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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:3101097..3102421+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007680-T1 ID=KJC3_007680-T1|Name=KJC3_007680-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1325bp|location=Sequence derived from alignment at ch5:3101097..3102421+ (Aspergillus niger KJC3)
CCCGTCATGGTCAGCTGCTGTGGATGGTCCGACAGACATATAATGGAAGC
CCGCCCCGGGCCAAAATCCCCCAGCATCATTCCTCCATTATCAGTACTAC
TTCAACAGATTAAAAAGCAACAAAAGCTCTGAATACTACTATTATTTACC
TCGCAAGCAAAATGTCTAAGATCATCACTGTCTTCGGTGCCACCGGCCAG
CAGGGCGGATCCGTCATCCGCACCATCCTCAACGACCCGGAGCTGTCCAA
GCAATTCAAGATTCGCGGTATCACTCGCGATGCCAGCAAGCCAGAAGCCC
AAGCTTTGGCTAAGCAGGGAGTTGAAATCAGAAATGCAAGTCTTATCTTT
CATCCTGCCTCGAATCCCGCTCTAACAGACCATCTAGGCGGACCTGAACT
CTAAAGAATCGATCCGGAGTGCCCTCGAGGGTAGCCACTCTGTCTTCCTA
GTCACCATTCCCGCCTGGGGTGTTCCTGGCTCCGATGCAGAATTGGTTCA
CGGGAAGAATGTCGCCGACGTGGCTAGGGAGTTGGATGTTCAGCACTTGA
TTTACTCGTCTCTGCTTAATGTGACAAAGACAACAGCCGGACGTCTCAAG
AATGTCCATCACTTCGATCATAAGGCCCAGGTGGAGCAGTATATTCGCTC
GCTGGGAGTGCCGGCGACCTTTGTCTTGCCGGGCTATTTCATGACCAATT
ACACTGCTGTTGGTCTGTTGCGGAAAGGCGAGAACGGGGTGTGGACTGTT
GCGTATCCTGTTGGGAAGGAGGCCAAGTTTCCGTTGATTGATATTGCGGC
TGATATGGGTATGTCGTCTTTAGCTTTTTCATTCAGTTAGAGTGTCCTGG
CTAACGCATAATGAAGGCAAATATGTCGCTGCATCTTTGAAGAACCGGTC
CGAGACACTCGGTGCTCAGATCCTAGTGGCGGAAGACTACTATACGCCTA
CTCGCATCCTGGAGGAGTTTGAACAGGTGACAGGACAGAAAACGCAGTTC
GTTCAGGTAGACTCCGAAACGTACATGTCTTTCATGCCTGGTCCGATTGG
CCAGGAAATGCTGGAGAATCATCTCTTCATTGGAAACCCGGGTTACTTCA
ATGGTCGCAGTCTCAACGAGAGTAAGGATTTAGTGGCTAAGGCCGGGTAC
AAGCTCACCAGCTGGAAGGAGTTCCTCCAGCAGAATAAGGCTTCATTTGC
TTAGTCTACCGATTTTGGTTCTTTCGGGTTGGTCAGAGCTCCGCGGTCTG
GTTTTGTACTTATTCAGAAAGGGATTAGCCTGAATCTTGTGTAAGCATAA
TACCTTAATTAGAGTAACTGTCTGG back to topCoding sequence (CDS) from alignment at ch5:3101097..3102421+ >KJC3_007680-T1 ID=KJC3_007680-T1|Name=KJC3_007680-T1|organism=Aspergillus niger KJC3|type=CDS|length=2799bp|location=Sequence derived from alignment at ch5:3101097..3102421+ (Aspergillus niger KJC3)
ATGTCTAAGATCATCACTGTCTTCGGTGCCACCGGCCAGCAGGGCGGATC
CGTCATCCGCACCATCCTCAACGACCCGGAGCTGTCCAAGCAATTCAAGA
TTCGCGGTATCACTCGCGATGCCAGCAAGCCAGAAGCCCAAGCTTTGGCT
AAGCAGGGAGTTGAAATCAGAAATGCGGACCTGAACTCTAAAGAATCGAT
CCGGAGTGCCCTCGAGGGTAGCCACTCTGTCTTCCTAGTCACCATTCCCG
CCTGGGGTGTTCCTGGCTCCGATGCAGAATTGGTTCACGGGAAGAATGTC
GCCGACGTGGCTAGGGAGTTGGATGTTCAGCACTTGATTTACTCGTCTCT
GCTTAATGTGACAAAGACAACAGCCGGACGTCTCAAGAATGTCCATCACT
TCGATCATAAGGCCCAGGTGGAGCAGTATATTCGCTCGCTGGGAGTGCCG
GCGACCTTTGTCTTGCCGGGCTATTTCATGACCAATTACACTGCTGTTGG
TCTGTTGCGGAAAGGCGAGAACGGGGTGTGGACTGTTGCGTATCCTGTTG
GGAAGGAGGCCAAGTTTCCGTTGATTGATATTGCGGCTGATATGGGCAAA
TATGTCGCTGCATCTTTGAAGAACCGGTCCGAGACACTCGGTGCTCAGAT
CCTAGTGGCGGAAGACTACTATACGCCTACTCGCATCCTGGAGGAGTTTG
AACAGGTGACAGGACAGAAAACGCAGTTCGTTCAGGTAGACTCCGAAACG
TACATGTCTTTCATGCCTGGTCCGATTGGCCAGGAAATGCTGGAGAATCA
TCTCTTCATTGGAAACCCGGGTTACTTCAATGGTCGCAGTCTCAACGAGA
GTAAGGATTTAGTGGCTAAGGCCGGGTACAAGCTCACCAGCTGGAAGGAG
TTCCTCCAGCAGAATAAGGCTTCATTTGCTTAGATGTCTAAGATCATCAC
TGTCTTCGGTGCCACCGGCCAGCAGGGCGGATCCGTCATCCGCACCATCC
TCAACGACCCGGAGCTGTCCAAGCAATTCAAGATTCGCGGTATCACTCGC
GATGCCAGCAAGCCAGAAGCCCAAGCTTTGGCTAAGCAGGGAGTTGAAAT
CAGAAATGCGGACCTGAACTCTAAAGAATCGATCCGGAGTGCCCTCGAGG
GTAGCCACTCTGTCTTCCTAGTCACCATTCCCGCCTGGGGTGTTCCTGGC
TCCGATGCAGAATTGGTTCACGGGAAGAATGTCGCCGACGTGGCTAGGGA
GTTGGATGTTCAGCACTTGATTTACTCGTCTCTGCTTAATGTGACAAAGA
CAACAGCCGGACGTCTCAAGAATGTCCATCACTTCGATCATAAGGCCCAG
GTGGAGCAGTATATTCGCTCGCTGGGAGTGCCGGCGACCTTTGTCTTGCC
GGGCTATTTCATGACCAATTACACTGCTGTTGGTCTGTTGCGGAAAGGCG
AGAACGGGGTGTGGACTGTTGCGTATCCTGTTGGGAAGGAGGCCAAGTTT
CCGTTGATTGATATTGCGGCTGATATGGGCAAATATGTCGCTGCATCTTT
GAAGAACCGGTCCGAGACACTCGGTGCTCAGATCCTAGTGGCGGAAGACT
ACTATACGCCTACTCGCATCCTGGAGGAGTTTGAACAGGTGACAGGACAG
AAAACGCAGTTCGTTCAGGTAGACTCCGAAACGTACATGTCTTTCATGCC
TGGTCCGATTGGCCAGGAAATGCTGGAGAATCATCTCTTCATTGGAAACC
CGGGTTACTTCAATGGTCGCAGTCTCAACGAGAGTAAGGATTTAGTGGCT
AAGGCCGGGTACAAGCTCACCAGCTGGAAGGAGTTCCTCCAGCAGAATAA
GGCTTCATTTGCTTAGATGTCTAAGATCATCACTGTCTTCGGTGCCACCG
GCCAGCAGGGCGGATCCGTCATCCGCACCATCCTCAACGACCCGGAGCTG
TCCAAGCAATTCAAGATTCGCGGTATCACTCGCGATGCCAGCAAGCCAGA
AGCCCAAGCTTTGGCTAAGCAGGGAGTTGAAATCAGAAATGCGGACCTGA
ACTCTAAAGAATCGATCCGGAGTGCCCTCGAGGGTAGCCACTCTGTCTTC
CTAGTCACCATTCCCGCCTGGGGTGTTCCTGGCTCCGATGCAGAATTGGT
TCACGGGAAGAATGTCGCCGACGTGGCTAGGGAGTTGGATGTTCAGCACT
TGATTTACTCGTCTCTGCTTAATGTGACAAAGACAACAGCCGGACGTCTC
AAGAATGTCCATCACTTCGATCATAAGGCCCAGGTGGAGCAGTATATTCG
CTCGCTGGGAGTGCCGGCGACCTTTGTCTTGCCGGGCTATTTCATGACCA
ATTACACTGCTGTTGGTCTGTTGCGGAAAGGCGAGAACGGGGTGTGGACT
GTTGCGTATCCTGTTGGGAAGGAGGCCAAGTTTCCGTTGATTGATATTGC
GGCTGATATGGGCAAATATGTCGCTGCATCTTTGAAGAACCGGTCCGAGA
CACTCGGTGCTCAGATCCTAGTGGCGGAAGACTACTATACGCCTACTCGC
ATCCTGGAGGAGTTTGAACAGGTGACAGGACAGAAAACGCAGTTCGTTCA
GGTAGACTCCGAAACGTACATGTCTTTCATGCCTGGTCCGATTGGCCAGG
AAATGCTGGAGAATCATCTCTTCATTGGAAACCCGGGTTACTTCAATGGT
CGCAGTCTCAACGAGAGTAAGGATTTAGTGGCTAAGGCCGGGTACAAGCT
CACCAGCTGGAAGGAGTTCCTCCAGCAGAATAAGGCTTCATTTGCTTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007680-T1.utr5p1 | KJC3_007680-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007680-T1.utr3p1 | KJC3_007680-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:3101097..3102421 + |
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