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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:234582..235966- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007833-T2 ID=KJC3_007833-T2|Name=KJC3_007833-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1385bp|location=Sequence derived from alignment at ch6:234582..235966- (Aspergillus niger KJC3)
AATCGGACTTTGCAGTCTCCAAGAGGATTTCTTGATTGACAGGCCCAGAG
GCCTTTTGACACGACCATCTATAGTTACAACATTGAGAACATGTCATCGT
CAGGACACGGCCAGCATGTTCTTTTAACCGGGGCAAACGGTTTTGTCGCA
TCGCATATCCTCTCTATCTTGCTGGATGTAGGTGACTACTCTCTAACGAG
ACGTGCAGGATCTGACAGGCTCAGCGTGGCTACACGGTGACCGCGACAGT
GCGATCTCAAGCAAAAGCGGACGAAGTGGTTAAGGCTCACCCTGATTGGA
AAGGGAAGATTGAATTTGCGATCGTGTCGGATTTCACCTCCCAAAAACCG
TTTAACACCTTGTTCGAAGAGAACAAAATTGCCTTCGATTATGTCATTCA
TACGGCATCCCCATTGAAGTTTGACATTAAGGATATCCAGAAAGAAATGA
TTGAACCGGCTGTCAAGGGGTAAGCCAATAGTGTCTTCGCAACCGTGTTA
TAACCACTAAAATACACCTCCAGCACGACTCAAATTCTGGAAAGCGCTCA
CCAACACGGTGGAAGCGCGCTCAAACGCTTCATCCTTTTAGGCAGCGCGG
TCTCAGTCCTGGATTCCTTCGAAGACATGAGTCGAGAAGGACGCCCATAC
ACCGAGAAAAGTTGGAATCCAGTTCGTCGTTCAAGAACCTGAAACCGGCA
AGACACACGCTAATGGAAGTCTAGGTAACTGCGCAACAGGCAATCGAGCG
TAATGACACAGTGCTGGGCTATAACGTTTCTAAGACCCAAGCCGAGCGCA
AAGCCTGGGAATTTATGCAGGCAAATAATCCCAACTTTGACCTCACAGTT
ATTAATCCCGATATTATCACTGGACCCATGATCCATCCAATCACCGGGAA
GGGGTCGATCAATGAAACTAATCATTTTGCCATTGCGAGCTTCATCGACG
GGACTAATTCCAAGGTTGAGGACGTACGGTTTCCATTCTATCACTTTGTC
GACGTGCGCGACGTGGCAAGGAGCCATGTGGATGCACTTTCTAATCCCGC
TGCCGGAGGGCAGCGTATCCTGCTGATCTCGGGGCTTATTACACCGCAGC
TAGTAGTCAATATCATCCGAAAGCATTTTTCAGAACTACGCGAAAAGGTT
CCGGTCGGTATACCGGATAGGGTACTGCCTGAGGGGGTGCATCCTACCGG
GTGGGATATGCGAGTTAGCTTAGACGTGCTCTCCAAGGGAAAGGGCAGTC
AGTGGCAGTATATTGGCTTGGAGGAGAGTGTGAAGGATGCAGTGCAGTCT
ATGCTTCAGCACAACGTGTTGCCTGTATAATGTAACGCAATTTTGTACTT
ACATGTCAATTTGACAGAGACATTAGTGAATTGTA back to topCoding sequence (CDS) from alignment at ch6:234582..235966- >KJC3_007833-T2 ID=KJC3_007833-T2|Name=KJC3_007833-T2|organism=Aspergillus niger KJC3|type=CDS|length=2331bp|location=Sequence derived from alignment at ch6:234582..235966- (Aspergillus niger KJC3)
GTAACTGCGCAACAGGCAATCGAGCGTAATGACACAGTGCTGGGCTATAA
CGTTTCTAAGACCCAAGCCGAGCGCAAAGCCTGGGAATTTATGCAGGCAA
ATAATCCCAACTTTGACCTCACAGTTATTAATCCCGATATTATCACTGGA
CCCATGATCCATCCAATCACCGGGAAGGGGTCGATCAATGAAACTAATCA
TTTTGCCATTGCGAGCTTCATCGACGGGACTAATTCCAAGGTTGAGGACG
TACGGTTTCCATTCTATCACTTTGTCGACGTGCGCGACGTGGCAAGGAGC
CATGTGGATGCACTTTCTAATCCCGCTGCCGGAGGGCAGCGTATCCTGCT
GATCTCGGGGCTTATTACACCGCAGCTAGTAGTCAATATCATCCGAAAGC
ATTTTTCAGAACTACGCGAAAAGGTTCCGGTCGGTATACCGGATAGGGTA
CTGCCTGAGGGGGTGCATCCTACCGGGTGGGATATGCGAGTTAGCTTAGA
CGTGCTCTCCAAGGGAAAGGGCAGTCAGTGGCAGTATATTGGCTTGGAGG
AGAGTGTGAAGGATGCAGTGCAGTCTATGCTTCAGCACAACGTGTTGCCT
GTATAACACGACTCAAATTCTGGAAAGCGCTCACCAACACGGTGGAAGCG
CGCTCAAACGCTTCATCCTTTTAGGCAGCGCGGTCTCAGTCCTGGATTCC
TTCGAAGACATGAGTCGAGAAGGACGCCCATACACCGAGAAAAGTTGGAA
TCCAATGATTGAACCGGCTGTCAAGGGGTAACTGCGCAACAGGCAATCGA
GCGTAATGACACAGTGCTGGGCTATAACGTTTCTAAGACCCAAGCCGAGC
GCAAAGCCTGGGAATTTATGCAGGCAAATAATCCCAACTTTGACCTCACA
GTTATTAATCCCGATATTATCACTGGACCCATGATCCATCCAATCACCGG
GAAGGGGTCGATCAATGAAACTAATCATTTTGCCATTGCGAGCTTCATCG
ACGGGACTAATTCCAAGGTTGAGGACGTACGGTTTCCATTCTATCACTTT
GTCGACGTGCGCGACGTGGCAAGGAGCCATGTGGATGCACTTTCTAATCC
CGCTGCCGGAGGGCAGCGTATCCTGCTGATCTCGGGGCTTATTACACCGC
AGCTAGTAGTCAATATCATCCGAAAGCATTTTTCAGAACTACGCGAAAAG
GTTCCGGTCGGTATACCGGATAGGGTACTGCCTGAGGGGGTGCATCCTAC
CGGGTGGGATATGCGAGTTAGCTTAGACGTGCTCTCCAAGGGAAAGGGCA
GTCAGTGGCAGTATATTGGCTTGGAGGAGAGTGTGAAGGATGCAGTGCAG
TCTATGCTTCAGCACAACGTGTTGCCTGTATAACACGACTCAAATTCTGG
AAAGCGCTCACCAACACGGTGGAAGCGCGCTCAAACGCTTCATCCTTTTA
GGCAGCGCGGTCTCAGTCCTGGATTCCTTCGAAGACATGAGTCGAGAAGG
ACGCCCATACACCGAGAAAAGTTGGAATCCAATGATTGAACCGGCTGTCA
AGGGGTAACTGCGCAACAGGCAATCGAGCGTAATGACACAGTGCTGGGCT
ATAACGTTTCTAAGACCCAAGCCGAGCGCAAAGCCTGGGAATTTATGCAG
GCAAATAATCCCAACTTTGACCTCACAGTTATTAATCCCGATATTATCAC
TGGACCCATGATCCATCCAATCACCGGGAAGGGGTCGATCAATGAAACTA
ATCATTTTGCCATTGCGAGCTTCATCGACGGGACTAATTCCAAGGTTGAG
GACGTACGGTTTCCATTCTATCACTTTGTCGACGTGCGCGACGTGGCAAG
GAGCCATGTGGATGCACTTTCTAATCCCGCTGCCGGAGGGCAGCGTATCC
TGCTGATCTCGGGGCTTATTACACCGCAGCTAGTAGTCAATATCATCCGA
AAGCATTTTTCAGAACTACGCGAAAAGGTTCCGGTCGGTATACCGGATAG
GGTACTGCCTGAGGGGGTGCATCCTACCGGGTGGGATATGCGAGTTAGCT
TAGACGTGCTCTCCAAGGGAAAGGGCAGTCAGTGGCAGTATATTGGCTTG
GAGGAGAGTGTGAAGGATGCAGTGCAGTCTATGCTTCAGCACAACGTGTT
GCCTGTATAACACGACTCAAATTCTGGAAAGCGCTCACCAACACGGTGGA
AGCGCGCTCAAACGCTTCATCCTTTTAGGCAGCGCGGTCTCAGTCCTGGA
TTCCTTCGAAGACATGAGTCGAGAAGGACGCCCATACACCGAGAAAAGTT
GGAATCCAATGATTGAACCGGCTGTCAAGGG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007833-T2.utr3p1 | KJC3_007833-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007833-T2.utr5p1 | KJC3_007833-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_6.4 |
| DBxref | InterPro:IPR036291 |
| Product | variant 2 |
| Product | putative secondary metabolism biosynthetic enzyme |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:234582..235966 - |
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