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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:244783..246233+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007838-T1 ID=KJC3_007838-T1|Name=KJC3_007838-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1451bp|location=Sequence derived from alignment at ch6:244783..246233+ (Aspergillus niger KJC3)
CTGAATAGTGCGTCAAAAAGAGCTTGAGCAAAGGAGGACTGCACTTTCCA
AGCCGAAGTGGGGGGGGGATAACCAAGCAGCCCACTTTTATCCGAAACCT
TTCAGGTGTCATCTAATTTGGATAAATCCGGATTGTTCTTCGGCATATGT
GGATGTCACCATGAGCCATAAATACAAATATCTGGACAAGCTGTTGCCCT
TTGTTCAAGTTATTCGTTCTCTGTGGACCACGATCCCAACCATTGATCTC
TTTTGTTTGTTCCTCAGCGGATAAAGTCATACGAAAATGAAATTCCTCAA
AGCCAAGGGTAGCTTGCTGTCGTCTGGCATATACCTCATTGCATTGGCCC
CCTTTGTCAACGCAAAATGCGCTCTTCCGTCGACATATAGTTGGACTTCG
ACCGATGCTCTCGCCACCCCAAAGTCCGGATGGACTGCACTCAAGGACTT
CACCGATGTCGTCTCTAACGGCAAACATATTGTCTATGCGTCCACTACCG
ACACACAGGGAAATTACGGCTCCATGGGCTTTGGCGCCTTTTCGGACTGG
TCGGACATGGCATCCGCTAGTCAAACGGCCACAAGCTTCAGCGCCGTAGC
TCCAACCTTGTTCTACTTCCAGCCAAAGAGTATCTGGGTTCTGGCCTACC
AATGGGGCTCCAGCACTTTCACCTACCGCACCTCTCAAGATCCCACCAAT
GTCAACGGCTGGTCATCCGAGCAAGCTCTTTTCACGGGCAAAATCAGCGG
CTCAAGTACCGGTGCCATTGATCAGACTGTGATTGGTGATGATACGAATA
TGTATCTTTTCTTTGCCGGCGACAATGGCAAGATCTACCGATCCAGCATG
TCTATCAATGACTTCCCCGGAAGCTTCGGCAGCCAGTACGAGGAGATCCT
CAGCGGCGCGACCAACGATTTGTTCGAGGCGGTCCAAGTGTACACCGTCG
ACGGCGGCGAGGGTGACAGCAAGTACCTCATGATCGTCGAGGCGATCGGT
TCCACCGGACATCGTTATTTCCGCTCCTTCACGGCCAGCAGTCTCGGCGG
AGAGTGGACAGCCCAGGCGGCAAGTGAAGATCAACCCTTCGCGGGCAAAG
CCAACAGTGGCGCCACCTGGACCGACGACATCAGTCATGGTGACTTGGTT
CGCAACAACCCTGATCAAACCATGACGGTCGATCCTTGCAACCTCCAGCT
TCTCTACCAGGGCCATGACCCCAACAGCAATAGTGACTACAACCTCTTGC
CCTGGAAGCCAGGAGTTCTTACCTTGAAGCAGTGAAAGGCTTATCATTTG
GTTGCAGACCGGGGTTTTCTTCCCCTTCCTTGAGTAGTATTGTTGGTGGA
AGACAGCGGGATGGGGAGTGAATACTATCTTGGGCTCAATTGAGGTGGAA
TCCTGTCAGACTGTGTACATAGGCTACATGCGAATGATTTGGTTTATTCA
C back to topCoding sequence (CDS) from alignment at ch6:244783..246233+ >KJC3_007838-T1 ID=KJC3_007838-T1|Name=KJC3_007838-T1|organism=Aspergillus niger KJC3|type=CDS|length=999bp|location=Sequence derived from alignment at ch6:244783..246233+ (Aspergillus niger KJC3)
ATGAAATTCCTCAAAGCCAAGGGTAGCTTGCTGTCGTCTGGCATATACCT
CATTGCATTGGCCCCCTTTGTCAACGCAAAATGCGCTCTTCCGTCGACAT
ATAGTTGGACTTCGACCGATGCTCTCGCCACCCCAAAGTCCGGATGGACT
GCACTCAAGGACTTCACCGATGTCGTCTCTAACGGCAAACATATTGTCTA
TGCGTCCACTACCGACACACAGGGAAATTACGGCTCCATGGGCTTTGGCG
CCTTTTCGGACTGGTCGGACATGGCATCCGCTAGTCAAACGGCCACAAGC
TTCAGCGCCGTAGCTCCAACCTTGTTCTACTTCCAGCCAAAGAGTATCTG
GGTTCTGGCCTACCAATGGGGCTCCAGCACTTTCACCTACCGCACCTCTC
AAGATCCCACCAATGTCAACGGCTGGTCATCCGAGCAAGCTCTTTTCACG
GGCAAAATCAGCGGCTCAAGTACCGGTGCCATTGATCAGACTGTGATTGG
TGATGATACGAATATGTATCTTTTCTTTGCCGGCGACAATGGCAAGATCT
ACCGATCCAGCATGTCTATCAATGACTTCCCCGGAAGCTTCGGCAGCCAG
TACGAGGAGATCCTCAGCGGCGCGACCAACGATTTGTTCGAGGCGGTCCA
AGTGTACACCGTCGACGGCGGCGAGGGTGACAGCAAGTACCTCATGATCG
TCGAGGCGATCGGTTCCACCGGACATCGTTATTTCCGCTCCTTCACGGCC
AGCAGTCTCGGCGGAGAGTGGACAGCCCAGGCGGCAAGTGAAGATCAACC
CTTCGCGGGCAAAGCCAACAGTGGCGCCACCTGGACCGACGACATCAGTC
ATGGTGACTTGGTTCGCAACAACCCTGATCAAACCATGACGGTCGATCCT
TGCAACCTCCAGCTTCTCTACCAGGGCCATGACCCCAACAGCAATAGTGA
CTACAACCTCTTGCCCTGGAAGCCAGGAGTTCTTACCTTGAAGCAGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0046373 | L-arabinose metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046556 | alpha-L-arabinofuranosidase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007838-T1.utr5p1 | KJC3_007838-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007838-T1.utr3p1 | KJC3_007838-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | CAZy:GH62 |
| DBxref | InterPro:IPR023296 |
| DBxref | InterPro:IPR005193 |
| DBxref | PFAM:PF03664 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:244783..246233 + |
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