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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:3032181..3034428- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007649-T1 ID=KJC3_007649-T1|Name=KJC3_007649-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2248bp|location=Sequence derived from alignment at ch5:3032181..3034428- (Aspergillus niger KJC3)
CTGGAATCAAATCACGACGTCCGCTCTCGCAAGCACTGCCTATTCCTGTT
GCATGCAAATCACAGCCTCTTCTATTCTCCGAGCTGACCTGCATCTGTCC
TTGCCTGCATCTGGTAGCTTCGTCTCCGCCGCTTATACACATGGTGTTCC
CTGGAAGGCTTAGCACCGGCTGCTATGTATGCCGGAGGCGTAAAGTTAAG
GTATGTTCGGCAACCAAGACAAACACTGTCCTGTTTGTTCATCTATGTGA
TTCTTAACTGACCTGGGACAGTGTGATGGGGCTCGACCGGCATGCCGTCG
CTGTGTCACACAGGGAAGGCAGTGCACGGGTTATCCAGATGCCTTCGCCT
TTCGTGAATACAAAGCCACGAAAGGACCTCAAACAGACAAGGCAGTAGCC
AGGAAACGAGGCAAAAAGACGGCAGACGGTGAACAGCCCTCGAGTGGTTC
AGCATCACCGTCTGCGGCAGTATCAGACCAGGATGGAACTGACACACGTC
TGATTGCCATTAAATCCCCATCTACACCACCTAGCCCCCCTGCTGCGATA
ACTCCATGTCTGGAGTGGCAGTCGCTTTGTTATTTCTTTCACCAGCATGT
CCTGCCCACAGAAAAGTCTCCGTGTGAAGGTCATCTTGCGTTTCTTCCTG
AGCTATATCAAGAGAAAGGCAACGACCCTTCCCTGAGACATGCCATTCTT
AGCGTATCCTACCTCTCGTTATTCAACACCGCTCGCGTGAATGAGCTTTA
TGTGAATGCTAGGAAGCACTATGGCGTGGCCTTGAAATCTCTCACAGCGT
CACTCAGCAACAAGGAGACCTCGACTCAAGACGAGACGTTTGCAGCTGCA
CTTTTCCTTAGTATGTTCATGGTAAGTCTACCAACCTCGTCCGGAATAAC
CGGATACGCTTGCTTACCAATCATCAGGACCTAAGCGGCGAGAGACAGGG
GGCAGTAAATCCTCACATCCCTGGAATCTGCTCCCTAATGCATCTTCGGG
GCAGGCCGCAGCGCAGTAGCAAATATGCCCGCAAGCTGTTCGGTTGGGCA
TTCACTCAAATAGTAAGTCGACCCACTGTAATCACAGTACCTATTGTTGA
CCGAGACCCCGCGTTGCAGCAAATACAAGCGGTAGCCAATAATCAATTCG
CGTATGCCTGCTTGCCAGCGTCTATCAATATGGCGTACAATCCCGACTAC
GTGCTACGCTCGGGCATTATCACCAGTATGATCTCCGGGTTCTGTCAGGG
GGCCAGCGAGTTCCGAAGAACCGAACACAACTATCCACTCACCGCCAGGG
CCCGGTTACTGCATTCCCTGCTAGGACGGGCGTACTTCATTATGGAGCAA
ATCAGCATCTGGGACGAAGCAGTCCCTCAACATTGGAAACGACAATTCGC
CACGCCGGCTATGGGCCATTTGAATCATACAGAGCAGGCTGCTTCACGAG
ATCCATGGACGCCCTGCTTTTTGGCCGTTGTTCAGGCCGCCCAAATCCTC
TATTTCATCCACGTGTTCGAGTGCTGGGAGAAGTTCGTTCCACTCGCATC
TGCGATAAAGGATGAGCATATTGAGAATTTCCCAGTAGAAACATTCAGCG
GGATAGACGATCGGATCAGAGGCCTGATAGACGTGATTTGCAACACTGTG
ACTTGCACGTTAGGACATATCACCCCGAAGCATGAATTCCAGCTGCACCC
CAACAGCAAGCTGGCGAATGGATACACGCTTCTGTGGCCGATGTGGGTGG
TTGTAAATTCTGGACTTGCGACACCAGATCAATTGGACCTCTGCCGGCTT
GCTCTCGAGTGTGTTGGTTCCACCATGGGTTACCGGCTGGCCTCTGTCCT
GTGCGCGGATGGTAGACCGGAAGAACCTCGTTCGAGCATACTTGAGCAAT
CCCCATTGACTCGCAGCCTCACCGTTGTACAATAAGCTGCACTTTATGAA
CATTTCATGCCGTGTTATGAGACGCGATGACCATTGTGACTTTATACCCT
CCAGGCGAAAGCAGTTCCAGTGACTGTATGCCTCACCTTATTTCCATGTC
GCATTTCCTGTCAATGCTGAATACTTTCTGACGAATTAATATTTCTGTGA
CCTCTTTATTGATGAAAATGGCCATTTTCTTACCTGTATCTATTCCACTC
GAACGACTTGTATCCGCGCTGGGTAACCCATCCCTATTTAGAGAGCAGGG
AGCAAAGCAACTTAAATACTTCTCAGGGGGTATTCTCCAGGACGCGGA back to topCoding sequence (CDS) from alignment at ch5:3032181..3034428- >KJC3_007649-T1 ID=KJC3_007649-T1|Name=KJC3_007649-T1|organism=Aspergillus niger KJC3|type=CDS|length=6444bp|location=Sequence derived from alignment at ch5:3032181..3034428- (Aspergillus niger KJC3)
CAAATACAAGCGGTAGCCAATAATCAATTCGCGTATGCCTGCTTGCCAGC
GTCTATCAATATGGCGTACAATCCCGACTACGTGCTACGCTCGGGCATTA
TCACCAGTATGATCTCCGGGTTCTGTCAGGGGGCCAGCGAGTTCCGAAGA
ACCGAACACAACTATCCACTCACCGCCAGGGCCCGGTTACTGCATTCCCT
GCTAGGACGGGCGTACTTCATTATGGAGCAAATCAGCATCTGGGACGAAG
CAGTCCCTCAACATTGGAAACGACAATTCGCCACGCCGGCTATGGGCCAT
TTGAATCATACAGAGCAGGCTGCTTCACGAGATCCATGGACGCCCTGCTT
TTTGGCCGTTGTTCAGGCCGCCCAAATCCTCTATTTCATCCACGTGTTCG
AGTGCTGGGAGAAGTTCGTTCCACTCGCATCTGCGATAAAGGATGAGCAT
ATTGAGAATTTCCCAGTAGAAACATTCAGCGGGATAGACGATCGGATCAG
AGGCCTGATAGACGTGATTTGCAACACTGTGACTTGCACGTTAGGACATA
TCACCCCGAAGCATGAATTCCAGCTGCACCCCAACAGCAAGCTGGCGAAT
GGATACACGCTTCTGTGGCCGATGTGGGTGGTTGTAAATTCTGGACTTGC
GACACCAGATCAATTGGACCTCTGCCGGCTTGCTCTCGAGTGTGTTGGTT
CCACCATGGGTTACCGGCTGGCCTCTGTCCTGTGCGCGGATGGTAGACCG
GAAGAACCTCGTTCGAGCATACTTGAGCAATCCCCATTGACTCGCAGCCT
CACCGTTGTACAATAAGACCTAAGCGGCGAGAGACAGGGGGCAGTAAATC
CTCACATCCCTGGAATCTGCTCCCTAATGCATCTTCGGGGCAGGCCGCAG
CGCAGTAGCAAATATGCCCGCAAGCTGTTCGGTTGGGCATTCACTCAAAT
ATGTGATGGGGCTCGACCGGCATGCCGTCGCTGTGTCACACAGGGAAGGC
AGTGCACGGGTTATCCAGATGCCTTCGCCTTTCGTGAATACAAAGCCACG
AAAGGACCTCAAACAGACAAGGCAGTAGCCAGGAAACGAGGCAAAAAGAC
GGCAGACGGTGAACAGCCCTCGAGTGGTTCAGCATCACCGTCTGCGGCAG
TATCAGACCAGGATGGAACTGACACACGTCTGATTGCCATTAAATCCCCA
TCTACACCACCTAGCCCCCCTGCTGCGATAACTCCATGTCTGGAGTGGCA
GTCGCTTTGTTATTTCTTTCACCAGCATGTCCTGCCCACAGAAAAGTCTC
CGTGTGAAGGTCATCTTGCGTTTCTTCCTGAGCTATATCAAGAGAAAGGC
AACGACCCTTCCCTGAGACATGCCATTCTTAGCGTATCCTACCTCTCGTT
ATTCAACACCGCTCGCGTGAATGAGCTTTATGTGAATGCTAGGAAGCACT
ATGGCGTGGCCTTGAAATCTCTCACAGCGTCACTCAGCAACAAGGAGACC
TCGACTCAAGACGAGACGTTTGCAGCTGCACTTTTCCTTAGTATGTTCAT
GATGGTGTTCCCTGGAAGGCTTAGCACCGGCTGCTATGTATGCCGGAGGC
GTAAAGTTAAGCAAATACAAGCGGTAGCCAATAATCAATTCGCGTATGCC
TGCTTGCCAGCGTCTATCAATATGGCGTACAATCCCGACTACGTGCTACG
CTCGGGCATTATCACCAGTATGATCTCCGGGTTCTGTCAGGGGGCCAGCG
AGTTCCGAAGAACCGAACACAACTATCCACTCACCGCCAGGGCCCGGTTA
CTGCATTCCCTGCTAGGACGGGCGTACTTCATTATGGAGCAAATCAGCAT
CTGGGACGAAGCAGTCCCTCAACATTGGAAACGACAATTCGCCACGCCGG
CTATGGGCCATTTGAATCATACAGAGCAGGCTGCTTCACGAGATCCATGG
ACGCCCTGCTTTTTGGCCGTTGTTCAGGCCGCCCAAATCCTCTATTTCAT
CCACGTGTTCGAGTGCTGGGAGAAGTTCGTTCCACTCGCATCTGCGATAA
AGGATGAGCATATTGAGAATTTCCCAGTAGAAACATTCAGCGGGATAGAC
GATCGGATCAGAGGCCTGATAGACGTGATTTGCAACACTGTGACTTGCAC
GTTAGGACATATCACCCCGAAGCATGAATTCCAGCTGCACCCCAACAGCA
AGCTGGCGAATGGATACACGCTTCTGTGGCCGATGTGGGTGGTTGTAAAT
TCTGGACTTGCGACACCAGATCAATTGGACCTCTGCCGGCTTGCTCTCGA
GTGTGTTGGTTCCACCATGGGTTACCGGCTGGCCTCTGTCCTGTGCGCGG
ATGGTAGACCGGAAGAACCTCGTTCGAGCATACTTGAGCAATCCCCATTG
ACTCGCAGCCTCACCGTTGTACAATAAGACCTAAGCGGCGAGAGACAGGG
GGCAGTAAATCCTCACATCCCTGGAATCTGCTCCCTAATGCATCTTCGGG
GCAGGCCGCAGCGCAGTAGCAAATATGCCCGCAAGCTGTTCGGTTGGGCA
TTCACTCAAATATGTGATGGGGCTCGACCGGCATGCCGTCGCTGTGTCAC
ACAGGGAAGGCAGTGCACGGGTTATCCAGATGCCTTCGCCTTTCGTGAAT
ACAAAGCCACGAAAGGACCTCAAACAGACAAGGCAGTAGCCAGGAAACGA
GGCAAAAAGACGGCAGACGGTGAACAGCCCTCGAGTGGTTCAGCATCACC
GTCTGCGGCAGTATCAGACCAGGATGGAACTGACACACGTCTGATTGCCA
TTAAATCCCCATCTACACCACCTAGCCCCCCTGCTGCGATAACTCCATGT
CTGGAGTGGCAGTCGCTTTGTTATTTCTTTCACCAGCATGTCCTGCCCAC
AGAAAAGTCTCCGTGTGAAGGTCATCTTGCGTTTCTTCCTGAGCTATATC
AAGAGAAAGGCAACGACCCTTCCCTGAGACATGCCATTCTTAGCGTATCC
TACCTCTCGTTATTCAACACCGCTCGCGTGAATGAGCTTTATGTGAATGC
TAGGAAGCACTATGGCGTGGCCTTGAAATCTCTCACAGCGTCACTCAGCA
ACAAGGAGACCTCGACTCAAGACGAGACGTTTGCAGCTGCACTTTTCCTT
AGTATGTTCATGATGGTGTTCCCTGGAAGGCTTAGCACCGGCTGCTATGT
ATGCCGGAGGCGTAAAGTTAAGCAAATACAAGCGGTAGCCAATAATCAAT
TCGCGTATGCCTGCTTGCCAGCGTCTATCAATATGGCGTACAATCCCGAC
TACGTGCTACGCTCGGGCATTATCACCAGTATGATCTCCGGGTTCTGTCA
GGGGGCCAGCGAGTTCCGAAGAACCGAACACAACTATCCACTCACCGCCA
GGGCCCGGTTACTGCATTCCCTGCTAGGACGGGCGTACTTCATTATGGAG
CAAATCAGCATCTGGGACGAAGCAGTCCCTCAACATTGGAAACGACAATT
CGCCACGCCGGCTATGGGCCATTTGAATCATACAGAGCAGGCTGCTTCAC
GAGATCCATGGACGCCCTGCTTTTTGGCCGTTGTTCAGGCCGCCCAAATC
CTCTATTTCATCCACGTGTTCGAGTGCTGGGAGAAGTTCGTTCCACTCGC
ATCTGCGATAAAGGATGAGCATATTGAGAATTTCCCAGTAGAAACATTCA
GCGGGATAGACGATCGGATCAGAGGCCTGATAGACGTGATTTGCAACACT
GTGACTTGCACGTTAGGACATATCACCCCGAAGCATGAATTCCAGCTGCA
CCCCAACAGCAAGCTGGCGAATGGATACACGCTTCTGTGGCCGATGTGGG
TGGTTGTAAATTCTGGACTTGCGACACCAGATCAATTGGACCTCTGCCGG
CTTGCTCTCGAGTGTGTTGGTTCCACCATGGGTTACCGGCTGGCCTCTGT
CCTGTGCGCGGATGGTAGACCGGAAGAACCTCGTTCGAGCATACTTGAGC
AATCCCCATTGACTCGCAGCCTCACCGTTGTACAATAAGACCTAAGCGGC
GAGAGACAGGGGGCAGTAAATCCTCACATCCCTGGAATCTGCTCCCTAAT
GCATCTTCGGGGCAGGCCGCAGCGCAGTAGCAAATATGCCCGCAAGCTGT
TCGGTTGGGCATTCACTCAAATATGTGATGGGGCTCGACCGGCATGCCGT
CGCTGTGTCACACAGGGAAGGCAGTGCACGGGTTATCCAGATGCCTTCGC
CTTTCGTGAATACAAAGCCACGAAAGGACCTCAAACAGACAAGGCAGTAG
CCAGGAAACGAGGCAAAAAGACGGCAGACGGTGAACAGCCCTCGAGTGGT
TCAGCATCACCGTCTGCGGCAGTATCAGACCAGGATGGAACTGACACACG
TCTGATTGCCATTAAATCCCCATCTACACCACCTAGCCCCCCTGCTGCGA
TAACTCCATGTCTGGAGTGGCAGTCGCTTTGTTATTTCTTTCACCAGCAT
GTCCTGCCCACAGAAAAGTCTCCGTGTGAAGGTCATCTTGCGTTTCTTCC
TGAGCTATATCAAGAGAAAGGCAACGACCCTTCCCTGAGACATGCCATTC
TTAGCGTATCCTACCTCTCGTTATTCAACACCGCTCGCGTGAATGAGCTT
TATGTGAATGCTAGGAAGCACTATGGCGTGGCCTTGAAATCTCTCACAGC
GTCACTCAGCAACAAGGAGACCTCGACTCAAGACGAGACGTTTGCAGCTG
CACTTTTCCTTAGTATGTTCATGATGGTGTTCCCTGGAAGGCTTAGCACC
GGCTGCTATGTATGCCGGAGGCGTAAAGTTAAGCAAATACAAGCGGTAGC
CAATAATCAATTCGCGTATGCCTGCTTGCCAGCGTCTATCAATATGGCGT
ACAATCCCGACTACGTGCTACGCTCGGGCATTATCACCAGTATGATCTCC
GGGTTCTGTCAGGGGGCCAGCGAGTTCCGAAGAACCGAACACAACTATCC
ACTCACCGCCAGGGCCCGGTTACTGCATTCCCTGCTAGGACGGGCGTACT
TCATTATGGAGCAAATCAGCATCTGGGACGAAGCAGTCCCTCAACATTGG
AAACGACAATTCGCCACGCCGGCTATGGGCCATTTGAATCATACAGAGCA
GGCTGCTTCACGAGATCCATGGACGCCCTGCTTTTTGGCCGTTGTTCAGG
CCGCCCAAATCCTCTATTTCATCCACGTGTTCGAGTGCTGGGAGAAGTTC
GTTCCACTCGCATCTGCGATAAAGGATGAGCATATTGAGAATTTCCCAGT
AGAAACATTCAGCGGGATAGACGATCGGATCAGAGGCCTGATAGACGTGA
TTTGCAACACTGTGACTTGCACGTTAGGACATATCACCCCGAAGCATGAA
TTCCAGCTGCACCCCAACAGCAAGCTGGCGAATGGATACACGCTTCTGTG
GCCGATGTGGGTGGTTGTAAATTCTGGACTTGCGACACCAGATCAATTGG
ACCTCTGCCGGCTTGCTCTCGAGTGTGTTGGTTCCACCATGGGTTACCGG
CTGGCCTCTGTCCTGTGCGCGGATGGTAGACCGGAAGAACCTCGTTCGAG
CATACTTGAGCAATCCCCATTGACTCGCAGCCTCACCGTTGTACAATAAG
ACCTAAGCGGCGAGAGACAGGGGGCAGTAAATCCTCACATCCCTGGAATC
TGCTCCCTAATGCATCTTCGGGGCAGGCCGCAGCGCAGTAGCAAATATGC
CCGCAAGCTGTTCGGTTGGGCATTCACTCAAATATGTGATGGGGCTCGAC
CGGCATGCCGTCGCTGTGTCACACAGGGAAGGCAGTGCACGGGTTATCCA
GATGCCTTCGCCTTTCGTGAATACAAAGCCACGAAAGGACCTCAAACAGA
CAAGGCAGTAGCCAGGAAACGAGGCAAAAAGACGGCAGACGGTGAACAGC
CCTCGAGTGGTTCAGCATCACCGTCTGCGGCAGTATCAGACCAGGATGGA
ACTGACACACGTCTGATTGCCATTAAATCCCCATCTACACCACCTAGCCC
CCCTGCTGCGATAACTCCATGTCTGGAGTGGCAGTCGCTTTGTTATTTCT
TTCACCAGCATGTCCTGCCCACAGAAAAGTCTCCGTGTGAAGGTCATCTT
GCGTTTCTTCCTGAGCTATATCAAGAGAAAGGCAACGACCCTTCCCTGAG
ACATGCCATTCTTAGCGTATCCTACCTCTCGTTATTCAACACCGCTCGCG
TGAATGAGCTTTATGTGAATGCTAGGAAGCACTATGGCGTGGCCTTGAAA
TCTCTCACAGCGTCACTCAGCAACAAGGAGACCTCGACTCAAGACGAGAC
GTTTGCAGCTGCACTTTTCCTTAGTATGTTCATGATGGTGTTCCCTGGAA
GGCTTAGCACCGGCTGCTATGTATGCCGGAGGCGTAAAGTTAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007649-T1.utr3p1 | KJC3_007649-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007649-T1.utr5p1 | KJC3_007649-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:3032181..3034428 - |
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