|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:3043563..3045934+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007653-T1 ID=KJC3_007653-T1|Name=KJC3_007653-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2372bp|location=Sequence derived from alignment at ch5:3043563..3045934+ (Aspergillus niger KJC3)
GTACAAGGCGCAGTGCATTGTGTCACTTGAGTGTGCCATGTGCGGCTATC
CCTCATCAACGCAGGAATGGTGGAGAGAAGCAATGAAAGTTAATCCAGAG
CGTTCCAGGCATTCTCATTGATCGTCCCGGCCATGGCCCCACGGCAATTG
ATCGATATCGGAGCTGCACCCTCCGCACGCCTACTGCTACACACTACAAT
CGTTCCCTCGGATACTCCGATGTTCATGACGTCGTGCCACCATTGCTTTC
CTAGAGCGGTGCAATCTAGCACTCTCTTCTCCGATGTTGGCTCTGCAGGG
CTGAGGTATGCGATATTCACTATATAAGACGCCCGTCTTGTTCCTGGTTT
GGCGCTCTCCTTCTATACTACATCCACCCACCTTCCCGTTCCTTGTCCAT
GTCTGGAGCTCCGTTCTGCTGGTACAGGACTTCAATCCTCGCCTAACCTC
TAAATTGACCTTACGACTTTGGTCGTTGTCCTGTTCGTGAAAGATTTCAT
GAACCCCATAACAACAGTGTTTCTTTGGATCGCCTAAGAAACAAATTGCT
CATCATGGATACAAAAGAACTTCTAGAGAAGCCTTCGGGAAAGGAGGGCG
CCTTGAGTCCGGATCGCCAACCGGAAAATATGCATGCGGAGCATGCCACA
CAGCCAGATGACGATAGTGAAATCCAAGGGAAGTTCCACGGCCCCGTGAA
ACGAGAACTTACCGAAGACGACTGCTACGAGAAGCTGGGCTTCTGCTTTC
CCTGGCACAAGAAATGGACCATACTTACGGTCATCTTCGTTGTGCAAATG
TCCATGAATTTCAACAGCAGCACCTACTCCAACGCCGTCCCGCAACTCTC
CGAACACTTTCATATCAGTGAACAGGCGGCCCGAGTAGGCCAAATGATTT
TCCTTGTCGCATATGCTTTCGGCTGTGAACTTTGGGCCCCATGGAGTGAG
GAATATGGCCGGTGGCCGATAATGCAGCTCAGCCTTCTGTTCGTGAATAT
CTGGCAGATACCGTGTGCGCTTGCTCCTAACTTCGCAACGATGGTTGTCT
GTCGTGGCCTTGGTGGTATTAGCTCAGCAGGCGGCTCTGTCACTCTCGGA
ATGACGGCTGACATGTGGGAGCCCGATGACCAGGGCTTCGCTGTCGCTTA
CGTGGTCTTGTCCTCCGTGGGAGGCACCACCATTGGACCAATCTTTGGCG
GAATGATGCAGCAATGGTTGAGCTGGCGGTGGAACTTCTGGATCCAGCTT
ATCTTTGGTGGTATTACTCAGCTCCTGCACTTTTTCCTTGTTTGTGAGAC
TCGATCGACCATCCTTCTTGATAGAGAGGCCAAACGCCGACGGCAAACCG
GCGAGGATCCCAATGTGTATGGGCCGAATGAGCTCAAGCCTTCTCGACTG
GATATCAAGGAGGTTCTACACATTTGGCGCCGACCCTTCGAGATGTTTCT
CTGTGAACCTATTGTGCTCTTCCTGTCTTTGCTCTCTGGTTTCTCTGATG
CGCTCATCTTCACCTGCATCGAGTCGTTCTCTTTAGTCTTCGCACAGTGG
GGTTTCAATGCCGTCCAAATTGGTCTGTGCTTCGTTGCCATCGTGATCGG
CTACTTGTTTGCCTACGGCATCTTCCTACCCGACATCTACCGTCAACAAG
TCGTGAGACGCCGTGAGGGAAATGCATCTCGATACGCTGAGCGACGCCTC
CTGCTTCTGCTCTTCATTGCGCCTCTCGAAACAATTGGATTGTTTGGATT
TTCCTGGACCTCAATGGGCCCTGAGTACACCCATTGGATCGTGCCGTTGG
TATTCGTGTTCCTGATTGCCATTGCCAATTACGGCATCTACATGGCGACA
ATTGACTACATGGTTGCTGCATATGGAGAATACTCCGCGTCCGCAACGGG
AGGCAATGGCTTTGCACGAGATCTGCTTGCCGGACTCTCAGCCATGTACG
CAACACCCATGTACACCAACATCGGTGGCAGATTTCATCTACAATGGGCA
AGCACCATTCTTGGCTGTCTGTCCGTTCTGGTGACGGTCCCCATATACAT
TTTCTACTGGAAGGGACCTGAGATTCGGGCTCGAAGTAAGTTTGCCCAGA
CCCTGGAAGCGGATCGGCAGCGGCACGCAGCCGTCCGTCGGTCCAGTCAG
GTTACCATTTCGCGCAAGGCATCCATGGCCTAAGCGTCTGGTTTGCGGTA
GAGGTATATCAGGGAGCGATCTGTCGGAGTTTCCTCTTTGGGCTGGTCCG
CATAACGCCATGTAATGATTGACGGTTAAGATCCCCATGTATGCATAGAT
ACCCGTTATGCTTTTTCTTTCTTTTTCTTTTTTCTTTTCTGTTCGATGTG
CTGTCTTACCTGGGCGTCGGGC back to topCoding sequence (CDS) from alignment at ch5:3043563..3045934+ >KJC3_007653-T1 ID=KJC3_007653-T1|Name=KJC3_007653-T1|organism=Aspergillus niger KJC3|type=CDS|length=1554bp|location=Sequence derived from alignment at ch5:3043563..3045934+ (Aspergillus niger KJC3)
ATGCATGCGGAGCATGCCACACAGCCAGATGACGATAGTGAAATCCAAGG
GAAGTTCCACGGCCCCGTGAAACGAGAACTTACCGAAGACGACTGCTACG
AGAAGCTGGGCTTCTGCTTTCCCTGGCACAAGAAATGGACCATACTTACG
GTCATCTTCGTTGTGCAAATGTCCATGAATTTCAACAGCAGCACCTACTC
CAACGCCGTCCCGCAACTCTCCGAACACTTTCATATCAGTGAACAGGCGG
CCCGAGTAGGCCAAATGATTTTCCTTGTCGCATATGCTTTCGGCTGTGAA
CTTTGGGCCCCATGGAGTGAGGAATATGGCCGGTGGCCGATAATGCAGCT
CAGCCTTCTGTTCGTGAATATCTGGCAGATACCGTGTGCGCTTGCTCCTA
ACTTCGCAACGATGGTTGTCTGTCGTGGCCTTGGTGGTATTAGCTCAGCA
GGCGGCTCTGTCACTCTCGGAATGACGGCTGACATGTGGGAGCCCGATGA
CCAGGGCTTCGCTGTCGCTTACGTGGTCTTGTCCTCCGTGGGAGGCACCA
CCATTGGACCAATCTTTGGCGGAATGATGCAGCAATGGTTGAGCTGGCGG
TGGAACTTCTGGATCCAGCTTATCTTTGGTGGTATTACTCAGCTCCTGCA
CTTTTTCCTTGTTTGTGAGACTCGATCGACCATCCTTCTTGATAGAGAGG
CCAAACGCCGACGGCAAACCGGCGAGGATCCCAATGTGTATGGGCCGAAT
GAGCTCAAGCCTTCTCGACTGGATATCAAGGAGGTTCTACACATTTGGCG
CCGACCCTTCGAGATGTTTCTCTGTGAACCTATTGTGCTCTTCCTGTCTT
TGCTCTCTGGTTTCTCTGATGCGCTCATCTTCACCTGCATCGAGTCGTTC
TCTTTAGTCTTCGCACAGTGGGGTTTCAATGCCGTCCAAATTGGTCTGTG
CTTCGTTGCCATCGTGATCGGCTACTTGTTTGCCTACGGCATCTTCCTAC
CCGACATCTACCGTCAACAAGTCGTGAGACGCCGTGAGGGAAATGCATCT
CGATACGCTGAGCGACGCCTCCTGCTTCTGCTCTTCATTGCGCCTCTCGA
AACAATTGGATTGTTTGGATTTTCCTGGACCTCAATGGGCCCTGAGTACA
CCCATTGGATCGTGCCGTTGGTATTCGTGTTCCTGATTGCCATTGCCAAT
TACGGCATCTACATGGCGACAATTGACTACATGGTTGCTGCATATGGAGA
ATACTCCGCGTCCGCAACGGGAGGCAATGGCTTTGCACGAGATCTGCTTG
CCGGACTCTCAGCCATGTACGCAACACCCATGTACACCAACATCGGTGGC
AGATTTCATCTACAATGGGCAAGCACCATTCTTGGCTGTCTGTCCGTTCT
GGTGACGGTCCCCATATACATTTTCTACTGGAAGGGACCTGAGATTCGGG
CTCGAAGTAAGTTTGCCCAGACCCTGGAAGCGGATCGGCAGCGGCACGCA
GCCGTCCGTCGGTCCAGTCAGGTTACCATTTCGCGCAAGGCATCCATGGC
CTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007653-T1.utr3p1 | KJC3_007653-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:3043563..3045934 + |
|
