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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2973690..2975137- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007625-T1 ID=KJC3_007625-T1|Name=KJC3_007625-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1448bp|location=Sequence derived from alignment at ch5:2973690..2975137- (Aspergillus niger KJC3)
CCCGAATCCGAAATTGAACCTGCACCGCACCTCTAACCGAGTCAAACTAG
CCATGCCCCCACGACTCAACCACCGCAAATCCACCCGCGGATGTCGGCGG
TGCAAAGCTAGGAAAGTCAAGGTAATCAATTTCCCCCTTTACTACCCCAC
CGAAAGGATCCATTTCCCATATCCGGTATCTAACCGAAGTGTTAAGCTAA
TGTGGACCTCTCAAACGAAAAAAACAGTGCAGCGAAACCCGCCCTAAATG
CCAGCACTGCGATCGTCACAACCTCCCCTGTGAATATGCGCCTCTCGAAC
CGCGCATGTACACATACCGAGATGATTCCAGCAATAGAAGCACAAGCACT
GCCAGCACCACCACAGCCCTCCTGTCCTCACCAACATCCACGTCCACATC
TCTATCCATCCCCAGCACGTCACTATACACTAACAACCTCCAACCCCCCC
ACCTGACTCCCCTAAACACCACCTCCCTCCGCCTCCTTCACCTGTACATC
ACCTCCACCTCGCACACAATGGGCACAGCGCAGATCCCTTCCGTGCGTGA
AATGTGGGCACTCTCCGTCCCCGAAATGGCCTTTGAGTATCAGCCCCTCC
TGTCCACCCTGCTCGCTGTGGCTGCGGCGCATCGCGCACGGCTTGTCCCC
CCTGAAGCGGAGGAGCTGAGGCGTGTACAAGGAGGGTTAATTGCTCAGGC
GGTTGGGGAACATAGGACTGAGACAGCCAAGTTGGCGGTGTCCTCGTCGT
TGGGGGCGGGGGGTAGAGCTGGTGGGGTGACGGAGACGTTGTGTATGAAT
GCTATTTTAATCTCGCTGTATACGCTTGCGTGCAGGATGGATGGAGGTGG
GGTGGGTGAGTACGAGCCTCCGAATCTGTGGTTGAATATGGCGAGGGGAG
TGCGGACCGTTGTGTCGATGGTATACTTTAGGCTTGTGGAGGAGAGGGCC
CGGATTGCGCCGTTGTTGGTTGCCAAGCCGGTTGTGCATCGGAAGGATGT
GGAGGTGCAGGATGGGGGGCCGAAGGGGAGTAGTGGTGTAGAAGGGGCGT
TGAGGTTCTTGGTAGATATGTTTCCCGGTAGTGAGGAGGGTGGAGAGGAG
GTGATGGGGATTTATGCGCAGTGTGTTGGGTACCTGGAGGGGTTGTTGAT
GGCGGTTAGAATGGGGGAGTCGGAGTATGATATTCGGAAGAGGTTCTCGT
CGTTTCCGAGTATGGTTCCGGGGGAGTTCTTGGGATTGGTGAGTGAACGG
AGACCGAGGGCCTTGGTAATTCTGGCGTATCTGTTTGCGTTGGTTAAGTG
TGCGGAGGGGGTGTGGTGGTTGAGGGGCATTCCGGAGATGGAGGTCCGTG
GGATTGATTCTATCTTGCCTGAGGAGTGGAGGGAGGTTATGGGGTGGCCG
GTGGGGGTGGTTATGGGAGTGGTAGATGTTAATGAATCGGTGTTATGA back to topCoding sequence (CDS) from alignment at ch5:2973690..2975137- >KJC3_007625-T1 ID=KJC3_007625-T1|Name=KJC3_007625-T1|organism=Aspergillus niger KJC3|type=CDS|length=2580bp|location=Sequence derived from alignment at ch5:2973690..2975137- (Aspergillus niger KJC3)
TGCAGCGAAACCCGCCCTAAATGCCAGCACTGCGATCGTCACAACCTCCC
CTGTGAATATGCGCCTCTCGAACCGCGCATGTACACATACCGAGATGATT
CCAGCAATAGAAGCACAAGCACTGCCAGCACCACCACAGCCCTCCTGTCC
TCACCAACATCCACGTCCACATCTCTATCCATCCCCAGCACGTCACTATA
CACTAACAACCTCCAACCCCCCCACCTGACTCCCCTAAACACCACCTCCC
TCCGCCTCCTTCACCTGTACATCACCTCCACCTCGCACACAATGGGCACA
GCGCAGATCCCTTCCGTGCGTGAAATGTGGGCACTCTCCGTCCCCGAAAT
GGCCTTTGAGTATCAGCCCCTCCTGTCCACCCTGCTCGCTGTGGCTGCGG
CGCATCGCGCACGGCTTGTCCCCCCTGAAGCGGAGGAGCTGAGGCGTGTA
CAAGGAGGGTTAATTGCTCAGGCGGTTGGGGAACATAGGACTGAGACAGC
CAAGTTGGCGGTGTCCTCGTCGTTGGGGGCGGGGGGTAGAGCTGGTGGGG
TGACGGAGACGTTGTGTATGAATGCTATTTTAATCTCGCTGTATACGCTT
GCGTGCAGGATGGATGGAGGTGGGGTGGGTGAGTACGAGCCTCCGAATCT
GTGGTTGAATATGGCGAGGGGAGTGCGGACCGTTGTGTCGATGGTATACT
TTAGGCTTGTGGAGGAGAGGGCCCGGATTGCGCCGTTGTTGGTTGCCAAG
CCGGTTGTGCATCGGAAGGATGTGGAGGTGCAGGATGGGGGGCCGAAGGG
GAGTAGTGGTGTAGAAGGGGCGTTGAGGTTCTTGGTAGATATGTTTCCCG
GTAGTGAGGAGGGTGGAGAGGAGGTGATGGGGATTTATGCGCAGTGTGTT
GGGTACCTGGAGGGGTTGTTGATGGCGGTTAGAATGGGGGAGTCGGAGTA
TGATATTCGGAAGAGGTTCTCGTCGTTTCCGAGTATGGTTCCGGGGGAGT
TCTTGGGATTGGTGAGTGAACGGAGACCGAGGGCCTTGGTAATTCTGGCG
TATCTGTTTGCGTTGGTTAAGTGTGCGGAGGGGGTGTGGTGGTTGAGGGG
CATTCCGGAGATGGAGGTCCGTGGGATTGATTCTATCTTGCCTGAGGAGT
GGAGGGAGGTTATGGGGTGGCCGGTGGGGGTGGTTATGGGAGTGGTAGAT
GTTAATGAATCGGTGTTATGAATGCCCCCACGACTCAACCACCGCAAATC
CACCCGCGGATGTCGGCGGTGCAAAGCTAGGAAAGTCAAGTGCAGCGAAA
CCCGCCCTAAATGCCAGCACTGCGATCGTCACAACCTCCCCTGTGAATAT
GCGCCTCTCGAACCGCGCATGTACACATACCGAGATGATTCCAGCAATAG
AAGCACAAGCACTGCCAGCACCACCACAGCCCTCCTGTCCTCACCAACAT
CCACGTCCACATCTCTATCCATCCCCAGCACGTCACTATACACTAACAAC
CTCCAACCCCCCCACCTGACTCCCCTAAACACCACCTCCCTCCGCCTCCT
TCACCTGTACATCACCTCCACCTCGCACACAATGGGCACAGCGCAGATCC
CTTCCGTGCGTGAAATGTGGGCACTCTCCGTCCCCGAAATGGCCTTTGAG
TATCAGCCCCTCCTGTCCACCCTGCTCGCTGTGGCTGCGGCGCATCGCGC
ACGGCTTGTCCCCCCTGAAGCGGAGGAGCTGAGGCGTGTACAAGGAGGGT
TAATTGCTCAGGCGGTTGGGGAACATAGGACTGAGACAGCCAAGTTGGCG
GTGTCCTCGTCGTTGGGGGCGGGGGGTAGAGCTGGTGGGGTGACGGAGAC
GTTGTGTATGAATGCTATTTTAATCTCGCTGTATACGCTTGCGTGCAGGA
TGGATGGAGGTGGGGTGGGTGAGTACGAGCCTCCGAATCTGTGGTTGAAT
ATGGCGAGGGGAGTGCGGACCGTTGTGTCGATGGTATACTTTAGGCTTGT
GGAGGAGAGGGCCCGGATTGCGCCGTTGTTGGTTGCCAAGCCGGTTGTGC
ATCGGAAGGATGTGGAGGTGCAGGATGGGGGGCCGAAGGGGAGTAGTGGT
GTAGAAGGGGCGTTGAGGTTCTTGGTAGATATGTTTCCCGGTAGTGAGGA
GGGTGGAGAGGAGGTGATGGGGATTTATGCGCAGTGTGTTGGGTACCTGG
AGGGGTTGTTGATGGCGGTTAGAATGGGGGAGTCGGAGTATGATATTCGG
AAGAGGTTCTCGTCGTTTCCGAGTATGGTTCCGGGGGAGTTCTTGGGATT
GGTGAGTGAACGGAGACCGAGGGCCTTGGTAATTCTGGCGTATCTGTTTG
CGTTGGTTAAGTGTGCGGAGGGGGTGTGGTGGTTGAGGGGCATTCCGGAG
ATGGAGGTCCGTGGGATTGATTCTATCTTGCCTGAGGAGTGGAGGGAGGT
TATGGGGTGGCCGGTGGGGGTGGTTATGGGAGTGGTAGATGTTAATGAAT
CGGTGTTATGAATGCCCCCACGACTCAACCACCGCAAATCCACCCGCGGA
TGTCGGCGGTGCAAAGCTAGGAAAGTCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007625-T1.utr5p1 | KJC3_007625-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2973690..2975137 - |
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