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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2583720..2585289- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007473-T1 ID=KJC3_007473-T1|Name=KJC3_007473-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1570bp|location=Sequence derived from alignment at ch5:2583720..2585289- (Aspergillus niger KJC3)
CCTCTCTCAGTTGCTGCCTTTTCCGTGGACTCTCACCTTCTGGGCGGATC
CCTGGCACTGGACTGTACGTTGCTGCTGGTTTCTTTAGTTAAGATCCAGT
CCATCTCATCTCAGGTCCCGTCGTACCTGTTGTGCTGCAAGTAGCCTTCT
GGTGCCGGATTCCCCCGGTCAAGCGGAGCAACCGGGTGTTTGCCTCGAGA
CAGAACCCCTAGGCTGTGACGAACAGATCAAGATCACCGTCGCTGTTTCT
ATACATACTCATTGGGAGACCTGACATCGTGATTCTTTCTTTTAAGCAAA
TATACATCTGGATTTAAAGAATGGCCACCCCGGCTCAATGTTACTACTGT
TTCGAGACCCTTGCTGCCTCCTATAGGCGCAGGGAACCCATCAGTCTTGC
GTCTGTGGAAGAGCTCTGGGAACAGCACGAACAGTATAAAAAGCTCGCCG
CGTTAGATGAGGACGACGATTCGCAATTTGTAGACGAGGACGAGAACACC
GCGCCGCTTTCTGGAAAGAGCAGTCGCTCTCAGAAGATCAAAGTGCCCCG
AGTCAGCCGACTTCAGTCTGGCTCGAGCTCTTCTACAACACAATCCCTCG
CGTCTACCAACTCATCGCAATCTGTCTTGTCAAGCTCAACCACAGTCACG
ACACCCAGCTCCTCCTCGGACACGGCCGGTGGCAAGCCGAGAGAAGACAA
ATATCCTCTCTTTGTAACATGGAATACCGTTTCGAAACACGGTCACAAGT
CACTCCGGGGTTGCATTGGCACATTTGAGGCGCAGGAGCTTGCCGAGGGC
CTGAAATCTTACGCTCTCACGTCGTACGTATATCCCTTTCACCATCCATG
AGACCGGGCCTTCCACCTACACCTTGGCAAGGCTCGCGCATGCTAACCGC
CCACAGCGCATTTGATGATACTCGGTTTTCCCCGATCCCGGAGTCTCTTC
TGCCCTCTCTCTCTTGCTCATTGACACTTCTCGGGTCTTTCGAGCCATGC
ACCAACGCTCTGGACTGGATCCTTGGGGTGCATGGCCTTCGCATCTCCTT
CATTCATCGCGGCAGACGCTATGGCGCAACCTACCTCCCTGATGTCGCGG
TCGAGCAAGGATGGACTAAAGAAGAGACCGTCAACAGCCTGATGCACAAA
GCAGGCTGGGATGGGCCTTCCGAGAGCGTGGCGAGACGGTTTTTGCGAGG
CAGCAGCAATGCTGGTCATGGGACTGCCGGCGCAACCAAGCCATGGGAGC
AGGTCTCCGATTTCCGAGCCGTCAAGTATCAGGGCCTCAAGGCCAGCAGC
AGCTATGCGGAATGGCAAGAATGGCGGCAGTGGGTCCTCTCGCTGGACGA
TGGGAGCCAGCAGCTCTTGAGCTGACAGCCAACCAATGATCCCATTCAAC
CTGGATGTTTAATGATGCGATGGCGTCAGTGAGACGAGAGGCGTTTTATT
CTTTGGTTATTTTATGCATTTGGGACATATCTACCACATGTCATGTAAAC
AGACATCCAACGTACTACACAATCCGTTTATAAGGACATACTAATCGGGA
CAACTCCATCTTTCGGGAAA back to topCoding sequence (CDS) from alignment at ch5:2583720..2585289- >KJC3_007473-T1 ID=KJC3_007473-T1|Name=KJC3_007473-T1|organism=Aspergillus niger KJC3|type=CDS|length=1944bp|location=Sequence derived from alignment at ch5:2583720..2585289- (Aspergillus niger KJC3)
CGCATTTGATGATACTCGGTTTTCCCCGATCCCGGAGTCTCTTCTGCCCT
CTCTCTCTTGCTCATTGACACTTCTCGGGTCTTTCGAGCCATGCACCAAC
GCTCTGGACTGGATCCTTGGGGTGCATGGCCTTCGCATCTCCTTCATTCA
TCGCGGCAGACGCTATGGCGCAACCTACCTCCCTGATGTCGCGGTCGAGC
AAGGATGGACTAAAGAAGAGACCGTCAACAGCCTGATGCACAAAGCAGGC
TGGGATGGGCCTTCCGAGAGCGTGGCGAGACGGTTTTTGCGAGGCAGCAG
CAATGCTGGTCATGGGACTGCCGGCGCAACCAAGCCATGGGAGCAGGTCT
CCGATTTCCGAGCCGTCAAGTATCAGGGCCTCAAGGCCAGCAGCAGCTAT
GCGGAATGGCAAGAATGGCGGCAGTGGGTCCTCTCGCTGGACGATGGGAG
CCAGCAGCTCTTGAGCTGAATGGCCACCCCGGCTCAATGTTACTACTGTT
TCGAGACCCTTGCTGCCTCCTATAGGCGCAGGGAACCCATCAGTCTTGCG
TCTGTGGAAGAGCTCTGGGAACAGCACGAACAGTATAAAAAGCTCGCCGC
GTTAGATGAGGACGACGATTCGCAATTTGTAGACGAGGACGAGAACACCG
CGCCGCTTTCTGGAAAGAGCAGTCGCTCTCAGAAGATCAAAGTGCCCCGA
GTCAGCCGACTTCAGTCTGGCTCGAGCTCTTCTACAACACAATCCCTCGC
GTCTACCAACTCATCGCAATCTGTCTTGTCAAGCTCAACCACAGTCACGA
CACCCAGCTCCTCCTCGGACACGGCCGGTGGCAAGCCGAGAGAAGACAAA
TATCCTCTCTTTGTAACATGGAATACCGTTTCGAAACACGGTCACAAGTC
ACTCCGGGGTTGCATTGGCACATTTGAGGCGCAGGAGCTTGCCGAGGGCC
TGAAATCTTACGCTCTCACGTCCGCATTTGATGATACTCGGTTTTCCCCG
ATCCCGGAGTCTCTTCTGCCCTCTCTCTCTTGCTCATTGACACTTCTCGG
GTCTTTCGAGCCATGCACCAACGCTCTGGACTGGATCCTTGGGGTGCATG
GCCTTCGCATCTCCTTCATTCATCGCGGCAGACGCTATGGCGCAACCTAC
CTCCCTGATGTCGCGGTCGAGCAAGGATGGACTAAAGAAGAGACCGTCAA
CAGCCTGATGCACAAAGCAGGCTGGGATGGGCCTTCCGAGAGCGTGGCGA
GACGGTTTTTGCGAGGCAGCAGCAATGCTGGTCATGGGACTGCCGGCGCA
ACCAAGCCATGGGAGCAGGTCTCCGATTTCCGAGCCGTCAAGTATCAGGG
CCTCAAGGCCAGCAGCAGCTATGCGGAATGGCAAGAATGGCGGCAGTGGG
TCCTCTCGCTGGACGATGGGAGCCAGCAGCTCTTGAGCTGAATGGCCACC
CCGGCTCAATGTTACTACTGTTTCGAGACCCTTGCTGCCTCCTATAGGCG
CAGGGAACCCATCAGTCTTGCGTCTGTGGAAGAGCTCTGGGAACAGCACG
AACAGTATAAAAAGCTCGCCGCGTTAGATGAGGACGACGATTCGCAATTT
GTAGACGAGGACGAGAACACCGCGCCGCTTTCTGGAAAGAGCAGTCGCTC
TCAGAAGATCAAAGTGCCCCGAGTCAGCCGACTTCAGTCTGGCTCGAGCT
CTTCTACAACACAATCCCTCGCGTCTACCAACTCATCGCAATCTGTCTTG
TCAAGCTCAACCACAGTCACGACACCCAGCTCCTCCTCGGACACGGCCGG
TGGCAAGCCGAGAGAAGACAAATATCCTCTCTTTGTAACATGGAATACCG
TTTCGAAACACGGTCACAAGTCACTCCGGGGTTGCATTGGCACATTTGAG
GCGCAGGAGCTTGCCGAGGGCCTGAAATCTTACGCTCTCACGTC back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007473-T1.utr3p1 | KJC3_007473-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007473-T1.utr5p1 | KJC3_007473-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263ZSC |
| DBxref | InterPro:IPR036071 |
| DBxref | InterPro:IPR027485 |
| DBxref | InterPro:IPR002733 |
| DBxref | InterPro:IPR023473 |
| DBxref | PFAM:PF01871 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2583720..2585289 - |
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