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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:312185..313173+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007866-T1 ID=KJC3_007866-T1|Name=KJC3_007866-T1|organism=Aspergillus niger KJC3|type=mRNA|length=989bp|location=Sequence derived from alignment at ch6:312185..313173+ (Aspergillus niger KJC3)
CTAGCCTATAACTTCCCCATCCTAAAAAAATCCTAGTTTAACATCATTCA
GTATCACGCGCCCTTCAATTCCTTACAATCAATTGGCCATTTGGCTGAGT
TACTGCTCCCGAGCGACACGGATAAATAGGAGTTACTGCAACCATCACAA
TGGGACAAAAGGCCTCGGTCCCTCAACCAGGGGCTAAGCTCCAGGTCATA
GGTGCAGGTCTCTCTCGCACCGGTACGGCATCTTTCAGCGCCGCCTTAAA
CATTCTCCTCGACGGACCTGTCTACCATGGGGGTACGCAGATAACAATGG
GCCCATCAACCGAGATCAAATCATGGATCACTATTCTACGCAATTGGTTA
TCAGGAAAGAACCATCAGAATATTCTTGCCATGATGAAAGACCGCACAGA
TGGCTACGTTGCTATCACCGACGCGCCTGGCTCTCAGTTCGTACCAGAGC
TCCTGGAGATTTACCCCGAAAGCAAAGTCATCTGTACAGTCCGCGACGCT
GATGCATGGGTCAAGAGTATGACCCAGATTCAGGGATTGGCTACACTGTG
GTTTCTACGCGCCGTTCTTCTCCCACTGCCTGGAATGCGGCACTTTGTTG
ACTATATCTCGCTCCTGCAAGCGCAGTGGGATAAGGTGTATGACGACGAG
CGTGCCTTTGATATCATTTATGATCGACACATTGAGTGGTTGAAGGAGAT
AGTGCCCGAGGATCGACTGGTATTCTATGATGTCCGGGAAGGATGGGAGC
CTCTTTGCAAGGCATTAGGGAAGGATATACCCGATGTTCCATTCCCACGG
ATCAACGACTCCAAGGCTATTGATCGGGTTGCGCAGTACCATATTAAGCG
TGGGCTACTGAGATGGGCAGCAGGCTTTACGTTGGCAGGTGCCGCTACTG
CATGGCTAATGCGCGGGTGAAAAACTAATATTGATACTCGAGGTTATGCT
GTAATTAGTTGACTGTGGACATGCATATAAACTAAGCTC back to topCoding sequence (CDS) from alignment at ch6:312185..313173+ >KJC3_007866-T1 ID=KJC3_007866-T1|Name=KJC3_007866-T1|organism=Aspergillus niger KJC3|type=CDS|length=771bp|location=Sequence derived from alignment at ch6:312185..313173+ (Aspergillus niger KJC3)
ATGGGACAAAAGGCCTCGGTCCCTCAACCAGGGGCTAAGCTCCAGGTCAT
AGGTGCAGGTCTCTCTCGCACCGGTACGGCATCTTTCAGCGCCGCCTTAA
ACATTCTCCTCGACGGACCTGTCTACCATGGGGGTACGCAGATAACAATG
GGCCCATCAACCGAGATCAAATCATGGATCACTATTCTACGCAATTGGTT
ATCAGGAAAGAACCATCAGAATATTCTTGCCATGATGAAAGACCGCACAG
ATGGCTACGTTGCTATCACCGACGCGCCTGGCTCTCAGTTCGTACCAGAG
CTCCTGGAGATTTACCCCGAAAGCAAAGTCATCTGTACAGTCCGCGACGC
TGATGCATGGGTCAAGAGTATGACCCAGATTCAGGGATTGGCTACACTGT
GGTTTCTACGCGCCGTTCTTCTCCCACTGCCTGGAATGCGGCACTTTGTT
GACTATATCTCGCTCCTGCAAGCGCAGTGGGATAAGGTGTATGACGACGA
GCGTGCCTTTGATATCATTTATGATCGACACATTGAGTGGTTGAAGGAGA
TAGTGCCCGAGGATCGACTGGTATTCTATGATGTCCGGGAAGGATGGGAG
CCTCTTTGCAAGGCATTAGGGAAGGATATACCCGATGTTCCATTCCCACG
GATCAACGACTCCAAGGCTATTGATCGGGTTGCGCAGTACCATATTAAGC
GTGGGCTACTGAGATGGGCAGCAGGCTTTACGTTGGCAGGTGCCGCTACT
GCATGGCTAATGCGCGGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007866-T1.utr5p1 | KJC3_007866-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007866-T1.utr3p1 | KJC3_007866-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR040632 |
| DBxref | PFAM:PF17784 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:312185..313173 + |
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