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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2620257..2621555- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007488-T1 ID=KJC3_007488-T1|Name=KJC3_007488-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1299bp|location=Sequence derived from alignment at ch5:2620257..2621555- (Aspergillus niger KJC3)
TCCTAGACTCCCAAACATTACTTTTCGATAGCTTTAAGTTGACTGCAGTT
TAATTCTACTTTCGAAGCACTGCGACGCTCTTACACGCTTCCGAATACCC
TAGTTCTTGCCAACTTATCTCCCATATCTGACAATATGCCTAGCGACCGG
GACGAAGAGCAGCCCGTCATATGCGTTTTGTAAGTGATATCCCCAGTACT
GATGTACATTCTACCTACGACGGTGGACAAGAATGTGTCAACGCCAGTTC
CCCTGAAGTTATATAATCAGCGAACTAACTCTCCCATTCAGTTGTGGCGC
GCAGCCCGGCGATTCTCCCGAGTTTCTGGCAGCCGCTCGAGCACTTGCAC
ATGAACTACACGCCGCAAACGCGAAACTAGTCTACGGAGGTGGAACCAAA
GGATTGATGGGCGAGGTCGCGAAGACTCTAGTATCACTCTCTGGCCCATC
TGCCGTGCATGGCTTCATACCCCGGGCATTGGTAGCATACTATCCCGATG
CGGACGTCGGCAAGTCCCAGAATGACGGGAAACAACCAGAGCGAATCCAA
GCTCCAGGGTCTTCGCTGGCTGAGGGCGAATACGGGAGGATTACCGTCGT
GGACAGCATGCATGAGCGAAAACAAAAAATGGCCGAGCAAGTTCTCGCCG
GTGGCCCTGGGTCAGGATTTGTAGCCCTTCCGGGCGGTTATGGGACCCTG
GAGGAAGTGGCAGAGAACCAACTTGGGATTCATGATAGAGGAATTGTGTT
GTTGAACGTTAATGGGTTTTGGGATGGTCTTGTCGCGTGGATTGCTAAGG
CTGCTCAACGGGGATTTATTGGGCCGGCGAATAAAGATATTATGGTGGAA
TGTAAGGAGGTGGGCGAGGTTATTGGGGCGCTTAAAGCCTATAACCCAAG
TGGCGGGAGGCTGAACCTCTCTTGGGGCTGCAAGTGAGAGAAAGAGGCGA
GCGAGGTTGGGATGGGGATGGGCGGTATTTCGAGGGCCGGAGAACAAATC
TAAAATCCGGGGCTTCCGACAGATTGTGCTCACTAAAAGTACTAAACCTT
AAATGTTGTCGGTCGCTGGCCAATTAACTTCTTCCAGTGCAATTCCATTA
TCAACAAGCCTGCCCGGGTTTCTGCCTGTCGTCCCATAATTGATCGCTAG
CGGTGACGTAACAGAATAGCAGAAGAGATCCCCGAGGTTTGAAGTGATTC
AATAGCACATTATACTTCAGTTACACTCCTTGTTTCTGTCCTTAGCCCTG
CCAATCTTGTATGTGGGCCCGGAATGGCTGGAGTGCATTTACCTGCCGG back to topCoding sequence (CDS) from alignment at ch5:2620257..2621555- >KJC3_007488-T1 ID=KJC3_007488-T1|Name=KJC3_007488-T1|organism=Aspergillus niger KJC3|type=CDS|length=1380bp|location=Sequence derived from alignment at ch5:2620257..2621555- (Aspergillus niger KJC3)
TTGTGGCGCGCAGCCCGGCGATTCTCCCGAGTTTCTGGCAGCCGCTCGAG
CACTTGCACATGAACTACACGCCGCAAACGCGAAACTAGTCTACGGAGGT
GGAACCAAAGGATTGATGGGCGAGGTCGCGAAGACTCTAGTATCACTCTC
TGGCCCATCTGCCGTGCATGGCTTCATACCCCGGGCATTGGTAGCATACT
ATCCCGATGCGGACGTCGGCAAGTCCCAGAATGACGGGAAACAACCAGAG
CGAATCCAAGCTCCAGGGTCTTCGCTGGCTGAGGGCGAATACGGGAGGAT
TACCGTCGTGGACAGCATGCATGAGCGAAAACAAAAAATGGCCGAGCAAG
TTCTCGCCGGTGGCCCTGGGTCAGGATTTGTAGCCCTTCCGGGCGGTTAT
GGGACCCTGGAGGAAGTGGCAGAGAACCAACTTGGGATTCATGATAGAGG
AATTGTGTTGTTGAACGTTAATGGGTTTTGGGATGGTCTTGTCGCGTGGA
TTGCTAAGGCTGCTCAACGGGGATTTATTGGGCCGGCGAATAAAGATATT
ATGGTGGAATGTAAGGAGGTGGGCGAGGTTATTGGGGCGCTTAAAGCCTA
TAACCCAAGTGGCGGGAGGCTGAACCTCTCTTGGGGCTGCAAGTGAATGC
CTAGCGACCGGGACGAAGAGCAGCCCGTCATATGCGTTTTTTGTGGCGCG
CAGCCCGGCGATTCTCCCGAGTTTCTGGCAGCCGCTCGAGCACTTGCACA
TGAACTACACGCCGCAAACGCGAAACTAGTCTACGGAGGTGGAACCAAAG
GATTGATGGGCGAGGTCGCGAAGACTCTAGTATCACTCTCTGGCCCATCT
GCCGTGCATGGCTTCATACCCCGGGCATTGGTAGCATACTATCCCGATGC
GGACGTCGGCAAGTCCCAGAATGACGGGAAACAACCAGAGCGAATCCAAG
CTCCAGGGTCTTCGCTGGCTGAGGGCGAATACGGGAGGATTACCGTCGTG
GACAGCATGCATGAGCGAAAACAAAAAATGGCCGAGCAAGTTCTCGCCGG
TGGCCCTGGGTCAGGATTTGTAGCCCTTCCGGGCGGTTATGGGACCCTGG
AGGAAGTGGCAGAGAACCAACTTGGGATTCATGATAGAGGAATTGTGTTG
TTGAACGTTAATGGGTTTTGGGATGGTCTTGTCGCGTGGATTGCTAAGGC
TGCTCAACGGGGATTTATTGGGCCGGCGAATAAAGATATTATGGTGGAAT
GTAAGGAGGTGGGCGAGGTTATTGGGGCGCTTAAAGCCTATAACCCAAGT
GGCGGGAGGCTGAACCTCTCTTGGGGCTGCAAGTGAATGCCTAGCGACCG
GGACGAAGAGCAGCCCGTCATATGCGTTTT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007488-T1.utr3p1 | KJC3_007488-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007488-T1.utr5p1 | KJC3_007488-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR005269 |
| DBxref | InterPro:IPR031100 |
| DBxref | PFAM:PF03641 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2620257..2621555 - |
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