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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2525425..2528697- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007459-T1 ID=KJC3_007459-T1|Name=KJC3_007459-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3273bp|location=Sequence derived from alignment at ch5:2525425..2528697- (Aspergillus niger KJC3)
ATTACTTATATTAAATCGCTTCCCCATCCTTCCTTCTCCCCGATCTTCAA
ATTCAGCCTCGTTTCAAGAGGAAAGATTCTGCCTCTGCACTCCCACTCTC
TCTACCCACGGACGATCCACTACTCCTACTACCACTACTATTACTATTCT
TACACTAACAGCTAACTGATTGACTGATTGACTGATTGAAACCTGCCTTT
CCCCATCCACTCACACCACGAATTCCTCCTGCTAAACTACGACTAATCTC
CCTCGGGTCCAATCCGTGCTTCCACTAAATCACAGCCAAGTCTTGAACTG
CTCCCCACTCCAATCATAATTACTCTATAGGGAGATTCTTTATCCTCATT
CACTTCTTCACCTTCCCCTCCTTAAAAAGACCTCCCCAACAACCTCCTTC
TTAAACCACCTCTTCTCCCCCTCCCCATCGCCGAAGCATTGTCGCCCGTC
TACCCCTCTTCCTCGCGCTGGTCCAAACTTCCCGACCAACCAACCAACAC
ATTGCTCTTCCCGTTCGCTCGCCTTCCTTTCCTCCTTCTCCCACCCCCTC
TTTATCGCCCTCCTCTTGTCTATCTCGCAATCATAGCGCACCTCGGCTTG
AGGTGTGTATGGGTCAATGTTGTCCATGCAGAAATCCCACACCTATGTGC
TCCCTCCATCCACCACCTATAATAATGTCACCGGTCTCCCTCACACCATG
CCATCGGCCAACCCGCCAGCTGAGCGTCGCGACTCCACCCGCTCGGTCAT
GTTGACGGACGTCCCCGCCCTCGGCGACTGCCCATTAGTAGACGACTCGT
CACTCTCGCACCGAAACAGCATCAGCACCACTGACGGCATATCTAATGAT
TCGCCCGCCTCGTGGGATGGCGACGCCCCCTCCGATAATTCTCCCTCTGC
CGAGGTCGACGTCAAGATTCAAGACGGCTTACACCATCCGTTTCCAACGA
CCGCAGACACCTCGCCGAAAACCTTCCGATTCAACGTGATCGCATCCCAC
GGCATGGACGCTTCCATGGACGAGGTAACACCCAAGATCGAGGAGATAGA
TGATGTGGACGAGTTGCAGAGCATAAAACCGGTGGGAGTGGAGACATCGA
TGGCCAATGCGAGTTCTACCCATCCGGATTCCACGGCTGCTCCCGTCAAC
GTCCCACGGAAACGTGGACGACCACGCAAACATCCGCTGCCAGCGCCCGG
GAATCAGATCAAAATCACCAAGGGTCGATCCAAAACGGGTTGTATCACTT
GTCGCCGGCGGAAGAAGAAATGCGACGAGACCAAGCCAGCGTAAAGCTCC
CGTCCTCCTTTGACTGGTCCATCCTGTGTCGCAACGGTCGCAGTGGTTAA
CTTTCTTTCCCTTCCTGCAGGTGTCTCAACTGTCAGAAGAATGCCGTGGT
ATGCGAGGGCTACCCGCCAAAAGAAATATGGAAGAGTGGTAAGCAGAAGC
TTGAGGATGGTAAGTGCACCTTGGACCGTGGCATGCTCGAGCTGCTTTGC
TGTGCGTATTTACTATTCCTGGTTGCTTATCCGGCGCCTTTGATCCAATC
ACCTTGACACTTGTGTGAACGTTCTGACGCCTTAGTTTCACAGCAGTTCG
CACCCAGAACATGGTTGCCCGCTCTCTACCTCTGCTTATCGACGGCATCG
AAACCGAGATTGACCGGCGCTTCCTCGATCATTTCGTCTACGGCTTTAGT
CGCGTTTTGACCCTGATCAACGATGACTCCAACCCGTTCAAGGAGATCTT
GCTCCCGATGGCCACTCAGCACCGGGGTTTGATGCACTCGCTCATGTGCC
TCTCGGGATCGCACCTGTCGGGTCTCCATCATGATCCAATGTTGGAGGAG
CGAAAGTTCTATCATTACCACCGCGCTATCAGGGATCTCAAGGACAATAT
CACAGCGTCTTCAGGTAATTCTGAGCAAGACCCTGAGCTTCTTATCGAAG
ATCCCATCATCGCATCCACAATTGCTCTCAGCTTGAACACCATCTGTGAA
GGGGAAACCAAAGGGGAATACAGACCCCACATGGATGCCGCCCGGTATTT
GCTGTCGACACAGCAACCGAGGAATGAGAAGTTCCGGCAGTTTATTGTCG
AGTTCTTCCAGTACCATGATGTCTCCAACTCCATCACTTCGCTGGATCGC
CGCCCCGCCCATCTGCAGGGCGGCTTACGGCTGCCTGACTTTGTGCCACA
CGCGCAGGCAGGGATGTTCCTTGGAGTCTTTGATGGTCTATTCAATTATA
TCTCTGAGGTAACTCGAATTCGTGACCGGATTCGACAGCGGTCCAATGAA
GGATACGAGCCTGCTGTTGACTACCAGATTCTGGGCGATGCCGTCTCCAT
CGACTCCGCCATTCGAGCTTGGGAGACCTCGTATACGCCCAACACGCCAA
ACTACTACCTGGCGCAACTATATCGCCAGTCCACCTGGGTCTACCTGTAC
CGCACCATCCGCCCGTCCCGACCAAGCGAGAAAATTGCACAGGTTGTGGA
CGATGGACTTTCTTTCCTGGATCAGCTGCCTCAGGATGCAGGCGCCTACA
GTATTGTGCTGATGCCACTGTTCCTCTTGGGCTGCTCTGCCTTCCTGCCC
CGCCAGCGGGAGAGGATCAAGAAGGGCTTTGAGACCCTCAAGGGCTACTC
CAACCTCCGCAACATCGAACCCGCCTTCAAGGTCGTTGAGCGAGTGTGGG
AAGTGATGGACACGAAAATGGAAGAAAGTTGGGACTGGGAGAAGATCATC
AGCGACATGAACATGGATTTCTTGATCACCTAGGCTACTTGCCGCTTCTA
TTTGCAATTTGCATGTTTTCTTTTTCGGTTCGGGCCGATTGCATGATTCG
TCGTTCTTACTGGCGACGAACTTTTCGTTGGTTCTCCGAGTCATTCGATG
TATGTATCTCTTTCTTCCTTTCTTTCCTTTTTCTTCTTCTTTTTCTTTTC
TCCTATTCTTTTTCTTTTTCTGGTCTACCGAATGGCGAACGGGCAACAGA
ACCCAAGTGGAGCAGCCTCAAAGCGAGACGGACGGACATGGCGTCAGCGG
GCATGGATAGGGGCACAGTTCCGTATACCAACATACCAAAAGGGACACTG
GCCGGTCGGAATGGTTCTTTGAGATGTACTTATATATATGACGGAGTATG
CGTCTGATGAGTCGTGATGATATTTTTCTTCTTTCTTTTTTATTCTTGAT
ACATGTATAAGATTACTGCCTTTGTATATACAGATAGTTAAGATTATGAT
ATTACCCTTTACCAAGCCTGGAT back to topCoding sequence (CDS) from alignment at ch5:2525425..2528697- >KJC3_007459-T1 ID=KJC3_007459-T1|Name=KJC3_007459-T1|organism=Aspergillus niger KJC3|type=CDS|length=5859bp|location=Sequence derived from alignment at ch5:2525425..2528697- (Aspergillus niger KJC3)
CAGTTCGCACCCAGAACATGGTTGCCCGCTCTCTACCTCTGCTTATCGAC
GGCATCGAAACCGAGATTGACCGGCGCTTCCTCGATCATTTCGTCTACGG
CTTTAGTCGCGTTTTGACCCTGATCAACGATGACTCCAACCCGTTCAAGG
AGATCTTGCTCCCGATGGCCACTCAGCACCGGGGTTTGATGCACTCGCTC
ATGTGCCTCTCGGGATCGCACCTGTCGGGTCTCCATCATGATCCAATGTT
GGAGGAGCGAAAGTTCTATCATTACCACCGCGCTATCAGGGATCTCAAGG
ACAATATCACAGCGTCTTCAGGTAATTCTGAGCAAGACCCTGAGCTTCTT
ATCGAAGATCCCATCATCGCATCCACAATTGCTCTCAGCTTGAACACCAT
CTGTGAAGGGGAAACCAAAGGGGAATACAGACCCCACATGGATGCCGCCC
GGTATTTGCTGTCGACACAGCAACCGAGGAATGAGAAGTTCCGGCAGTTT
ATTGTCGAGTTCTTCCAGTACCATGATGTCTCCAACTCCATCACTTCGCT
GGATCGCCGCCCCGCCCATCTGCAGGGCGGCTTACGGCTGCCTGACTTTG
TGCCACACGCGCAGGCAGGGATGTTCCTTGGAGTCTTTGATGGTCTATTC
AATTATATCTCTGAGGTAACTCGAATTCGTGACCGGATTCGACAGCGGTC
CAATGAAGGATACGAGCCTGCTGTTGACTACCAGATTCTGGGCGATGCCG
TCTCCATCGACTCCGCCATTCGAGCTTGGGAGACCTCGTATACGCCCAAC
ACGCCAAACTACTACCTGGCGCAACTATATCGCCAGTCCACCTGGGTCTA
CCTGTACCGCACCATCCGCCCGTCCCGACCAAGCGAGAAAATTGCACAGG
TTGTGGACGATGGACTTTCTTTCCTGGATCAGCTGCCTCAGGATGCAGGC
GCCTACAGTATTGTGCTGATGCCACTGTTCCTCTTGGGCTGCTCTGCCTT
CCTGCCCCGCCAGCGGGAGAGGATCAAGAAGGGCTTTGAGACCCTCAAGG
GCTACTCCAACCTCCGCAACATCGAACCCGCCTTCAAGGTCGTTGAGCGA
GTGTGGGAAGTGATGGACACGAAAATGGAAGAAAGTTGGGACTGGGAGAA
GATCATCAGCGACATGAACATGGATTTCTTGATCACCTAGGTGTCTCAAC
TGTCAGAAGAATGCCGTGGTATGCGAGGGCTACCCGCCAAAAGAAATATG
GAAGAGTGGTAAGCAGAAGCTTGAGGATGATGTTGTCCATGCAGAAATCC
CACACCTATGTGCTCCCTCCATCCACCACCTATAATAATGTCACCGGTCT
CCCTCACACCATGCCATCGGCCAACCCGCCAGCTGAGCGTCGCGACTCCA
CCCGCTCGGTCATGTTGACGGACGTCCCCGCCCTCGGCGACTGCCCATTA
GTAGACGACTCGTCACTCTCGCACCGAAACAGCATCAGCACCACTGACGG
CATATCTAATGATTCGCCCGCCTCGTGGGATGGCGACGCCCCCTCCGATA
ATTCTCCCTCTGCCGAGGTCGACGTCAAGATTCAAGACGGCTTACACCAT
CCGTTTCCAACGACCGCAGACACCTCGCCGAAAACCTTCCGATTCAACGT
GATCGCATCCCACGGCATGGACGCTTCCATGGACGAGGTAACACCCAAGA
TCGAGGAGATAGATGATGTGGACGAGTTGCAGAGCATAAAACCGGTGGGA
GTGGAGACATCGATGGCCAATGCGAGTTCTACCCATCCGGATTCCACGGC
TGCTCCCGTCAACGTCCCACGGAAACGTGGACGACCACGCAAACATCCGC
TGCCAGCGCCCGGGAATCAGATCAAAATCACCAAGGGTCGATCCAAAACG
GGTTGTATCACTTGTCGCCGGCGGAAGAAGAAATGCGACGAGACCAAGCC
AGCCAGTTCGCACCCAGAACATGGTTGCCCGCTCTCTACCTCTGCTTATC
GACGGCATCGAAACCGAGATTGACCGGCGCTTCCTCGATCATTTCGTCTA
CGGCTTTAGTCGCGTTTTGACCCTGATCAACGATGACTCCAACCCGTTCA
AGGAGATCTTGCTCCCGATGGCCACTCAGCACCGGGGTTTGATGCACTCG
CTCATGTGCCTCTCGGGATCGCACCTGTCGGGTCTCCATCATGATCCAAT
GTTGGAGGAGCGAAAGTTCTATCATTACCACCGCGCTATCAGGGATCTCA
AGGACAATATCACAGCGTCTTCAGGTAATTCTGAGCAAGACCCTGAGCTT
CTTATCGAAGATCCCATCATCGCATCCACAATTGCTCTCAGCTTGAACAC
CATCTGTGAAGGGGAAACCAAAGGGGAATACAGACCCCACATGGATGCCG
CCCGGTATTTGCTGTCGACACAGCAACCGAGGAATGAGAAGTTCCGGCAG
TTTATTGTCGAGTTCTTCCAGTACCATGATGTCTCCAACTCCATCACTTC
GCTGGATCGCCGCCCCGCCCATCTGCAGGGCGGCTTACGGCTGCCTGACT
TTGTGCCACACGCGCAGGCAGGGATGTTCCTTGGAGTCTTTGATGGTCTA
TTCAATTATATCTCTGAGGTAACTCGAATTCGTGACCGGATTCGACAGCG
GTCCAATGAAGGATACGAGCCTGCTGTTGACTACCAGATTCTGGGCGATG
CCGTCTCCATCGACTCCGCCATTCGAGCTTGGGAGACCTCGTATACGCCC
AACACGCCAAACTACTACCTGGCGCAACTATATCGCCAGTCCACCTGGGT
CTACCTGTACCGCACCATCCGCCCGTCCCGACCAAGCGAGAAAATTGCAC
AGGTTGTGGACGATGGACTTTCTTTCCTGGATCAGCTGCCTCAGGATGCA
GGCGCCTACAGTATTGTGCTGATGCCACTGTTCCTCTTGGGCTGCTCTGC
CTTCCTGCCCCGCCAGCGGGAGAGGATCAAGAAGGGCTTTGAGACCCTCA
AGGGCTACTCCAACCTCCGCAACATCGAACCCGCCTTCAAGGTCGTTGAG
CGAGTGTGGGAAGTGATGGACACGAAAATGGAAGAAAGTTGGGACTGGGA
GAAGATCATCAGCGACATGAACATGGATTTCTTGATCACCTAGGTGTCTC
AACTGTCAGAAGAATGCCGTGGTATGCGAGGGCTACCCGCCAAAAGAAAT
ATGGAAGAGTGGTAAGCAGAAGCTTGAGGATGATGTTGTCCATGCAGAAA
TCCCACACCTATGTGCTCCCTCCATCCACCACCTATAATAATGTCACCGG
TCTCCCTCACACCATGCCATCGGCCAACCCGCCAGCTGAGCGTCGCGACT
CCACCCGCTCGGTCATGTTGACGGACGTCCCCGCCCTCGGCGACTGCCCA
TTAGTAGACGACTCGTCACTCTCGCACCGAAACAGCATCAGCACCACTGA
CGGCATATCTAATGATTCGCCCGCCTCGTGGGATGGCGACGCCCCCTCCG
ATAATTCTCCCTCTGCCGAGGTCGACGTCAAGATTCAAGACGGCTTACAC
CATCCGTTTCCAACGACCGCAGACACCTCGCCGAAAACCTTCCGATTCAA
CGTGATCGCATCCCACGGCATGGACGCTTCCATGGACGAGGTAACACCCA
AGATCGAGGAGATAGATGATGTGGACGAGTTGCAGAGCATAAAACCGGTG
GGAGTGGAGACATCGATGGCCAATGCGAGTTCTACCCATCCGGATTCCAC
GGCTGCTCCCGTCAACGTCCCACGGAAACGTGGACGACCACGCAAACATC
CGCTGCCAGCGCCCGGGAATCAGATCAAAATCACCAAGGGTCGATCCAAA
ACGGGTTGTATCACTTGTCGCCGGCGGAAGAAGAAATGCGACGAGACCAA
GCCAGCCAGTTCGCACCCAGAACATGGTTGCCCGCTCTCTACCTCTGCTT
ATCGACGGCATCGAAACCGAGATTGACCGGCGCTTCCTCGATCATTTCGT
CTACGGCTTTAGTCGCGTTTTGACCCTGATCAACGATGACTCCAACCCGT
TCAAGGAGATCTTGCTCCCGATGGCCACTCAGCACCGGGGTTTGATGCAC
TCGCTCATGTGCCTCTCGGGATCGCACCTGTCGGGTCTCCATCATGATCC
AATGTTGGAGGAGCGAAAGTTCTATCATTACCACCGCGCTATCAGGGATC
TCAAGGACAATATCACAGCGTCTTCAGGTAATTCTGAGCAAGACCCTGAG
CTTCTTATCGAAGATCCCATCATCGCATCCACAATTGCTCTCAGCTTGAA
CACCATCTGTGAAGGGGAAACCAAAGGGGAATACAGACCCCACATGGATG
CCGCCCGGTATTTGCTGTCGACACAGCAACCGAGGAATGAGAAGTTCCGG
CAGTTTATTGTCGAGTTCTTCCAGTACCATGATGTCTCCAACTCCATCAC
TTCGCTGGATCGCCGCCCCGCCCATCTGCAGGGCGGCTTACGGCTGCCTG
ACTTTGTGCCACACGCGCAGGCAGGGATGTTCCTTGGAGTCTTTGATGGT
CTATTCAATTATATCTCTGAGGTAACTCGAATTCGTGACCGGATTCGACA
GCGGTCCAATGAAGGATACGAGCCTGCTGTTGACTACCAGATTCTGGGCG
ATGCCGTCTCCATCGACTCCGCCATTCGAGCTTGGGAGACCTCGTATACG
CCCAACACGCCAAACTACTACCTGGCGCAACTATATCGCCAGTCCACCTG
GGTCTACCTGTACCGCACCATCCGCCCGTCCCGACCAAGCGAGAAAATTG
CACAGGTTGTGGACGATGGACTTTCTTTCCTGGATCAGCTGCCTCAGGAT
GCAGGCGCCTACAGTATTGTGCTGATGCCACTGTTCCTCTTGGGCTGCTC
TGCCTTCCTGCCCCGCCAGCGGGAGAGGATCAAGAAGGGCTTTGAGACCC
TCAAGGGCTACTCCAACCTCCGCAACATCGAACCCGCCTTCAAGGTCGTT
GAGCGAGTGTGGGAAGTGATGGACACGAAAATGGAAGAAAGTTGGGACTG
GGAGAAGATCATCAGCGACATGAACATGGATTTCTTGATCACCTAGGTGT
CTCAACTGTCAGAAGAATGCCGTGGTATGCGAGGGCTACCCGCCAAAAGA
AATATGGAAGAGTGGTAAGCAGAAGCTTGAGGATGATGTTGTCCATGCAG
AAATCCCACACCTATGTGCTCCCTCCATCCACCACCTATAATAATGTCAC
CGGTCTCCCTCACACCATGCCATCGGCCAACCCGCCAGCTGAGCGTCGCG
ACTCCACCCGCTCGGTCATGTTGACGGACGTCCCCGCCCTCGGCGACTGC
CCATTAGTAGACGACTCGTCACTCTCGCACCGAAACAGCATCAGCACCAC
TGACGGCATATCTAATGATTCGCCCGCCTCGTGGGATGGCGACGCCCCCT
CCGATAATTCTCCCTCTGCCGAGGTCGACGTCAAGATTCAAGACGGCTTA
CACCATCCGTTTCCAACGACCGCAGACACCTCGCCGAAAACCTTCCGATT
CAACGTGATCGCATCCCACGGCATGGACGCTTCCATGGACGAGGTAACAC
CCAAGATCGAGGAGATAGATGATGTGGACGAGTTGCAGAGCATAAAACCG
GTGGGAGTGGAGACATCGATGGCCAATGCGAGTTCTACCCATCCGGATTC
CACGGCTGCTCCCGTCAACGTCCCACGGAAACGTGGACGACCACGCAAAC
ATCCGCTGCCAGCGCCCGGGAATCAGATCAAAATCACCAAGGGTCGATCC
AAAACGGGTTGTATCACTTGTCGCCGGCGGAAGAAGAAATGCGACGAGAC
CAAGCCAGC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007459-T1.utr3p1 | KJC3_007459-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007459-T1.utr5p1 | KJC3_007459-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2525425..2528697 - |
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