGTCGGCGCTGAGGGCGTTGAATCTCATGCCGGGTCCGC
GGGACGGATCTAAGTCGATGAGTTTGTTTGGGTTGCTGAATCATTGTAAG
ACGCCGGTGGGCAGCAGGCTGCTGGCGCAGTGGTTGAAGCAGCCGCTAAT
GGATAAAGCTGAGATTGAGAAGAGACAGCAGCTGGTGGAGTCGTTTGTGA
TGGACACGGAACTTCGGCAGACTATGCAGGAGGAGCATTTGCGCTCGATC
CCGGATTTGTATCGCTTGGCGAAGCGGTTTCAGAGGAAGCAGGCGACACT
GGAGGATGTCGTGCGTGTTTATCAGGTTGCCATTCGCCTGCCAGGCTTTG
TTGCGTCACTGGAGAATGTGATGGATGAACAGTATCAGACGCCTCTGGAA
GCGGAGTATACGTCCAAGCTGCGCAGCCATTCCGATAACCTGGCAAAGCT
GGAGGAGATGGTTGAGACGACGGTGGACTTGGATGCATTGGAGAACCACG
AGTTCATTATTAAGCCGGAGTTTGATGAGAGCTTGCGCATCATTCGCAAG
AAGCTGGATAAGCTGCGTCACGACATGGACTCGGAACACCGTCGTGTGGG
CCGGGATCTGGACCAAGAAGTTGACAAGAAGCTGTTCCTGGAGAATCATC
GTGTGCATGGCTGGTGCTTCCGATTGACTCGCAACGAGGCGGGCTGTATT
CGCAACAAAAGAGAGTACCAGGAGTGCTCAACTCAGAAGAACGGTGTCTA
CTTTACGACCTCGACAATGCAGGCGCTCCGTCGCGAGCACGACCAGCTGT
CATCTAACTACAATCGCACTCAGACTGGTTTGGTTAGCGAGGTTGTTGGT
GTGGCTGCCTCCTACTGCCCTGTCCTTGAGCAGCTTGCTGGCGTTTTGGC
TCACCTCGATGTCATTGTGAGCTTCGCGCATTGTGCCGTGCACGCCCCTA
CACCATATGTCCGTCCCAAGATTCACCCGCGTGGTACTGGAAACACGGTT
CTGAAGGAGGCCCGGCATCCTTGTATGGAAATGCAGGATGACATCTCTTT
TATCACCAACGACGTGTCGCTCATCCGTGATGAGTCTTCCTTCCTGATCA
TTACCGGTCCCAATATGGGTGGTAAATCGACCTACATCCGACAGATTGGC
GTCATTGCGCTGATGGCCCAGACTGGATGCTTCGTGCCATGCTCCGAGGC
GGAGCTGACTATTTTCGACTGCATTCTTGCTCGTGTTGGTGCGAGTGACT
CGCAGCTCAAGGGTGTGTCGACTTTCATGGCTGAGATGCTTGAGACCTCC
AACATCCTCAAGTCCGCGACCTCGGAGTCATTGATCATCATCGATGAACT
TGGTCGCGGAACAAGTACATACGATGGATTCGGCCTTGCATGGGCTATCT
CAGAGCACATCGTCACTGAGATTCGCTGTTTCGGCCTGTTCGCAACCCAC
TTCCACGAATTGACGGCCCTGGCCGATCGGTACCCGAAGTCAGCCAAGAA
CCTACATGTAGTGGCTTTTATTGGTGATGGCACGGGCAATGAGGAGGACA
GCAAAGACTCGAAGCGAGACCAGGTTACGTTGCTGTACCGTGTCGAACCG
GGCATCTGCGACCAGTCCTTCGGTATTCACGTTGCTGAATTGGTCCGCTT
TCCGGAGAAGGTAGTCAACATGGCGCGACAAAAGGCAGATGAGCTTGAGG
ACTTCACCTCCTCTGGGGCACAGGAAAAAGAGTCCATGTCACTTGACAAG
TACTCCCAGGAAGAAGTTGAAGAGGGCAGTGCTCTCCTCAAGGATATGTT
GCTGAAATGGAAGGAAGCTATTGAGGCACCTGGCAAGGACCTGACGGTTG
AAGAAAAGCGCCAGATCATGCGCGATCTTGTCAACAGTGATCCGAAGTTA
CAGGCGAACAAAGTGTTCCAGGGCATCAAAGCTTTGTAGTCATGGTATGG
ATTTGCTGCCATTCGGGTTTACAGCGGCTGGGAGTTCGGAATGGGGATTA
ATTGTATGTTTTCATGGGTCATGGGTATAGGTATAGAAATATTTTTTCTT
GTTTAATTCAGTTCAAGGCGCACAATACAAAAGCATGCCTTAAATCTTCT
TCATCTGATGTGTAGTA
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Coding sequence (CDS) from alignment at ch5:2466524..2469690-

>KJC3_007439-T1 ID=KJC3_007439-T1|Name=KJC3_007439-T1|organism=Aspergillus niger KJC3|type=CDS|length=5676bp|location=Sequence derived from alignment at ch5:2466524..2469690- (Aspergillus niger KJC3)
GTGGACGACGAAGTCGGCTTCATCCGCTTCTATCGTTCCATTTCCTCCTC
CTCTGACAATGACAACAACAACAATGAGACCATTCGAGTTTTCGACCGCG
GAGACTGGTACTCCGCCCACGGTGCCGAAGCTGAATTCATCGCCCGCACC
GTCTACAAAACCACCTCTGTGATCCGCAATCTGGGCCGCAGCGACACAGG
CGGCCTGCCCTCCGTGACGATGAGCGTGACTGTATTCCGCAATTTCTTAC
GCGAGGCGCTATTCCGACTCAATCGGCGAGTGGAGATCTGGGGCTCTGCG
AGCGGGCGCGGCGGACAGTGGAAGCTCATTAAGCAGGCGAGTCCGGGGAA
CTTGCAGGATGTGGAAGAAGAACTGGGGAGTGTAGGTGGGCTGAATATTG
AGGCTGGAGCGCCGATCATTCTGGCTGTGAAGATTTCTGCAAAGGCCGGG
GAGGCGAGAAGTGTGGGGGTTTGTTTTGCGGATGCGAGTGTAAGGGAGTT
GGGTGTGAGTGAATTCTTGGATAATGATGTTTATTCGAATCTGGAGTCGC
TGGTCATTCAGCTGGGGGTGAAGGAGTGTCTTGTGCAGATGGATGCGGGG
AGGAAGGATGTGGAATTGGGGAAGGTGAGGAATATCATGGATAGTTGTGG
GATTGCCGTGTCGGAGAGGCACAGCGGTGATTTCGGGGTTAGGGATATCG
AGCAGGACTTGACGAGGTTGTTGAGGGATGAGAGGTCTGCCGGGACGCTG
CCTCAGACTGAGTTGAAGTTGGCGATGGGATCCGCGGCGGCGTTGATCAA
GTATCTGGGTGTTATGACGGATCCGTCCAACTTCGGCCAGTATCGTCTCT
ATCAGCATGATCTGTCGCAATTCATGAAGCTGGATTCGTCGGCGCTGAGG
GCGTTGAATCTCATGCCGGGTCCGCGGGACGGATCTAAGTCGATGAGTTT
GTTTGGGTTGCTGAATCATTGTAAGACGCCGGTGGGCAGCAGGCTGCTGG
CGCAGTGGTTGAAGCAGCCGCTAATGGATAAAGCTGAGATTGAGAAGAGA
CAGCAGCTGGTGGAGTCGTTTGTGATGGACACGGAACTTCGGCAGACTAT
GCAGGAGGAGCATTTGCGCTCGATCCCGGATTTGTATCGCTTGGCGAAGC
GGTTTCAGAGGAAGCAGGCGACACTGGAGGATGTCGTGCGTGTTTATCAG
GTTGCCATTCGCCTGCCAGGCTTTGTTGCGTCACTGGAGAATGTGATGGA
TGAACAGTATCAGACGCCTCTGGAAGCGGAGTATACGTCCAAGCTGCGCA
GCCATTCCGATAACCTGGCAAAGCTGGAGGAGATGGTTGAGACGACGGTG
GACTTGGATGCATTGGAGAACCACGAGTTCATTATTAAGCCGGAGTTTGA
TGAGAGCTTGCGCATCATTCGCAAGAAGCTGGATAAGCTGCGTCACGACA
TGGACTCGGAACACCGTCGTGTGGGCCGGGATCTGGACCAAGAAGTTGAC
AAGAAGCTGTTCCTGGAGAATCATCGTGTGCATGGCTGGTGCTTCCGATT
GACTCGCAACGAGGCGGGCTGTATTCGCAACAAAAGAGAGTACCAGGAGT
GCTCAACTCAGAAGAACGGTGTCTACTTTACGACCTCGACAATGCAGGCG
CTCCGTCGCGAGCACGACCAGCTGTCATCTAACTACAATCGCACTCAGAC
TGGTTTGGTTAGCGAGGTTGTTGGTGTGGCTGCCTCCTACTGCCCTGTCC
TTGAGCAGCTTGCTGGCGTTTTGGCTCACCTCGATGTCATTGTGAGCTTC
GCGCATTGTGCCGTGCACGCCCCTACACCATATGTCCGTCCCAAGATTCA
CCCGCGTGGTACTGGAAACACGGTTCTGAAGGAGGCCCGGCATCCTTGTA
TGGAAATGCAGGATGACATCTCTTTTATCACCAACGACGTGTCGCTCATC
CGTGATGAGTCTTCCTTCCTGATCATTACCGGTCCCAATATGGGTGGTAA
ATCGACCTACATCCGACAGATTGGCGTCATTGCGCTGATGGCCCAGACTG
GATGCTTCGTGCCATGCTCCGAGGCGGAGCTGACTATTTTCGACTGCATT
CTTGCTCGTGTTGGTGCGAGTGACTCGCAGCTCAAGGGTGTGTCGACTTT
CATGGCTGAGATGCTTGAGACCTCCAACATCCTCAAGTCCGCGACCTCGG
AGTCATTGATCATCATCGATGAACTTGGTCGCGGAACAAGTACATACGAT
GGATTCGGCCTTGCATGGGCTATCTCAGAGCACATCGTCACTGAGATTCG
CTGTTTCGGCCTGTTCGCAACCCACTTCCACGAATTGACGGCCCTGGCCG
ATCGGTACCCGAAGTCAGCCAAGAACCTACATGTAGTGGCTTTTATTGGT
GATGGCACGGGCAATGAGGAGGACAGCAAAGACTCGAAGCGAGACCAGGT
TACGTTGCTGTACCGTGTCGAACCGGGCATCTGCGACCAGTCCTTCGGTA
TTCACGTTGCTGAATTGGTCCGCTTTCCGGAGAAGGTAGTCAACATGGCG
CGACAAAAGGCAGATGAGCTTGAGGACTTCACCTCCTCTGGGGCACAGGA
AAAAGAGTCCATGTCACTTGACAAGTACTCCCAGGAAGAAGTTGAAGAGG
GCAGTGCTCTCCTCAAGGATATGTTGCTGAAATGGAAGGAAGCTATTGAG
GCACCTGGCAAGGACCTGACGGTTGAAGAAAAGCGCCAGATCATGCGCGA
TCTTGTCAACAGTGATCCGAAGTTACAGGCGAACAAAGTGTTCCAGGGCA
TCAAAGCTTTGTAGATGTCATCTCGACCAGATCTCAAGGTGGACGACGAA
GTCGGCTTCATCCGCTTCTATCGTTCCATTTCCTCCTCCTCTGACAATGA
CAACAACAACAATGAGACCATTCGAGTTTTCGACCGCGGAGACTGGTACT
CCGCCCACGGTGCCGAAGCTGAATTCATCGCCCGCACCGTCTACAAAACC
ACCTCTGTGATCCGCAATCTGGGCCGCAGCGACACAGGCGGCCTGCCCTC
CGTGACGATGAGCGTGACTGTATTCCGCAATTTCTTACGCGAGGCGCTAT
TCCGACTCAATCGGCGAGTGGAGATCTGGGGCTCTGCGAGCGGGCGCGGC
GGACAGTGGAAGCTCATTAAGCAGGCGAGTCCGGGGAACTTGCAGGATGT
GGAAGAAGAACTGGGGAGTGTAGGTGGGCTGAATATTGAGGCTGGAGCGC
CGATCATTCTGGCTGTGAAGATTTCTGCAAAGGCCGGGGAGGCGAGAAGT
GTGGGGGTTTGTTTTGCGGATGCGAGTGTAAGGGAGTTGGGTGTGAGTGA
ATTCTTGGATAATGATGTTTATTCGAATCTGGAGTCGCTGGTCATTCAGC
TGGGGGTGAAGGAGTGTCTTGTGCAGATGGATGCGGGGAGGAAGGATGTG
GAATTGGGGAAGGTGAGGAATATCATGGATAGTTGTGGGATTGCCGTGTC
GGAGAGGCACAGCGGTGATTTCGGGGTTAGGGATATCGAGCAGGACTTGA
CGAGGTTGTTGAGGGATGAGAGGTCTGCCGGGACGCTGCCTCAGACTGAG
TTGAAGTTGGCGATGGGATCCGCGGCGGCGTTGATCAAGTATCTGGGTGT
TATGACGGATCCGTCCAACTTCGGCCAGTATCGTCTCTATCAGCATGATC
TGTCGCAATTCATGAAGCTGGATTCGTCGGCGCTGAGGGCGTTGAATCTC
ATGCCGGGTCCGCGGGACGGATCTAAGTCGATGAGTTTGTTTGGGTTGCT
GAATCATTGTAAGACGCCGGTGGGCAGCAGGCTGCTGGCGCAGTGGTTGA
AGCAGCCGCTAATGGATAAAGCTGAGATTGAGAAGAGACAGCAGCTGGTG
GAGTCGTTTGTGATGGACACGGAACTTCGGCAGACTATGCAGGAGGAGCA
TTTGCGCTCGATCCCGGATTTGTATCGCTTGGCGAAGCGGTTTCAGAGGA
AGCAGGCGACACTGGAGGATGTCGTGCGTGTTTATCAGGTTGCCATTCGC
CTGCCAGGCTTTGTTGCGTCACTGGAGAATGTGATGGATGAACAGTATCA
GACGCCTCTGGAAGCGGAGTATACGTCCAAGCTGCGCAGCCATTCCGATA
ACCTGGCAAAGCTGGAGGAGATGGTTGAGACGACGGTGGACTTGGATGCA
TTGGAGAACCACGAGTTCATTATTAAGCCGGAGTTTGATGAGAGCTTGCG
CATCATTCGCAAGAAGCTGGATAAGCTGCGTCACGACATGGACTCGGAAC
ACCGTCGTGTGGGCCGGGATCTGGACCAAGAAGTTGACAAGAAGCTGTTC
CTGGAGAATCATCGTGTGCATGGCTGGTGCTTCCGATTGACTCGCAACGA
GGCGGGCTGTATTCGCAACAAAAGAGAGTACCAGGAGTGCTCAACTCAGA
AGAACGGTGTCTACTTTACGACCTCGACAATGCAGGCGCTCCGTCGCGAG
CACGACCAGCTGTCATCTAACTACAATCGCACTCAGACTGGTTTGGTTAG
CGAGGTTGTTGGTGTGGCTGCCTCCTACTGCCCTGTCCTTGAGCAGCTTG
CTGGCGTTTTGGCTCACCTCGATGTCATTGTGAGCTTCGCGCATTGTGCC
GTGCACGCCCCTACACCATATGTCCGTCCCAAGATTCACCCGCGTGGTAC
TGGAAACACGGTTCTGAAGGAGGCCCGGCATCCTTGTATGGAAATGCAGG
ATGACATCTCTTTTATCACCAACGACGTGTCGCTCATCCGTGATGAGTCT
TCCTTCCTGATCATTACCGGTCCCAATATGGGTGGTAAATCGACCTACAT
CCGACAGATTGGCGTCATTGCGCTGATGGCCCAGACTGGATGCTTCGTGC
CATGCTCCGAGGCGGAGCTGACTATTTTCGACTGCATTCTTGCTCGTGTT
GGTGCGAGTGACTCGCAGCTCAAGGGTGTGTCGACTTTCATGGCTGAGAT
GCTTGAGACCTCCAACATCCTCAAGTCCGCGACCTCGGAGTCATTGATCA
TCATCGATGAACTTGGTCGCGGAACAAGTACATACGATGGATTCGGCCTT
GCATGGGCTATCTCAGAGCACATCGTCACTGAGATTCGCTGTTTCGGCCT
GTTCGCAACCCACTTCCACGAATTGACGGCCCTGGCCGATCGGTACCCGA
AGTCAGCCAAGAACCTACATGTAGTGGCTTTTATTGGTGATGGCACGGGC
AATGAGGAGGACAGCAAAGACTCGAAGCGAGACCAGGTTACGTTGCTGTA
CCGTGTCGAACCGGGCATCTGCGACCAGTCCTTCGGTATTCACGTTGCTG
AATTGGTCCGCTTTCCGGAGAAGGTAGTCAACATGGCGCGACAAAAGGCA
GATGAGCTTGAGGACTTCACCTCCTCTGGGGCACAGGAAAAAGAGTCCAT
GTCACTTGACAAGTACTCCCAGGAAGAAGTTGAAGAGGGCAGTGCTCTCC
TCAAGGATATGTTGCTGAAATGGAAGGAAGCTATTGAGGCACCTGGCAAG
GACCTGACGGTTGAAGAAAAGCGCCAGATCATGCGCGATCTTGTCAACAG
TGATCCGAAGTTACAGGCGAACAAAGTGTTCCAGGGCATCAAAGCTTTGT
AGATGTCATCTCGACCAGATCTCAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0030983mismatched DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSH2KJC3_007439Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007439-T1KJC3_007439-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007439-T1.cdsKJC3_007439-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007439-T1.utr3p1KJC3_007439-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007439-T1.exon2KJC3_007439-T1.exon2Aspergillus niger KJC3exon
KJC3_007439-T1.exon1KJC3_007439-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007439-T1.utr5p1KJC3_007439-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09260EPQ
DBxrefInterPro:IPR036187
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR011184
DBxrefInterPro:IPR007861
DBxrefInterPro:IPR036678
DBxrefInterPro:IPR007695
DBxrefInterPro:IPR007860
DBxrefInterPro:IPR016151
DBxrefInterPro:IPR000432
DBxrefInterPro:IPR007696
DBxrefPFAM:PF00488
DBxrefPFAM:PF05190
DBxrefPFAM:PF05192
DBxrefPFAM:PF05188
DBxrefPFAM:PF01624
ProductMutS-like protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2466524..2469690 -
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