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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:3154295..3156976+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007702-T1 ID=KJC3_007702-T1|Name=KJC3_007702-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2682bp|location=Sequence derived from alignment at ch5:3154295..3156976+ (Aspergillus niger KJC3)
CAGTTTACAGCGCGAGGATATCCAATCCCGTTGTTCATTATACCCTCTAA
GCTCCGTATCTCGGGAATTCCCTCGCTTAATTCCCTCCCTGCACGGTCTC
CCCGCAAATGTCAGATCGCGACACTGCGTCATGCTGGCTGTGCCCCCAAC
TAGCTGCTCTTGGCTCCCCCAGATTATCGGCCCCCTGCTGTCTCTGAATT
AGCCTGTCCTGGCCCACGCTGCTTTACAGTCCGCTCCCCTCTCATATCCT
TCGAACTGTCTATTTCTCCGAGCAAGGTCGGCCATGTGCGGAAATGGGTC
CCAAGCGCCAGTCTTCTCCGACCACCCCCCGGGCCTGTCAATTCTGTCGC
GTCCGCAAGATCCGTTGTGACAACGAGAAGCCCACCTGCGGCTCCTGTCA
GCGTCATGATCGACAATGTGTCTATGTGGTCGACCCACCCCGCCAGAGGT
AGGTGTTCTTCCCACCTGGACGCCTCTCGCCATCCATGGCTGCAATTATC
TTGCCACGCATGCGCTGACGCTGCTGCTCCAGGCCGTCCCGGGCTCTCAT
CAATGCCGCTCACCGCCAGAGGCGTGCGGCGGAGAACGTGATTATTGCTT
TGAAGAAGGCTGATCCAGTTGCTCGAACTGCTATCCTTGATTCTATCCAT
GTCAAGGACGGAGTCCTGCAACTACCGGCATCATTGGCCGGCCTCGATGC
TAATATCAACGACACTCCGGTATCTCAACCCACCCAAGCCTCGGACAATA
GCTCGAACGTGTACAGTACGCCAAATGACGAGCTGAATGAGAGTAGCTCC
GAAGATGATGACTACGATCCCACCACCTTTCTCTCCCGGGACGAATGCGG
CACTGTCGGCATCTTTGGCCCGTCGTCGGCGTTGCATGCCCGGAGCCCTC
TCGGCCTAGCCAGCAGTGCCAACTCACGGCCTGCTGCAGAGCCAGACCGA
TATCAACTTATCGCCGAGGCCGCCCTCCAGCGCCAACGTGAGCCTGATCT
ACGTCGGTTACCGACCATTGGAGGGATACCGTCCGAGTTGGCTTTGCATC
TGCTTGATCTACACTGGAACCGGCAGCATCACACATTCCTACTAACATAT
CGTCCAGCATTCATGCGTGATCTCGTCACTGGCGGCCCGTACTGCTCGGA
CTTTCTGCTCAACGCCGTCTTCGCTTGTTCGAGCAAGTTCTCAACACGGG
TCGAGGTGCGGGAAGATCCGCAACGGCCCGAATCGGCCGGCAAACGGTTC
TTCGATCGGTGTGATCAACTGCTGGCAGAACAGTCGCTCTTGACGCATTC
GAGCATCCCGACCATTGCCGGATTAATCATGCTTGGCAGCACCTTCAATG
CCCGGGGACAGACTTCCAAAGGCTGGCTCTACACGGGATTTGCTCTGCGC
ATGGTATACGACCTCGGCTTGCATTTGGACTGCAAGGAGGTTGCTGCCAG
TGCGGAGGATATCGAGGTCCGACGCCGTGTCTTTTGGGCAGCCTTTATCT
GTGATAAGCTCCAGAGCTTGTATTTTGGACGGCCTTTCACAATTCAGCTA
CGTGATGCGCATGTGTCGCGAGACTTCATGGATACCTTTGAAGAGAACGA
GTTATGGATGCCGTATATCGACCCCCTCAAGCCAGACAATACTGCCCGCT
CTCACGTGCCCACTCGCATTTACTCCGTGACCGTGTTTCAGCAACTATGT
TCTCTGTCCAAGATTATGACCAGCATTATTGACCGCTTCTACATGGCTGG
TGCCACTGGCAGCAAGACACGCAAGCATCTGGAGCTTATTGACCGTCGTC
TTGAGATTTGGTATCGTAAATTGCCAGCAGAGCTGCGATATGAGCCCTGG
GCAGATGATGGCCAATCGCCGCACGCCACTGTAGCACCCAATGTCATTAT
CCTGCTAACTACCTACAATGCCCTCATCATTCTACTCCATCGTCCGTTCA
TGGGTAGTGGGCATCTGCGCTCCGACGACCCGCCCGCGGACTCCTGGGAG
CGTTGTGTCACGGCTGCCCGCAACATCACCAGCCTGGCGCTGGCCTATCG
ATCAGCCTACTCCCTGCGTCGAGCCAACTACATGCTCAGCTACGCGGTAT
ATGTAGCCTGCACTATTCATGCGCGCAATCCGGCCATCCGAGAAAGCACT
CGCCGCAAGGAAGCGTCATCTCCGCTGACAGTATGTCTACGTTGTTTGGA
CGAGCTGGCCATCCCCAATTGCGGCGTCTCGGCGCCGTCGAAGATTATTC
GCCGGCTCATGGAAGCCAACGGCATGTCCATTCAGACTGGTAAGGAGCCT
ACGCACTCTTCAACAAATACCGACGTCACTAACGACGTTCAGGATGTGAC
CCGGCTATTCAGGATCCCTTCCAGGTAGATATAAATTTAGATTTCCAAAC
CTTTCCCGGTCTGGATTTCAGCCCTGCGCGACTCGATCATGCCAACCACA
TCTCTGGCTTCCAGGACTTCAACCAGGACCTGGACCTGCTGTTCGGGTTC
ATGAACGAGCCCGACGTGTCCATGTCCTCCATGTTCACTGGGGTTGTACC
CTATTAGCGACGTGTATATGGACCTCACTTTCGACAGAACCGTCATTCAA
TCAAACACATAAAGTACATAACATCATGAAAACATCATATCGTAACTGAA
TGAGCTCACTCCAGAACACTCGGATCTTCCTT back to topCoding sequence (CDS) from alignment at ch5:3154295..3156976+ >KJC3_007702-T1 ID=KJC3_007702-T1|Name=KJC3_007702-T1|organism=Aspergillus niger KJC3|type=CDS|length=6381bp|location=Sequence derived from alignment at ch5:3154295..3156976+ (Aspergillus niger KJC3)
ATGGGTCCCAAGCGCCAGTCTTCTCCGACCACCCCCCGGGCCTGTCAATT
CTGTCGCGTCCGCAAGATCCGTTGTGACAACGAGAAGCCCACCTGCGGCT
CCTGTCAGCGTCATGATCGACAATGTGTCTATGTGGTCGACCCACCCCGC
CAGAGGCCGTCCCGGGCTCTCATCAATGCCGCTCACCGCCAGAGGCGTGC
GGCGGAGAACGTGATTATTGCTTTGAAGAAGGCTGATCCAGTTGCTCGAA
CTGCTATCCTTGATTCTATCCATGTCAAGGACGGAGTCCTGCAACTACCG
GCATCATTGGCCGGCCTCGATGCTAATATCAACGACACTCCGGTATCTCA
ACCCACCCAAGCCTCGGACAATAGCTCGAACGTGTACAGTACGCCAAATG
ACGAGCTGAATGAGAGTAGCTCCGAAGATGATGACTACGATCCCACCACC
TTTCTCTCCCGGGACGAATGCGGCACTGTCGGCATCTTTGGCCCGTCGTC
GGCGTTGCATGCCCGGAGCCCTCTCGGCCTAGCCAGCAGTGCCAACTCAC
GGCCTGCTGCAGAGCCAGACCGATATCAACTTATCGCCGAGGCCGCCCTC
CAGCGCCAACGTGAGCCTGATCTACGTCGGTTACCGACCATTGGAGGGAT
ACCGTCCGAGTTGGCTTTGCATCTGCTTGATCTACACTGGAACCGGCAGC
ATCACACATTCCTACTAACATATCGTCCAGCATTCATGCGTGATCTCGTC
ACTGGCGGCCCGTACTGCTCGGACTTTCTGCTCAACGCCGTCTTCGCTTG
TTCGAGCAAGTTCTCAACACGGGTCGAGGTGCGGGAAGATCCGCAACGGC
CCGAATCGGCCGGCAAACGGTTCTTCGATCGGTGTGATCAACTGCTGGCA
GAACAGTCGCTCTTGACGCATTCGAGCATCCCGACCATTGCCGGATTAAT
CATGCTTGGCAGCACCTTCAATGCCCGGGGACAGACTTCCAAAGGCTGGC
TCTACACGGGATTTGCTCTGCGCATGGTATACGACCTCGGCTTGCATTTG
GACTGCAAGGAGGTTGCTGCCAGTGCGGAGGATATCGAGGTCCGACGCCG
TGTCTTTTGGGCAGCCTTTATCTGTGATAAGCTCCAGAGCTTGTATTTTG
GACGGCCTTTCACAATTCAGCTACGTGATGCGCATGTGTCGCGAGACTTC
ATGGATACCTTTGAAGAGAACGAGTTATGGATGCCGTATATCGACCCCCT
CAAGCCAGACAATACTGCCCGCTCTCACGTGCCCACTCGCATTTACTCCG
TGACCGTGTTTCAGCAACTATGTTCTCTGTCCAAGATTATGACCAGCATT
ATTGACCGCTTCTACATGGCTGGTGCCACTGGCAGCAAGACACGCAAGCA
TCTGGAGCTTATTGACCGTCGTCTTGAGATTTGGTATCGTAAATTGCCAG
CAGAGCTGCGATATGAGCCCTGGGCAGATGATGGCCAATCGCCGCACGCC
ACTGTAGCACCCAATGTCATTATCCTGCTAACTACCTACAATGCCCTCAT
CATTCTACTCCATCGTCCGTTCATGGGTAGTGGGCATCTGCGCTCCGACG
ACCCGCCCGCGGACTCCTGGGAGCGTTGTGTCACGGCTGCCCGCAACATC
ACCAGCCTGGCGCTGGCCTATCGATCAGCCTACTCCCTGCGTCGAGCCAA
CTACATGCTCAGCTACGCGGTATATGTAGCCTGCACTATTCATGCGCGCA
ATCCGGCCATCCGAGAAAGCACTCGCCGCAAGGAAGCGTCATCTCCGCTG
ACAGTATGTCTACGTTGTTTGGACGAGCTGGCCATCCCCAATTGCGGCGT
CTCGGCGCCGTCGAAGATTATTCGCCGGCTCATGGAAGCCAACGGCATGT
CCATTCAGACTGGATGTGACCCGGCTATTCAGGATCCCTTCCAGGTAGAT
ATAAATTTAGATTTCCAAACCTTTCCCGGTCTGGATTTCAGCCCTGCGCG
ACTCGATCATGCCAACCACATCTCTGGCTTCCAGGACTTCAACCAGGACC
TGGACCTGCTGTTCGGGTTCATGAACGAGCCCGACGTGTCCATGTCCTCC
ATGTTCACTGGGGTTGTACCCTATTAGATGGGTCCCAAGCGCCAGTCTTC
TCCGACCACCCCCCGGGCCTGTCAATTCTGTCGCGTCCGCAAGATCCGTT
GTGACAACGAGAAGCCCACCTGCGGCTCCTGTCAGCGTCATGATCGACAA
TGTGTCTATGTGGTCGACCCACCCCGCCAGAGGCCGTCCCGGGCTCTCAT
CAATGCCGCTCACCGCCAGAGGCGTGCGGCGGAGAACGTGATTATTGCTT
TGAAGAAGGCTGATCCAGTTGCTCGAACTGCTATCCTTGATTCTATCCAT
GTCAAGGACGGAGTCCTGCAACTACCGGCATCATTGGCCGGCCTCGATGC
TAATATCAACGACACTCCGGTATCTCAACCCACCCAAGCCTCGGACAATA
GCTCGAACGTGTACAGTACGCCAAATGACGAGCTGAATGAGAGTAGCTCC
GAAGATGATGACTACGATCCCACCACCTTTCTCTCCCGGGACGAATGCGG
CACTGTCGGCATCTTTGGCCCGTCGTCGGCGTTGCATGCCCGGAGCCCTC
TCGGCCTAGCCAGCAGTGCCAACTCACGGCCTGCTGCAGAGCCAGACCGA
TATCAACTTATCGCCGAGGCCGCCCTCCAGCGCCAACGTGAGCCTGATCT
ACGTCGGTTACCGACCATTGGAGGGATACCGTCCGAGTTGGCTTTGCATC
TGCTTGATCTACACTGGAACCGGCAGCATCACACATTCCTACTAACATAT
CGTCCAGCATTCATGCGTGATCTCGTCACTGGCGGCCCGTACTGCTCGGA
CTTTCTGCTCAACGCCGTCTTCGCTTGTTCGAGCAAGTTCTCAACACGGG
TCGAGGTGCGGGAAGATCCGCAACGGCCCGAATCGGCCGGCAAACGGTTC
TTCGATCGGTGTGATCAACTGCTGGCAGAACAGTCGCTCTTGACGCATTC
GAGCATCCCGACCATTGCCGGATTAATCATGCTTGGCAGCACCTTCAATG
CCCGGGGACAGACTTCCAAAGGCTGGCTCTACACGGGATTTGCTCTGCGC
ATGGTATACGACCTCGGCTTGCATTTGGACTGCAAGGAGGTTGCTGCCAG
TGCGGAGGATATCGAGGTCCGACGCCGTGTCTTTTGGGCAGCCTTTATCT
GTGATAAGCTCCAGAGCTTGTATTTTGGACGGCCTTTCACAATTCAGCTA
CGTGATGCGCATGTGTCGCGAGACTTCATGGATACCTTTGAAGAGAACGA
GTTATGGATGCCGTATATCGACCCCCTCAAGCCAGACAATACTGCCCGCT
CTCACGTGCCCACTCGCATTTACTCCGTGACCGTGTTTCAGCAACTATGT
TCTCTGTCCAAGATTATGACCAGCATTATTGACCGCTTCTACATGGCTGG
TGCCACTGGCAGCAAGACACGCAAGCATCTGGAGCTTATTGACCGTCGTC
TTGAGATTTGGTATCGTAAATTGCCAGCAGAGCTGCGATATGAGCCCTGG
GCAGATGATGGCCAATCGCCGCACGCCACTGTAGCACCCAATGTCATTAT
CCTGCTAACTACCTACAATGCCCTCATCATTCTACTCCATCGTCCGTTCA
TGGGTAGTGGGCATCTGCGCTCCGACGACCCGCCCGCGGACTCCTGGGAG
CGTTGTGTCACGGCTGCCCGCAACATCACCAGCCTGGCGCTGGCCTATCG
ATCAGCCTACTCCCTGCGTCGAGCCAACTACATGCTCAGCTACGCGGTAT
ATGTAGCCTGCACTATTCATGCGCGCAATCCGGCCATCCGAGAAAGCACT
CGCCGCAAGGAAGCGTCATCTCCGCTGACAGTATGTCTACGTTGTTTGGA
CGAGCTGGCCATCCCCAATTGCGGCGTCTCGGCGCCGTCGAAGATTATTC
GCCGGCTCATGGAAGCCAACGGCATGTCCATTCAGACTGGATGTGACCCG
GCTATTCAGGATCCCTTCCAGGTAGATATAAATTTAGATTTCCAAACCTT
TCCCGGTCTGGATTTCAGCCCTGCGCGACTCGATCATGCCAACCACATCT
CTGGCTTCCAGGACTTCAACCAGGACCTGGACCTGCTGTTCGGGTTCATG
AACGAGCCCGACGTGTCCATGTCCTCCATGTTCACTGGGGTTGTACCCTA
TTAGATGGGTCCCAAGCGCCAGTCTTCTCCGACCACCCCCCGGGCCTGTC
AATTCTGTCGCGTCCGCAAGATCCGTTGTGACAACGAGAAGCCCACCTGC
GGCTCCTGTCAGCGTCATGATCGACAATGTGTCTATGTGGTCGACCCACC
CCGCCAGAGGCCGTCCCGGGCTCTCATCAATGCCGCTCACCGCCAGAGGC
GTGCGGCGGAGAACGTGATTATTGCTTTGAAGAAGGCTGATCCAGTTGCT
CGAACTGCTATCCTTGATTCTATCCATGTCAAGGACGGAGTCCTGCAACT
ACCGGCATCATTGGCCGGCCTCGATGCTAATATCAACGACACTCCGGTAT
CTCAACCCACCCAAGCCTCGGACAATAGCTCGAACGTGTACAGTACGCCA
AATGACGAGCTGAATGAGAGTAGCTCCGAAGATGATGACTACGATCCCAC
CACCTTTCTCTCCCGGGACGAATGCGGCACTGTCGGCATCTTTGGCCCGT
CGTCGGCGTTGCATGCCCGGAGCCCTCTCGGCCTAGCCAGCAGTGCCAAC
TCACGGCCTGCTGCAGAGCCAGACCGATATCAACTTATCGCCGAGGCCGC
CCTCCAGCGCCAACGTGAGCCTGATCTACGTCGGTTACCGACCATTGGAG
GGATACCGTCCGAGTTGGCTTTGCATCTGCTTGATCTACACTGGAACCGG
CAGCATCACACATTCCTACTAACATATCGTCCAGCATTCATGCGTGATCT
CGTCACTGGCGGCCCGTACTGCTCGGACTTTCTGCTCAACGCCGTCTTCG
CTTGTTCGAGCAAGTTCTCAACACGGGTCGAGGTGCGGGAAGATCCGCAA
CGGCCCGAATCGGCCGGCAAACGGTTCTTCGATCGGTGTGATCAACTGCT
GGCAGAACAGTCGCTCTTGACGCATTCGAGCATCCCGACCATTGCCGGAT
TAATCATGCTTGGCAGCACCTTCAATGCCCGGGGACAGACTTCCAAAGGC
TGGCTCTACACGGGATTTGCTCTGCGCATGGTATACGACCTCGGCTTGCA
TTTGGACTGCAAGGAGGTTGCTGCCAGTGCGGAGGATATCGAGGTCCGAC
GCCGTGTCTTTTGGGCAGCCTTTATCTGTGATAAGCTCCAGAGCTTGTAT
TTTGGACGGCCTTTCACAATTCAGCTACGTGATGCGCATGTGTCGCGAGA
CTTCATGGATACCTTTGAAGAGAACGAGTTATGGATGCCGTATATCGACC
CCCTCAAGCCAGACAATACTGCCCGCTCTCACGTGCCCACTCGCATTTAC
TCCGTGACCGTGTTTCAGCAACTATGTTCTCTGTCCAAGATTATGACCAG
CATTATTGACCGCTTCTACATGGCTGGTGCCACTGGCAGCAAGACACGCA
AGCATCTGGAGCTTATTGACCGTCGTCTTGAGATTTGGTATCGTAAATTG
CCAGCAGAGCTGCGATATGAGCCCTGGGCAGATGATGGCCAATCGCCGCA
CGCCACTGTAGCACCCAATGTCATTATCCTGCTAACTACCTACAATGCCC
TCATCATTCTACTCCATCGTCCGTTCATGGGTAGTGGGCATCTGCGCTCC
GACGACCCGCCCGCGGACTCCTGGGAGCGTTGTGTCACGGCTGCCCGCAA
CATCACCAGCCTGGCGCTGGCCTATCGATCAGCCTACTCCCTGCGTCGAG
CCAACTACATGCTCAGCTACGCGGTATATGTAGCCTGCACTATTCATGCG
CGCAATCCGGCCATCCGAGAAAGCACTCGCCGCAAGGAAGCGTCATCTCC
GCTGACAGTATGTCTACGTTGTTTGGACGAGCTGGCCATCCCCAATTGCG
GCGTCTCGGCGCCGTCGAAGATTATTCGCCGGCTCATGGAAGCCAACGGC
ATGTCCATTCAGACTGGATGTGACCCGGCTATTCAGGATCCCTTCCAGGT
AGATATAAATTTAGATTTCCAAACCTTTCCCGGTCTGGATTTCAGCCCTG
CGCGACTCGATCATGCCAACCACATCTCTGGCTTCCAGGACTTCAACCAG
GACCTGGACCTGCTGTTCGGGTTCATGAACGAGCCCGACGTGTCCATGTC
CTCCATGTTCACTGGGGTTGTACCCTATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007702-T1.utr5p1 | KJC3_007702-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007702-T1.utr3p1 | KJC3_007702-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR007219 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:3154295..3156976 + |
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