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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:3165147..3167591+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007707-T1 ID=KJC3_007707-T1|Name=KJC3_007707-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2445bp|location=Sequence derived from alignment at ch5:3165147..3167591+ (Aspergillus niger KJC3)
TATTGCTCGGGTATGGAAAAACGCTTAGCTAGCCGTCGTGTTCCTGATGA
GTTGCGGAAACGTACTTTCGCGAGCTGTGACACCTGCCGGAAGGCAAGTG
GCGACCTTATCCTGCCTGGCTGGCTCTTCTCCTGTCAGAATTATGCTAAC
CACGATGTATTAGCGCCGCTGCAAATGTATTCGTCGCGGAGGCTCGGATC
AAGACTGTGTCGCTTGCCAAAGATCTGGCATCCCGTGCGTATCCAGCTAT
CAGCGAAAGACACGACTGTACGGAAGTGTCGAGACCATCCGCGATCGGTA
TGCCGCGCTGATCCTCCCTGGATTTACTGTCTGGCTGATTAACACTCTTG
TAGGATTCACTGTCTTGAAGCAATCGTTAAGGGGGTGTTTCCGGGTGAGC
CCGTTGATAGTATTTCTGCTCTGTTAGAGCTGGGCCGGAAAGCCGGCTAT
GAAATGCCCAAGCTGGACCTTCCACAACAAAATGAGAATGAGCGGAGAGT
TGAGCTACGGAGCTCAGAAAGCGCCTATCAGACCCTGACGTGCGCTAGCA
ATAGCAACGATCAGCCAGGGTGTATCAGAACCAGCCAGCGCCCACCGCAG
CTGGTCAAAGACAGCCGTGGCCATAGTCATTACATCGGGCCGTCAGCATC
CCTTGCATTCTTTGCGGATCTTCGCAGCCTTGTATCGGAGCAACAGCCTT
CCTCTTGCTTCGCTGCAGATACTCTGACGGAGTCTCTCGAAGCTCGACAA
GATTCGAGTCGCTTGTCACCGTCAGCAGTGAGTACAGGCATGACGCCACT
TGCACGCGATGAAGAATTATCGTTTGTCAAGGCACAGTTGCAGGAAATGC
CCCGGGATTGTCTGCTGGCAATAATACATGCCTTCTTTCACTCTGTAAAT
TCAGATTTCCCACTACTGGACAGGGGATACTTCTTTAACAAGCTCGAGTC
CTACATCTACCCCATCGGCCCCGCTGAGGGATTGGAAGATGGTTGGGTGG
CCTGTATCCATGCTGTTCTCGCCTTTGGCTGCTGGATCCTGGATGATGAC
GCTAGATTCGAAGCCGATGAACTAAGCACGCTAAGGTCTCGCTGCTGGAA
CCTCGCTCGAGGAGCTTTGGCCGGCTTATTGACCTCGTGTACGGTCTCCA
ATATCCAAGCCCTGTTGCTTATGGCACTCTTCCTGCACAACAACAATGAT
CGGAATGCAGCGTGGACCCTAACTGGTAGTGCTGCGAGGATTGCTATTGC
TTTGGGATTGCATCGCAGCGATATCGACGAGAGCCTTCGCCTAACAGAAC
AAGACTCCAGAAGGCGAGTCTGGTCTACGCTATTTACATTTGAGCAATTT
CTCTGCTTATGTTTGGGCCGCCCAAGTGTGATCGACAGTCGGGAGGTAAC
CCTGGGACCGGCTCCCGAAGTCTCTGCTACTGCCCTTCTCGGTCATCCCA
GCCATCACCAGGTGGCAACTGACCTTCAACAACAAGTCAGTCGGCTCCGC
GATGCGATCGCTTTCTTGCATCGGCCTGCTTCACCTGTATCATCCGCTGA
TACGCAATGTACTGATCCAATATCACTCTTGAGTAACCTTAAAACCTGGG
AAGCTGAGATACCAACTTATCTCATTATACCATCCGATATCTTGGATACG
TGCATCACCCCCTCGACGGCAGTGCTGAAAGCGTTCGTCCCCAGATATCC
ACCAGACCAACTACGGCCAACGGTTCTCCTCCATTTAACCTATAATAATC
TCCTTATTCAGCTTACACGGCCATATTTGCTTACTGTAATTTCGATGAGC
CGAAGGCAGAACCCGAAGCAGCAGTACCCTTGGACTCTACCGAGAGATAG
TTTCCAAAACGTGCAGAAGAGCGCTGAGCACCTGGCGTCTAGCTGCGTCA
CAGCAGCGATGCGCATTGTTAATCTTCTCGTCCTGCTTGATTATGCCAAT
GGGGTCAATGGAAAGACTGGCCTGGACCTTTTCTACGGGTACTCGGCTGG
AATGGTTCTGCTCCTCCGTCGGCTGTGGGTCATGCCCCCGGATCTTCCGA
AGTCTTTGTGGCAGCTTGAAGGTGCAGCTCAGAAAGATGTTCAGTGCATG
GTGACAAAGTTGCAGTCCATAATGCAAGTAAACGCGAAATGTCCGACAAT
GCAGAGATTTAATGCAGTGCTTCAAAAGTTCGACGAAGCCGTTCTCGCGA
ACGGGCAACTTCGGGAGCGAGGTGAGACTGATGAAGTCGCACCGTTGGGC
TTGGCACAGGGGGGAGGAATTGACCATGTGCCCTCACAGCTTCGCATACC
TTGCGTCGATAGTCTTAACAGCGACCTGGATGGTACTGCTTCGGATAGCC
CGAGCCTGTGGCAAGAGTCTTTGCAGACGATCACGCAGTATAGTCTCGAC
TGGAGCAACTTTGAGCAGTTCCTTGGTAGCATCAATGTGGCATAG back to topCoding sequence (CDS) from alignment at ch5:3165147..3167591+ >KJC3_007707-T1 ID=KJC3_007707-T1|Name=KJC3_007707-T1|organism=Aspergillus niger KJC3|type=CDS|length=6921bp|location=Sequence derived from alignment at ch5:3165147..3167591+ (Aspergillus niger KJC3)
ATGGAAAAACGCTTAGCTAGCCGTCGTGTTCCTGATGAGTTGCGGAAACG
TACTTTCGCGAGCTGTGACACCTGCCGGAAGCGCCGCTGCAAATGTATTC
GTCGCGGAGGCTCGGATCAAGACTGTGTCGCTTGCCAAAGATCTGGCATC
CCGTGCGTATCCAGCTATCAGCGAAAGACACGACTGTACGGAAGTGTCGA
GACCATCCGCGATCGGATTCACTGTCTTGAAGCAATCGTTAAGGGGGTGT
TTCCGGGTGAGCCCGTTGATAGTATTTCTGCTCTGTTAGAGCTGGGCCGG
AAAGCCGGCTATGAAATGCCCAAGCTGGACCTTCCACAACAAAATGAGAA
TGAGCGGAGAGTTGAGCTACGGAGCTCAGAAAGCGCCTATCAGACCCTGA
CGTGCGCTAGCAATAGCAACGATCAGCCAGGGTGTATCAGAACCAGCCAG
CGCCCACCGCAGCTGGTCAAAGACAGCCGTGGCCATAGTCATTACATCGG
GCCGTCAGCATCCCTTGCATTCTTTGCGGATCTTCGCAGCCTTGTATCGG
AGCAACAGCCTTCCTCTTGCTTCGCTGCAGATACTCTGACGGAGTCTCTC
GAAGCTCGACAAGATTCGAGTCGCTTGTCACCGTCAGCAGTGAGTACAGG
CATGACGCCACTTGCACGCGATGAAGAATTATCGTTTGTCAAGGCACAGT
TGCAGGAAATGCCCCGGGATTGTCTGCTGGCAATAATACATGCCTTCTTT
CACTCTGTAAATTCAGATTTCCCACTACTGGACAGGGGATACTTCTTTAA
CAAGCTCGAGTCCTACATCTACCCCATCGGCCCCGCTGAGGGATTGGAAG
ATGGTTGGGTGGCCTGTATCCATGCTGTTCTCGCCTTTGGCTGCTGGATC
CTGGATGATGACGCTAGATTCGAAGCCGATGAACTAAGCACGCTAAGGTC
TCGCTGCTGGAACCTCGCTCGAGGAGCTTTGGCCGGCTTATTGACCTCGT
GTACGGTCTCCAATATCCAAGCCCTGTTGCTTATGGCACTCTTCCTGCAC
AACAACAATGATCGGAATGCAGCGTGGACCCTAACTGGTAGTGCTGCGAG
GATTGCTATTGCTTTGGGATTGCATCGCAGCGATATCGACGAGAGCCTTC
GCCTAACAGAACAAGACTCCAGAAGGCGAGTCTGGTCTACGCTATTTACA
TTTGAGCAATTTCTCTGCTTATGTTTGGGCCGCCCAAGTGTGATCGACAG
TCGGGAGGTAACCCTGGGACCGGCTCCCGAAGTCTCTGCTACTGCCCTTC
TCGGTCATCCCAGCCATCACCAGGTGGCAACTGACCTTCAACAACAAGTC
AGTCGGCTCCGCGATGCGATCGCTTTCTTGCATCGGCCTGCTTCACCTGT
ATCATCCGCTGATACGCAATGTACTGATCCAATATCACTCTTGAGTAACC
TTAAAACCTGGGAAGCTGAGATACCAACTTATCTCATTATACCATCCGAT
ATCTTGGATACGTGCATCACCCCCTCGACGGCAGTGCTGAAAGCGTTCGT
CCCCAGATATCCACCAGACCAACTACGGCCAACGGTTCTCCTCCATTTAA
CCTATAATAATCTCCTTATTCAGCTTACACGGCCATATTTGCTTACTGTA
ATTTCGATGAGCCGAAGGCAGAACCCGAAGCAGCAGTACCCTTGGACTCT
ACCGAGAGATAGTTTCCAAAACGTGCAGAAGAGCGCTGAGCACCTGGCGT
CTAGCTGCGTCACAGCAGCGATGCGCATTGTTAATCTTCTCGTCCTGCTT
GATTATGCCAATGGGGTCAATGGAAAGACTGGCCTGGACCTTTTCTACGG
GTACTCGGCTGGAATGGTTCTGCTCCTCCGTCGGCTGTGGGTCATGCCCC
CGGATCTTCCGAAGTCTTTGTGGCAGCTTGAAGGTGCAGCTCAGAAAGAT
GTTCAGTGCATGGTGACAAAGTTGCAGTCCATAATGCAAGTAAACGCGAA
ATGTCCGACAATGCAGAGATTTAATGCAGTGCTTCAAAAGTTCGACGAAG
CCGTTCTCGCGAACGGGCAACTTCGGGAGCGAGGTGAGACTGATGAAGTC
GCACCGTTGGGCTTGGCACAGGGGGGAGGAATTGACCATGTGCCCTCACA
GCTTCGCATACCTTGCGTCGATAGTCTTAACAGCGACCTGGATGGTACTG
CTTCGGATAGCCCGAGCCTGTGGCAAGAGTCTTTGCAGACGATCACGCAG
TATAGTCTCGACTGGAGCAACTTTGAGCAGTTCCTTGGTAGCATCAATGT
GGCATAGATGGAAAAACGCTTAGCTAGCCGTCGTGTTCCTGATGAGTTGC
GGAAACGTACTTTCGCGAGCTGTGACACCTGCCGGAAGCGCCGCTGCAAA
TGTATTCGTCGCGGAGGCTCGGATCAAGACTGTGTCGCTTGCCAAAGATC
TGGCATCCCGTGCGTATCCAGCTATCAGCGAAAGACACGACTGTACGGAA
GTGTCGAGACCATCCGCGATCGGATTCACTGTCTTGAAGCAATCGTTAAG
GGGGTGTTTCCGGGTGAGCCCGTTGATAGTATTTCTGCTCTGTTAGAGCT
GGGCCGGAAAGCCGGCTATGAAATGCCCAAGCTGGACCTTCCACAACAAA
ATGAGAATGAGCGGAGAGTTGAGCTACGGAGCTCAGAAAGCGCCTATCAG
ACCCTGACGTGCGCTAGCAATAGCAACGATCAGCCAGGGTGTATCAGAAC
CAGCCAGCGCCCACCGCAGCTGGTCAAAGACAGCCGTGGCCATAGTCATT
ACATCGGGCCGTCAGCATCCCTTGCATTCTTTGCGGATCTTCGCAGCCTT
GTATCGGAGCAACAGCCTTCCTCTTGCTTCGCTGCAGATACTCTGACGGA
GTCTCTCGAAGCTCGACAAGATTCGAGTCGCTTGTCACCGTCAGCAGTGA
GTACAGGCATGACGCCACTTGCACGCGATGAAGAATTATCGTTTGTCAAG
GCACAGTTGCAGGAAATGCCCCGGGATTGTCTGCTGGCAATAATACATGC
CTTCTTTCACTCTGTAAATTCAGATTTCCCACTACTGGACAGGGGATACT
TCTTTAACAAGCTCGAGTCCTACATCTACCCCATCGGCCCCGCTGAGGGA
TTGGAAGATGGTTGGGTGGCCTGTATCCATGCTGTTCTCGCCTTTGGCTG
CTGGATCCTGGATGATGACGCTAGATTCGAAGCCGATGAACTAAGCACGC
TAAGGTCTCGCTGCTGGAACCTCGCTCGAGGAGCTTTGGCCGGCTTATTG
ACCTCGTGTACGGTCTCCAATATCCAAGCCCTGTTGCTTATGGCACTCTT
CCTGCACAACAACAATGATCGGAATGCAGCGTGGACCCTAACTGGTAGTG
CTGCGAGGATTGCTATTGCTTTGGGATTGCATCGCAGCGATATCGACGAG
AGCCTTCGCCTAACAGAACAAGACTCCAGAAGGCGAGTCTGGTCTACGCT
ATTTACATTTGAGCAATTTCTCTGCTTATGTTTGGGCCGCCCAAGTGTGA
TCGACAGTCGGGAGGTAACCCTGGGACCGGCTCCCGAAGTCTCTGCTACT
GCCCTTCTCGGTCATCCCAGCCATCACCAGGTGGCAACTGACCTTCAACA
ACAAGTCAGTCGGCTCCGCGATGCGATCGCTTTCTTGCATCGGCCTGCTT
CACCTGTATCATCCGCTGATACGCAATGTACTGATCCAATATCACTCTTG
AGTAACCTTAAAACCTGGGAAGCTGAGATACCAACTTATCTCATTATACC
ATCCGATATCTTGGATACGTGCATCACCCCCTCGACGGCAGTGCTGAAAG
CGTTCGTCCCCAGATATCCACCAGACCAACTACGGCCAACGGTTCTCCTC
CATTTAACCTATAATAATCTCCTTATTCAGCTTACACGGCCATATTTGCT
TACTGTAATTTCGATGAGCCGAAGGCAGAACCCGAAGCAGCAGTACCCTT
GGACTCTACCGAGAGATAGTTTCCAAAACGTGCAGAAGAGCGCTGAGCAC
CTGGCGTCTAGCTGCGTCACAGCAGCGATGCGCATTGTTAATCTTCTCGT
CCTGCTTGATTATGCCAATGGGGTCAATGGAAAGACTGGCCTGGACCTTT
TCTACGGGTACTCGGCTGGAATGGTTCTGCTCCTCCGTCGGCTGTGGGTC
ATGCCCCCGGATCTTCCGAAGTCTTTGTGGCAGCTTGAAGGTGCAGCTCA
GAAAGATGTTCAGTGCATGGTGACAAAGTTGCAGTCCATAATGCAAGTAA
ACGCGAAATGTCCGACAATGCAGAGATTTAATGCAGTGCTTCAAAAGTTC
GACGAAGCCGTTCTCGCGAACGGGCAACTTCGGGAGCGAGGTGAGACTGA
TGAAGTCGCACCGTTGGGCTTGGCACAGGGGGGAGGAATTGACCATGTGC
CCTCACAGCTTCGCATACCTTGCGTCGATAGTCTTAACAGCGACCTGGAT
GGTACTGCTTCGGATAGCCCGAGCCTGTGGCAAGAGTCTTTGCAGACGAT
CACGCAGTATAGTCTCGACTGGAGCAACTTTGAGCAGTTCCTTGGTAGCA
TCAATGTGGCATAGATGGAAAAACGCTTAGCTAGCCGTCGTGTTCCTGAT
GAGTTGCGGAAACGTACTTTCGCGAGCTGTGACACCTGCCGGAAGCGCCG
CTGCAAATGTATTCGTCGCGGAGGCTCGGATCAAGACTGTGTCGCTTGCC
AAAGATCTGGCATCCCGTGCGTATCCAGCTATCAGCGAAAGACACGACTG
TACGGAAGTGTCGAGACCATCCGCGATCGGATTCACTGTCTTGAAGCAAT
CGTTAAGGGGGTGTTTCCGGGTGAGCCCGTTGATAGTATTTCTGCTCTGT
TAGAGCTGGGCCGGAAAGCCGGCTATGAAATGCCCAAGCTGGACCTTCCA
CAACAAAATGAGAATGAGCGGAGAGTTGAGCTACGGAGCTCAGAAAGCGC
CTATCAGACCCTGACGTGCGCTAGCAATAGCAACGATCAGCCAGGGTGTA
TCAGAACCAGCCAGCGCCCACCGCAGCTGGTCAAAGACAGCCGTGGCCAT
AGTCATTACATCGGGCCGTCAGCATCCCTTGCATTCTTTGCGGATCTTCG
CAGCCTTGTATCGGAGCAACAGCCTTCCTCTTGCTTCGCTGCAGATACTC
TGACGGAGTCTCTCGAAGCTCGACAAGATTCGAGTCGCTTGTCACCGTCA
GCAGTGAGTACAGGCATGACGCCACTTGCACGCGATGAAGAATTATCGTT
TGTCAAGGCACAGTTGCAGGAAATGCCCCGGGATTGTCTGCTGGCAATAA
TACATGCCTTCTTTCACTCTGTAAATTCAGATTTCCCACTACTGGACAGG
GGATACTTCTTTAACAAGCTCGAGTCCTACATCTACCCCATCGGCCCCGC
TGAGGGATTGGAAGATGGTTGGGTGGCCTGTATCCATGCTGTTCTCGCCT
TTGGCTGCTGGATCCTGGATGATGACGCTAGATTCGAAGCCGATGAACTA
AGCACGCTAAGGTCTCGCTGCTGGAACCTCGCTCGAGGAGCTTTGGCCGG
CTTATTGACCTCGTGTACGGTCTCCAATATCCAAGCCCTGTTGCTTATGG
CACTCTTCCTGCACAACAACAATGATCGGAATGCAGCGTGGACCCTAACT
GGTAGTGCTGCGAGGATTGCTATTGCTTTGGGATTGCATCGCAGCGATAT
CGACGAGAGCCTTCGCCTAACAGAACAAGACTCCAGAAGGCGAGTCTGGT
CTACGCTATTTACATTTGAGCAATTTCTCTGCTTATGTTTGGGCCGCCCA
AGTGTGATCGACAGTCGGGAGGTAACCCTGGGACCGGCTCCCGAAGTCTC
TGCTACTGCCCTTCTCGGTCATCCCAGCCATCACCAGGTGGCAACTGACC
TTCAACAACAAGTCAGTCGGCTCCGCGATGCGATCGCTTTCTTGCATCGG
CCTGCTTCACCTGTATCATCCGCTGATACGCAATGTACTGATCCAATATC
ACTCTTGAGTAACCTTAAAACCTGGGAAGCTGAGATACCAACTTATCTCA
TTATACCATCCGATATCTTGGATACGTGCATCACCCCCTCGACGGCAGTG
CTGAAAGCGTTCGTCCCCAGATATCCACCAGACCAACTACGGCCAACGGT
TCTCCTCCATTTAACCTATAATAATCTCCTTATTCAGCTTACACGGCCAT
ATTTGCTTACTGTAATTTCGATGAGCCGAAGGCAGAACCCGAAGCAGCAG
TACCCTTGGACTCTACCGAGAGATAGTTTCCAAAACGTGCAGAAGAGCGC
TGAGCACCTGGCGTCTAGCTGCGTCACAGCAGCGATGCGCATTGTTAATC
TTCTCGTCCTGCTTGATTATGCCAATGGGGTCAATGGAAAGACTGGCCTG
GACCTTTTCTACGGGTACTCGGCTGGAATGGTTCTGCTCCTCCGTCGGCT
GTGGGTCATGCCCCCGGATCTTCCGAAGTCTTTGTGGCAGCTTGAAGGTG
CAGCTCAGAAAGATGTTCAGTGCATGGTGACAAAGTTGCAGTCCATAATG
CAAGTAAACGCGAAATGTCCGACAATGCAGAGATTTAATGCAGTGCTTCA
AAAGTTCGACGAAGCCGTTCTCGCGAACGGGCAACTTCGGGAGCGAGGTG
AGACTGATGAAGTCGCACCGTTGGGCTTGGCACAGGGGGGAGGAATTGAC
CATGTGCCCTCACAGCTTCGCATACCTTGCGTCGATAGTCTTAACAGCGA
CCTGGATGGTACTGCTTCGGATAGCCCGAGCCTGTGGCAAGAGTCTTTGC
AGACGATCACGCAGTATAGTCTCGACTGGAGCAACTTTGAGCAGTTCCTT
GGTAGCATCAATGTGGCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007707-T1.utr5p1 | KJC3_007707-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:3165147..3167591 + |
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