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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2742830..2744123+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007539-T1 ID=KJC3_007539-T1|Name=KJC3_007539-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1294bp|location=Sequence derived from alignment at ch5:2742830..2744123+ (Aspergillus niger KJC3)
CCGACCCAGATCCATACAGCCTCGCACTACAACAACTTACTACGGGTGAG
ACATCCTCACCCGTCCGTAAGATCGAAAGGATTACTATACACGGAGTAAG
CACTAAGCAACAGCTTAGGCAGCACAACAACTATAAATCTCTCCCACTGC
ACCCACCTCAATGCCAACCACACTCCTATCAATCACAATTCACACCTCAG
ATTAACACTTCCACAAACCAAACACAAACAATGTCTCCCAAAAGCATCCT
CGTCCTCAGCGCCACCGGCAACCAAGGCCGCGGCGTCGTCCAGCACTGCC
TATCGGCCGGTCACTCCGTCTCCGCCTACGTGCGCAATCCAGCCAGCAGC
GCTGCAGTCCAACTCGCAGAACAAGGCGCGACCCTTATCACAGGCGACCT
CGACGACCTGGAATCTCTCCGCACCGCGACCCAAAACGTGGACGCCGTGT
TCTTCACCGAAGTGCAAACCGGCAACCGTGAGCTTGATCTCAAGCGCATG
GACAACGTGATCCTCGCTGCGCAGGAATCGTCTACGATCTCGCATATTAT
TCTCTCTACGGCGCTGAAGACAGGCCAGCATGAGTCATTCCCCGGGTGGG
AGGGCGGTGCGCACCCAATGAAGGAGTACTGGCTCCAAAAGCATGCGCTG
GAGAACCGTGTTCGTGAGGCTGCGGCGGCGAAGAATGGGGGCCGCTGGAC
GATTATCCGACCGGGCCACTTCCTTCAGAATCTCCTGCCGCCGGTGCGGG
ACTTCATGTTCCCTGGCTTCAAGGAAGAGCGGGTCCTGCGCGTGGCGTAT
CGGGCCGGGACGGAGCTGCCGTTGGTGGATGCGCGGGATGTGGGGATTGT
GGTTGCGGCTGCGGTTAAGGAGCCCGAGCGGTTTGCGAACAAGGCTATTG
ATGTCGCGGTGGAGGTGGTCACAGTGGAGCAGTTGGCGGGGAAGATTGGG
AAGGTGGTGGGTGAAGAGGTAAAGGTGGAGTTTTTGGACGATGAGGTCGT
GGATGGGATGATCAAGGAGGGGCATCTTGGTGCTGCTTCGTCGAGATGGG
CCGATGAGGTGCCCGGTGGGGATGGTGTGAGTAACTGTCGCGAGGAGTTG
GGGCCTTTGGCGGAGGGACTTACTTCCGTGGATGCGTTTTTGAAGGAGAA
TGAGAAGGAGATCTTGGCTTGATGCTGATGATGGTGTTGAAAGTGAGATG
AGGTAGTTTGGATGTTGGAGGGCAATATGTATAGAACTGTTTATGTGTGT
TTGCAATGTGTGATTATTTGGGAATTTTATTGATGTCTTGTGCT back to topCoding sequence (CDS) from alignment at ch5:2742830..2744123+ >KJC3_007539-T1 ID=KJC3_007539-T1|Name=KJC3_007539-T1|organism=Aspergillus niger KJC3|type=CDS|length=942bp|location=Sequence derived from alignment at ch5:2742830..2744123+ (Aspergillus niger KJC3)
ATGTCTCCCAAAAGCATCCTCGTCCTCAGCGCCACCGGCAACCAAGGCCG
CGGCGTCGTCCAGCACTGCCTATCGGCCGGTCACTCCGTCTCCGCCTACG
TGCGCAATCCAGCCAGCAGCGCTGCAGTCCAACTCGCAGAACAAGGCGCG
ACCCTTATCACAGGCGACCTCGACGACCTGGAATCTCTCCGCACCGCGAC
CCAAAACGTGGACGCCGTGTTCTTCACCGAAGTGCAAACCGGCAACCGTG
AGCTTGATCTCAAGCGCATGGACAACGTGATCCTCGCTGCGCAGGAATCG
TCTACGATCTCGCATATTATTCTCTCTACGGCGCTGAAGACAGGCCAGCA
TGAGTCATTCCCCGGGTGGGAGGGCGGTGCGCACCCAATGAAGGAGTACT
GGCTCCAAAAGCATGCGCTGGAGAACCGTGTTCGTGAGGCTGCGGCGGCG
AAGAATGGGGGCCGCTGGACGATTATCCGACCGGGCCACTTCCTTCAGAA
TCTCCTGCCGCCGGTGCGGGACTTCATGTTCCCTGGCTTCAAGGAAGAGC
GGGTCCTGCGCGTGGCGTATCGGGCCGGGACGGAGCTGCCGTTGGTGGAT
GCGCGGGATGTGGGGATTGTGGTTGCGGCTGCGGTTAAGGAGCCCGAGCG
GTTTGCGAACAAGGCTATTGATGTCGCGGTGGAGGTGGTCACAGTGGAGC
AGTTGGCGGGGAAGATTGGGAAGGTGGTGGGTGAAGAGGTAAAGGTGGAG
TTTTTGGACGATGAGGTCGTGGATGGGATGATCAAGGAGGGGCATCTTGG
TGCTGCTTCGTCGAGATGGGCCGATGAGGTGCCCGGTGGGGATGGTGTGA
GTAACTGTCGCGAGGAGTTGGGGCCTTTGGCGGAGGGACTTACTTCCGTG
GATGCGTTTTTGAAGGAGAATGAGAAGGAGATCTTGGCTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007539-T1.utr5p1 | KJC3_007539-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007539-T1.utr3p1 | KJC3_007539-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| DBxref | PFAM:PF01370 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2742830..2744123 + |
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