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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2727612..2729249+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007533-T1 ID=KJC3_007533-T1|Name=KJC3_007533-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1638bp|location=Sequence derived from alignment at ch5:2727612..2729249+ (Aspergillus niger KJC3)
GGGGCTTGGGTATTTCAGCTGTAAATGATCGGAGTTTCTCAGATGATTTT
AACTTTCAAAGAACATTCAATTAGGGGCTCTCAGACGGACAAGTCCGTGG
CAGGGATTATCACGGAGTTTGGCGGACATTAAATCGTACCTCCGATGCCA
TTGAGCCACTTCGCTGATGCTAATAGAATTATGGATTTACCCCTCCCCCC
AAAGAGTGGTGGCGGGATTGATTATCATTAGGTACAACCGTCTGAATTTC
TCTCGTCCTTCTCACCACTTTCTATTCCTCTTCCTTGGCTTCATTTGTGT
ACAGACAAGTTTCCAGGAATAATAATCCACTTTCCTCACCTGTTTTTCTT
TCCCCTCATTACCCACCATGACTGTCACTCTCGTCAATAAAGCCATCGGC
CCGATCGGGTTTGGTCTTATGGGTATGCTCATGCTTCCTCCCACCCCATC
TCTTACAGCAGCCCTTCTAAGCTAACCGACAGGCCTTACCTGGCGTGCCA
ACCCCACCCCATACGACGAGGCCGTCAAAGTCATGAAGCGCGCTCTCGAC
CTCGGGGCTAATTTCTGGAATGCCGGGGAATTCTACGGTCCTCCCCATGC
CAACTCCCTGCAGCTATTGGACTACTACTTCACCAAATATCCCGAAGATA
GCAGCAAAGTAGTCCTCAGTGTCAAGGGCGGTCTGGGCCCCAAAGGTCCC
GACGGCACCACCGAAGGCATCCGCGCCAGTATTGATAACTGCCTGAAGCT
TCTCAACGGCAAAGTGTTTATTAGTATCTTTGAGCCGGCGCGGGTCGATC
CCAACACTCCTATTGAAACCACCATCAGCGCAATAGCCGACTACGTTAAG
GCTGGGAAGATCGGCGGCATCGGCATCAGTGAATGTAGTGAGCAGACAGT
GCGTCGGGCTCATGCCATACATCCTTTGGCTGCTGTGGAGGTTGAGTTGT
CCTTATTTTCCACAGATCCTTTGGAGAACGGAGTTGCTGCTGCCTGTAAG
GAGCTCAATATTCCTCTGGTAGCATACTCCCCTTTGTCCAGAGGATGGTT
GACAGGACAACTACGCTCGTTGGATGATCTGCCTGCCGATGACTCTCGGC
GCAACTATCCTCGATTCCAGCCAGATGTGTTCCACTTGAATTTAAAGTTG
GTGGAGCAGTTGGAGCAGATTGCTAGGAAGAAGAAGGCTACTTTAGCGCA
GACGGCTATTTCCTGGGTAAGGGCTCAGAATAAGCTACCCGGCAATCCCG
TGATTATTCCCATCCCCGGATGCACTACAGTCGAGAGGGTGGAGGAGAAT
ATGGCCGATGTAGAGTTGTCGGAGTCCGAGCTGAAGGAGATTGCTGCTAT
CCTGAAGGAAATCCCGGTCCACGGTGATCGGTATGGGGGAGTGCTCGCGC
GGCTCATGAATCTGTAAAATGCTGAGCCACTTGCCTTGGTTGGCTACATA
TCGCTATAATAATTATATTACTGCGAGGATACGAGGAGCAATCTCCCTGA
GGCTATCATGCAGACAAATTCAATAATGTTAAGGACCCATCCCAGGCGAT
CATTGTATGTAACACTCGCCGTCGCATAACAATATCAGATACGAGGTGGA
GGAAGTAAATGCCAGATTTCCACCAAGTAGCTCTCGAC back to topCoding sequence (CDS) from alignment at ch5:2727612..2729249+ >KJC3_007533-T1 ID=KJC3_007533-T1|Name=KJC3_007533-T1|organism=Aspergillus niger KJC3|type=CDS|length=1980bp|location=Sequence derived from alignment at ch5:2727612..2729249+ (Aspergillus niger KJC3)
ATGACTGTCACTCTCGTCAATAAAGCCATCGGCCCGATCGGGTTTGGTCT
TATGGGCCTTACCTGGCGTGCCAACCCCACCCCATACGACGAGGCCGTCA
AAGTCATGAAGCGCGCTCTCGACCTCGGGGCTAATTTCTGGAATGCCGGG
GAATTCTACGGTCCTCCCCATGCCAACTCCCTGCAGCTATTGGACTACTA
CTTCACCAAATATCCCGAAGATAGCAGCAAAGTAGTCCTCAGTGTCAAGG
GCGGTCTGGGCCCCAAAGGTCCCGACGGCACCACCGAAGGCATCCGCGCC
AGTATTGATAACTGCCTGAAGCTTCTCAACGGCAAAGTGTTTATTAGTAT
CTTTGAGCCGGCGCGGGTCGATCCCAACACTCCTATTGAAACCACCATCA
GCGCAATAGCCGACTACGTTAAGGCTGGGAAGATCGGCGGCATCGGCATC
AGTGAATGTAGTGAGCAGACAGTGCGTCGGGCTCATGCCATACATCCTTT
GGCTGCTGTGGAGGTTGAGTTGTCCTTATTTTCCACAGATCCTTTGGAGA
ACGGAGTTGCTGCTGCCTGTAAGGAGCTCAATATTCCTCTGGTAGCATAC
TCCCCTTTGTCCAGAGGATGGTTGACAGGACAACTACGCTCGTTGGATGA
TCTGCCTGCCGATGACTCTCGGCGCAACTATCCTCGATTCCAGCCAGATG
TGTTCCACTTGAATTTAAAGTTGGTGGAGCAGTTGGAGCAGATTGCTAGG
AAGAAGAAGGCTACTTTAGCGCAGACGGCTATTTCCTGGGTAAGGGCTCA
GAATAAGCTACCCGGCAATCCCGTGATTATTCCCATCCCCGGATGCACTA
CAGTCGAGAGGGTGGAGGAGAATATGGCCGATGTAGAGTTGTCGGAGTCC
GAGCTGAAGGAGATTGCTGCTATCCTGAAGGAAATCCCGGTCCACGGTGA
TCGGTATGGGGGAGTGCTCGCGCGGCTCATGAATCTGTAAATGACTGTCA
CTCTCGTCAATAAAGCCATCGGCCCGATCGGGTTTGGTCTTATGGGCCTT
ACCTGGCGTGCCAACCCCACCCCATACGACGAGGCCGTCAAAGTCATGAA
GCGCGCTCTCGACCTCGGGGCTAATTTCTGGAATGCCGGGGAATTCTACG
GTCCTCCCCATGCCAACTCCCTGCAGCTATTGGACTACTACTTCACCAAA
TATCCCGAAGATAGCAGCAAAGTAGTCCTCAGTGTCAAGGGCGGTCTGGG
CCCCAAAGGTCCCGACGGCACCACCGAAGGCATCCGCGCCAGTATTGATA
ACTGCCTGAAGCTTCTCAACGGCAAAGTGTTTATTAGTATCTTTGAGCCG
GCGCGGGTCGATCCCAACACTCCTATTGAAACCACCATCAGCGCAATAGC
CGACTACGTTAAGGCTGGGAAGATCGGCGGCATCGGCATCAGTGAATGTA
GTGAGCAGACAGTGCGTCGGGCTCATGCCATACATCCTTTGGCTGCTGTG
GAGGTTGAGTTGTCCTTATTTTCCACAGATCCTTTGGAGAACGGAGTTGC
TGCTGCCTGTAAGGAGCTCAATATTCCTCTGGTAGCATACTCCCCTTTGT
CCAGAGGATGGTTGACAGGACAACTACGCTCGTTGGATGATCTGCCTGCC
GATGACTCTCGGCGCAACTATCCTCGATTCCAGCCAGATGTGTTCCACTT
GAATTTAAAGTTGGTGGAGCAGTTGGAGCAGATTGCTAGGAAGAAGAAGG
CTACTTTAGCGCAGACGGCTATTTCCTGGGTAAGGGCTCAGAATAAGCTA
CCCGGCAATCCCGTGATTATTCCCATCCCCGGATGCACTACAGTCGAGAG
GGTGGAGGAGAATATGGCCGATGTAGAGTTGTCGGAGTCCGAGCTGAAGG
AGATTGCTGCTATCCTGAAGGAAATCCCGGTCCACGGTGATCGGTATGGG
GGAGTGCTCGCGCGGCTCATGAATCTGTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007533-T1.utr5p1 | KJC3_007533-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007533-T1.utr3p1 | KJC3_007533-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036812 |
| DBxref | InterPro:IPR023210 |
| DBxref | PFAM:PF00248 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2727612..2729249 + |
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