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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2966558..2968910- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007622-T1 ID=KJC3_007622-T1|Name=KJC3_007622-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2353bp|location=Sequence derived from alignment at ch5:2966558..2968910- (Aspergillus niger KJC3)
CTGACGGGCCTGTCTGGACCGAGAATTCTTGGTCAAGTTTCAGTGGAGCG
ATCCAGGAAAGAACATCCGACATGGACAGTTTCCCTCGATCTCAGGTCTG
TAGTCGTGTGACACAGCGGCCTCTACTGGCTTGCCTTGCATGTCGGAGCT
CAAAGGTGCGATGTGAATTAACACGAGGGGCGACTGTCTGTCGCAGATGC
AACACGAGAAATTTGAAGTGTGTCTACACAAAATCACGAAGGTATCCCTC
GTCTATCTTTCCGTGCGTATTATTAGCCGAGAATCACGCAATGCTCTTTG
TATACAATGAAATAATGTTGGAGCTAGAGAATGATTTCTGATAGTTATAT
GTTACAGGACACTCAGGAGGTCGTCAACTAGTCCGAACACGGCGTCCTCT
CCTGACACTAATGCCTCATCTTCGCCATGCTCGGACTCTAGTGGGACCCA
TGCTGGCATTTCCATTCCCCACTCAGATAGTCCCGCCAGTGTGGACGAAT
GTGGGAACAACGGCCTTTTCGACGGGGGTAGGTAATATGTCATGCTTACC
TGCGACACTTACTCACCATTCTTCTAGAATCTCTAACCCAATTATTGGTC
TCTGGGAGCAAAGCCATATCAGGCCAACCACATATCGCCATTAAGCCACA
TGTTCTGTCTACCTATCCCCTTGACAACCTCCTCTCAGACATTGAGGGAC
TCCTCGAGCAGCCAGTCTCTCATTTGGCTCAAAGCAAGGAAGATCTAACA
AAACCGGACCGGATGTTTCGAACTCGCCTTCCAGCGGTCTCAGGTGAGGA
CAATGAGTATCTGCTAAGGAAAGGAGCTCTGCTGCTCTTGCCACCAGCCT
TGCGCAACGAACTATTGGCGGCATATGTCAACTACGTCCATCCGCTATTA
CCGATTCTTGATCTTGGAGACTTTCTCTCACAAGTCATTGTTGGAGATGA
TGCTCAATTCAAGTCACCACTATTATACCAAGCTGTCATGTTCGCGGGCA
GTATTTTTGCTCAGCGAGACGGCACAGACGAACCTGAACAGCTAACGAGG
GCTTTATTTGAACGTACAAAGGTTAGTAATGGTTACAATTAGACATATCT
TAGATATACTGAGCGATTTCCAGGTTCTATACGAGTTTGAATCCGAATCA
TGTGCCTACACTCAAATTCAAGCTCTCTTATTGATGACTCTCTGGCATGG
AGATATGTCACGCCACAAAGGCCCGTCTTACTGGCTTGACGTCGCCTTCT
CCACTGCGGAAAGAATTGGCCTACTCCATGATGAAGACTGGCCATGCGAT
AGCCGTTCCTTCCGATCCGCTATGTGGTGTTGCCTTTACGTACGTGATCG
AACAATCTCGCTTGGGTCTCGTCGGCCTCCACGGATGCCAGTCAACAAAT
ATCCGGACTCAATTCTCCATCTTATGAGCGACGCACCTCGGGAATATGAC
GAAATAATTCTTGAGAGTCTAGGTAGCGCTTCTCTGATGCTTACAAGCAC
TTACCAAGAACAATCGACCATGCTCTTCAAGGAACTTGTCAAACTCTCCT
ACTGCGTCGGGGCAATCTTAGATTATCTATACGAAGGGGCCTGGGTCCGA
ATACCAACACGTCGCAGCAGCTTTTATTCACTCGCCCCTAAATGCAGCAT
CTCGCCATCCATCAGACCAAGCTGTGAGAAACTACTTTACTCTTGGATTC
AATTCCTCCCTCTCAACGCAGTCTACCATCCGCCACAGTTGCCCGCCGAT
GCGGAAGGGGAGTCAGCCGAAACAGTCTTCCTTGTCCACAAAGCCTTCCT
TTACTTGCTGTACCTAGCCTCCATGGCAGTCATATACCGCACAGGCACTC
ATGGCCAACAAACCAGCACGGCAACTCCGAACATGGAAGGTCTACGGGCA
TCGACGTCACAAATAAAAAAGGTCCTTGCGGAGCTGCAGGGCATGGGACT
GCTTCAGTTCCTTCCAGGGGCATCAGTCACTATCCTGATGTTCGCTGTGG
AGGCTAGTCTGTTGGATCTCCAGGGCTCGGATACCATGGTCCGAAGGCAG
GCTATGTCAAATCTATATGCCTGTGAGGAGGCTGCGTTACACTTGATGCA
GGCTTATCCTACGGCTGAGATGGCGGTATTGAAGACTAGGACAGCCCGTG
CAAACCTTCTTGGGTTGGTTGAGACATGAAGACCAATCATGGAAGCTCTG
CTTCCATCGAAGCATTGTGTCTTTGCTTAATGAATGAATGGATTATGAGC
GTTTCGCACCTTCTTTAATGCAGCTACATAATAGAGCATAAACAGAGGCC
CGGAAATATATAATTTGGCTAAGAACCCGGTTGCAAGCAGGCAAGTCACG
AGG back to topCoding sequence (CDS) from alignment at ch5:2966558..2968910- >KJC3_007622-T1 ID=KJC3_007622-T1|Name=KJC3_007622-T1|organism=Aspergillus niger KJC3|type=CDS|length=7560bp|location=Sequence derived from alignment at ch5:2966558..2968910- (Aspergillus niger KJC3)
GTTCTATACGAGTTTGAATCCGAATCATGTGCCTACACTCAAATTCAAGC
TCTCTTATTGATGACTCTCTGGCATGGAGATATGTCACGCCACAAAGGCC
CGTCTTACTGGCTTGACGTCGCCTTCTCCACTGCGGAAAGAATTGGCCTA
CTCCATGATGAAGACTGGCCATGCGATAGCCGTTCCTTCCGATCCGCTAT
GTGGTGTTGCCTTTACGTACGTGATCGAACAATCTCGCTTGGGTCTCGTC
GGCCTCCACGGATGCCAGTCAACAAATATCCGGACTCAATTCTCCATCTT
ATGAGCGACGCACCTCGGGAATATGACGAAATAATTCTTGAGAGTCTAGG
TAGCGCTTCTCTGATGCTTACAAGCACTTACCAAGAACAATCGACCATGC
TCTTCAAGGAACTTGTCAAACTCTCCTACTGCGTCGGGGCAATCTTAGAT
TATCTATACGAAGGGGCCTGGGTCCGAATACCAACACGTCGCAGCAGCTT
TTATTCACTCGCCCCTAAATGCAGCATCTCGCCATCCATCAGACCAAGCT
GTGAGAAACTACTTTACTCTTGGATTCAATTCCTCCCTCTCAACGCAGTC
TACCATCCGCCACAGTTGCCCGCCGATGCGGAAGGGGAGTCAGCCGAAAC
AGTCTTCCTTGTCCACAAAGCCTTCCTTTACTTGCTGTACCTAGCCTCCA
TGGCAGTCATATACCGCACAGGCACTCATGGCCAACAAACCAGCACGGCA
ACTCCGAACATGGAAGGTCTACGGGCATCGACGTCACAAATAAAAAAGGT
CCTTGCGGAGCTGCAGGGCATGGGACTGCTTCAGTTCCTTCCAGGGGCAT
CAGTCACTATCCTGATGTTCGCTGTGGAGGCTAGTCTGTTGGATCTCCAG
GGCTCGGATACCATGGTCCGAAGGCAGGCTATGTCAAATCTATATGCCTG
TGAGGAGGCTGCGTTACACTTGATGCAGGCTTATCCTACGGCTGAGATGG
CGGTATTGAAGACTAGGACAGCCCGTGCAAACCTTCTTGGGTTGGTTGAG
ACATGAAATCTCTAACCCAATTATTGGTCTCTGGGAGCAAAGCCATATCA
GGCCAACCACATATCGCCATTAAGCCACATGTTCTGTCTACCTATCCCCT
TGACAACCTCCTCTCAGACATTGAGGGACTCCTCGAGCAGCCAGTCTCTC
ATTTGGCTCAAAGCAAGGAAGATCTAACAAAACCGGACCGGATGTTTCGA
ACTCGCCTTCCAGCGGTCTCAGGTGAGGACAATGAGTATCTGCTAAGGAA
AGGAGCTCTGCTGCTCTTGCCACCAGCCTTGCGCAACGAACTATTGGCGG
CATATGTCAACTACGTCCATCCGCTATTACCGATTCTTGATCTTGGAGAC
TTTCTCTCACAAGTCATTGTTGGAGATGATGCTCAATTCAAGTCACCACT
ATTATACCAAGCTGTCATGTTCGCGGGCAGTATTTTTGCTCAGCGAGACG
GCACAGACGAACCTGAACAGCTAACGAGGGCTTTATTTGAACGTACAAAG
GACACTCAGGAGGTCGTCAACTAGTCCGAACACGGCGTCCTCTCCTGACA
CTAATGCCTCATCTTCGCCATGCTCGGACTCTAGTGGGACCCATGCTGGC
ATTTCCATTCCCCACTCAGATAGTCCCGCCAGTGTGGACGAATGTGGGAA
CAACGGCCTTTTCGACGGGGATGGACAGTTTCCCTCGATCTCAGGTCTGT
AGTCGTGTGACACAGCGGCCTCTACTGGCTTGCCTTGCATGTCGGAGCTC
AAAGGTGCGATGTGAATTAACACGAGGGGCGACTGTCTGTCGCAGATGCA
ACACGAGAAATTTGAAGTGTGTCTACACAAAATCACGAAGGTTCTATACG
AGTTTGAATCCGAATCATGTGCCTACACTCAAATTCAAGCTCTCTTATTG
ATGACTCTCTGGCATGGAGATATGTCACGCCACAAAGGCCCGTCTTACTG
GCTTGACGTCGCCTTCTCCACTGCGGAAAGAATTGGCCTACTCCATGATG
AAGACTGGCCATGCGATAGCCGTTCCTTCCGATCCGCTATGTGGTGTTGC
CTTTACGTACGTGATCGAACAATCTCGCTTGGGTCTCGTCGGCCTCCACG
GATGCCAGTCAACAAATATCCGGACTCAATTCTCCATCTTATGAGCGACG
CACCTCGGGAATATGACGAAATAATTCTTGAGAGTCTAGGTAGCGCTTCT
CTGATGCTTACAAGCACTTACCAAGAACAATCGACCATGCTCTTCAAGGA
ACTTGTCAAACTCTCCTACTGCGTCGGGGCAATCTTAGATTATCTATACG
AAGGGGCCTGGGTCCGAATACCAACACGTCGCAGCAGCTTTTATTCACTC
GCCCCTAAATGCAGCATCTCGCCATCCATCAGACCAAGCTGTGAGAAACT
ACTTTACTCTTGGATTCAATTCCTCCCTCTCAACGCAGTCTACCATCCGC
CACAGTTGCCCGCCGATGCGGAAGGGGAGTCAGCCGAAACAGTCTTCCTT
GTCCACAAAGCCTTCCTTTACTTGCTGTACCTAGCCTCCATGGCAGTCAT
ATACCGCACAGGCACTCATGGCCAACAAACCAGCACGGCAACTCCGAACA
TGGAAGGTCTACGGGCATCGACGTCACAAATAAAAAAGGTCCTTGCGGAG
CTGCAGGGCATGGGACTGCTTCAGTTCCTTCCAGGGGCATCAGTCACTAT
CCTGATGTTCGCTGTGGAGGCTAGTCTGTTGGATCTCCAGGGCTCGGATA
CCATGGTCCGAAGGCAGGCTATGTCAAATCTATATGCCTGTGAGGAGGCT
GCGTTACACTTGATGCAGGCTTATCCTACGGCTGAGATGGCGGTATTGAA
GACTAGGACAGCCCGTGCAAACCTTCTTGGGTTGGTTGAGACATGAAATC
TCTAACCCAATTATTGGTCTCTGGGAGCAAAGCCATATCAGGCCAACCAC
ATATCGCCATTAAGCCACATGTTCTGTCTACCTATCCCCTTGACAACCTC
CTCTCAGACATTGAGGGACTCCTCGAGCAGCCAGTCTCTCATTTGGCTCA
AAGCAAGGAAGATCTAACAAAACCGGACCGGATGTTTCGAACTCGCCTTC
CAGCGGTCTCAGGTGAGGACAATGAGTATCTGCTAAGGAAAGGAGCTCTG
CTGCTCTTGCCACCAGCCTTGCGCAACGAACTATTGGCGGCATATGTCAA
CTACGTCCATCCGCTATTACCGATTCTTGATCTTGGAGACTTTCTCTCAC
AAGTCATTGTTGGAGATGATGCTCAATTCAAGTCACCACTATTATACCAA
GCTGTCATGTTCGCGGGCAGTATTTTTGCTCAGCGAGACGGCACAGACGA
ACCTGAACAGCTAACGAGGGCTTTATTTGAACGTACAAAGGACACTCAGG
AGGTCGTCAACTAGTCCGAACACGGCGTCCTCTCCTGACACTAATGCCTC
ATCTTCGCCATGCTCGGACTCTAGTGGGACCCATGCTGGCATTTCCATTC
CCCACTCAGATAGTCCCGCCAGTGTGGACGAATGTGGGAACAACGGCCTT
TTCGACGGGGATGGACAGTTTCCCTCGATCTCAGGTCTGTAGTCGTGTGA
CACAGCGGCCTCTACTGGCTTGCCTTGCATGTCGGAGCTCAAAGGTGCGA
TGTGAATTAACACGAGGGGCGACTGTCTGTCGCAGATGCAACACGAGAAA
TTTGAAGTGTGTCTACACAAAATCACGAAGGTTCTATACGAGTTTGAATC
CGAATCATGTGCCTACACTCAAATTCAAGCTCTCTTATTGATGACTCTCT
GGCATGGAGATATGTCACGCCACAAAGGCCCGTCTTACTGGCTTGACGTC
GCCTTCTCCACTGCGGAAAGAATTGGCCTACTCCATGATGAAGACTGGCC
ATGCGATAGCCGTTCCTTCCGATCCGCTATGTGGTGTTGCCTTTACGTAC
GTGATCGAACAATCTCGCTTGGGTCTCGTCGGCCTCCACGGATGCCAGTC
AACAAATATCCGGACTCAATTCTCCATCTTATGAGCGACGCACCTCGGGA
ATATGACGAAATAATTCTTGAGAGTCTAGGTAGCGCTTCTCTGATGCTTA
CAAGCACTTACCAAGAACAATCGACCATGCTCTTCAAGGAACTTGTCAAA
CTCTCCTACTGCGTCGGGGCAATCTTAGATTATCTATACGAAGGGGCCTG
GGTCCGAATACCAACACGTCGCAGCAGCTTTTATTCACTCGCCCCTAAAT
GCAGCATCTCGCCATCCATCAGACCAAGCTGTGAGAAACTACTTTACTCT
TGGATTCAATTCCTCCCTCTCAACGCAGTCTACCATCCGCCACAGTTGCC
CGCCGATGCGGAAGGGGAGTCAGCCGAAACAGTCTTCCTTGTCCACAAAG
CCTTCCTTTACTTGCTGTACCTAGCCTCCATGGCAGTCATATACCGCACA
GGCACTCATGGCCAACAAACCAGCACGGCAACTCCGAACATGGAAGGTCT
ACGGGCATCGACGTCACAAATAAAAAAGGTCCTTGCGGAGCTGCAGGGCA
TGGGACTGCTTCAGTTCCTTCCAGGGGCATCAGTCACTATCCTGATGTTC
GCTGTGGAGGCTAGTCTGTTGGATCTCCAGGGCTCGGATACCATGGTCCG
AAGGCAGGCTATGTCAAATCTATATGCCTGTGAGGAGGCTGCGTTACACT
TGATGCAGGCTTATCCTACGGCTGAGATGGCGGTATTGAAGACTAGGACA
GCCCGTGCAAACCTTCTTGGGTTGGTTGAGACATGAAATCTCTAACCCAA
TTATTGGTCTCTGGGAGCAAAGCCATATCAGGCCAACCACATATCGCCAT
TAAGCCACATGTTCTGTCTACCTATCCCCTTGACAACCTCCTCTCAGACA
TTGAGGGACTCCTCGAGCAGCCAGTCTCTCATTTGGCTCAAAGCAAGGAA
GATCTAACAAAACCGGACCGGATGTTTCGAACTCGCCTTCCAGCGGTCTC
AGGTGAGGACAATGAGTATCTGCTAAGGAAAGGAGCTCTGCTGCTCTTGC
CACCAGCCTTGCGCAACGAACTATTGGCGGCATATGTCAACTACGTCCAT
CCGCTATTACCGATTCTTGATCTTGGAGACTTTCTCTCACAAGTCATTGT
TGGAGATGATGCTCAATTCAAGTCACCACTATTATACCAAGCTGTCATGT
TCGCGGGCAGTATTTTTGCTCAGCGAGACGGCACAGACGAACCTGAACAG
CTAACGAGGGCTTTATTTGAACGTACAAAGGACACTCAGGAGGTCGTCAA
CTAGTCCGAACACGGCGTCCTCTCCTGACACTAATGCCTCATCTTCGCCA
TGCTCGGACTCTAGTGGGACCCATGCTGGCATTTCCATTCCCCACTCAGA
TAGTCCCGCCAGTGTGGACGAATGTGGGAACAACGGCCTTTTCGACGGGG
ATGGACAGTTTCCCTCGATCTCAGGTCTGTAGTCGTGTGACACAGCGGCC
TCTACTGGCTTGCCTTGCATGTCGGAGCTCAAAGGTGCGATGTGAATTAA
CACGAGGGGCGACTGTCTGTCGCAGATGCAACACGAGAAATTTGAAGTGT
GTCTACACAAAATCACGAAGGTTCTATACGAGTTTGAATCCGAATCATGT
GCCTACACTCAAATTCAAGCTCTCTTATTGATGACTCTCTGGCATGGAGA
TATGTCACGCCACAAAGGCCCGTCTTACTGGCTTGACGTCGCCTTCTCCA
CTGCGGAAAGAATTGGCCTACTCCATGATGAAGACTGGCCATGCGATAGC
CGTTCCTTCCGATCCGCTATGTGGTGTTGCCTTTACGTACGTGATCGAAC
AATCTCGCTTGGGTCTCGTCGGCCTCCACGGATGCCAGTCAACAAATATC
CGGACTCAATTCTCCATCTTATGAGCGACGCACCTCGGGAATATGACGAA
ATAATTCTTGAGAGTCTAGGTAGCGCTTCTCTGATGCTTACAAGCACTTA
CCAAGAACAATCGACCATGCTCTTCAAGGAACTTGTCAAACTCTCCTACT
GCGTCGGGGCAATCTTAGATTATCTATACGAAGGGGCCTGGGTCCGAATA
CCAACACGTCGCAGCAGCTTTTATTCACTCGCCCCTAAATGCAGCATCTC
GCCATCCATCAGACCAAGCTGTGAGAAACTACTTTACTCTTGGATTCAAT
TCCTCCCTCTCAACGCAGTCTACCATCCGCCACAGTTGCCCGCCGATGCG
GAAGGGGAGTCAGCCGAAACAGTCTTCCTTGTCCACAAAGCCTTCCTTTA
CTTGCTGTACCTAGCCTCCATGGCAGTCATATACCGCACAGGCACTCATG
GCCAACAAACCAGCACGGCAACTCCGAACATGGAAGGTCTACGGGCATCG
ACGTCACAAATAAAAAAGGTCCTTGCGGAGCTGCAGGGCATGGGACTGCT
TCAGTTCCTTCCAGGGGCATCAGTCACTATCCTGATGTTCGCTGTGGAGG
CTAGTCTGTTGGATCTCCAGGGCTCGGATACCATGGTCCGAAGGCAGGCT
ATGTCAAATCTATATGCCTGTGAGGAGGCTGCGTTACACTTGATGCAGGC
TTATCCTACGGCTGAGATGGCGGTATTGAAGACTAGGACAGCCCGTGCAA
ACCTTCTTGGGTTGGTTGAGACATGAAATCTCTAACCCAATTATTGGTCT
CTGGGAGCAAAGCCATATCAGGCCAACCACATATCGCCATTAAGCCACAT
GTTCTGTCTACCTATCCCCTTGACAACCTCCTCTCAGACATTGAGGGACT
CCTCGAGCAGCCAGTCTCTCATTTGGCTCAAAGCAAGGAAGATCTAACAA
AACCGGACCGGATGTTTCGAACTCGCCTTCCAGCGGTCTCAGGTGAGGAC
AATGAGTATCTGCTAAGGAAAGGAGCTCTGCTGCTCTTGCCACCAGCCTT
GCGCAACGAACTATTGGCGGCATATGTCAACTACGTCCATCCGCTATTAC
CGATTCTTGATCTTGGAGACTTTCTCTCACAAGTCATTGTTGGAGATGAT
GCTCAATTCAAGTCACCACTATTATACCAAGCTGTCATGTTCGCGGGCAG
TATTTTTGCTCAGCGAGACGGCACAGACGAACCTGAACAGCTAACGAGGG
CTTTATTTGAACGTACAAAGGACACTCAGGAGGTCGTCAACTAGTCCGAA
CACGGCGTCCTCTCCTGACACTAATGCCTCATCTTCGCCATGCTCGGACT
CTAGTGGGACCCATGCTGGCATTTCCATTCCCCACTCAGATAGTCCCGCC
AGTGTGGACGAATGTGGGAACAACGGCCTTTTCGACGGGGATGGACAGTT
TCCCTCGATCTCAGGTCTGTAGTCGTGTGACACAGCGGCCTCTACTGGCT
TGCCTTGCATGTCGGAGCTCAAAGGTGCGATGTGAATTAACACGAGGGGC
GACTGTCTGTCGCAGATGCAACACGAGAAATTTGAAGTGTGTCTACACAA
AATCACGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007622-T1.utr3p1 | KJC3_007622-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007622-T1.utr5p1 | KJC3_007622-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2966558..2968910 - |
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