You are here

Home

KJC3_007896-T1, KJC3_007896-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007896-T1
Unique NameKJC3_007896-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:387574..389144+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007896-T1 ID=KJC3_007896-T1|Name=KJC3_007896-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1571bp|location=Sequence derived from alignment at ch6:387574..389144+ (Aspergillus niger KJC3)
ATGTTTGGCTTCGACATCGAATTCCGCCGTCACCGGTGGGCCTTGATCTA
CTGTTCCATCTCCGCCATCGGCGCCCTGGTATTTGGCTATGACAACACAT
ACTACAGCGGGATTCTAGGCATGCAAGAGTTCAAGAATGACTACGGCGAC
CATTACGAGGATGGGGCGAAAGCATTGGCGACGAGCTTTACTTCGCTGAC
TACCTCAAGCATCTACATCGGAGATATGCTCGGTGCACTAATTGCAGGGC
CCCTCAATGATCGCTTTGGTCGGAAAACGGTCCTCTGGATTGCTTCGGCG
TTTGTGCTCGCAGGGGGTGTGACCCAGGTCGCTGACACGAACATTGAGGG
TGTTATTGTACTTGGCCGCATTCTGATCGGGCTTGGAGTGGGCAACTTTA
CGGTTACGTCGCTACTCTAGTGAGTACTGTTGTGTCGGTTCTACACAAAT
GTAACATCCCATTGATCATCCATAGTATCGGAGAAATCGCACCAATGGAA
ATACGAAGTCCGGCACTGTACATGTACCAATTCCTGCAGTCCTGCTCGCA
GCTCGTCGCTTCCGGCCTCACCCAAGGCACCAATTCCATCCACTCGTCTC
TATCTTACAAACTCCCAATGGGCGGACTCGTCATCCTGCCCCTCTTCATG
CTCTTCCTCTTACCCTTCATCCCCGAAAGCCCAACCTGGTACGTCTTCCA
CAACAGACTGGAGGACGCCCGACGCTCCCTCCTCAAAATCAACCGCAACG
ACCGCACCTACGACCCCACAGCTGATCTAGCCTTCCTCACGCAAGCCCGA
CGCTACGAAGAAGCCCAAGGCGAAGAATCTTCCTGGCTTTCCCTCCTCCT
CGACCCCATCGAACGGAAAAAGCTAATATGGGCCTCGGGCGGCATGTACG
CCCAACAAATCTGCGGCATCATATTCTTCTACAACTACGGCGTCGTGTTT
GCTGAAGCTCTCGGCGTGTCCCAGCCCTTTACAATCACCCTCATCACCAT
GATCCTACAGATCTTCGCTGTCGCCGCATCTATCCTCACAGGAAACCGTC
TCCGCCGCCGCACCAACCTCCTCGCCAGCACCAGCCTCATCCTGGTCGCC
TTCATCATCATCGGCGGTCTCGGCACCCAATCCACTCTCACCACAGCATC
TAAATACATCATTGTCGTCTTCTCCTATGTCGTCATCTGCGCCTACAACT
TCGGTCTCGGCCCACTCACCTACGCCGTGTCCCGCGAAATCTCGGTCGGC
GTGAACCAGAATAAGATCATGTCGGTGTCCATCGTGGCGCTGTATTTCTT
CCTTTGGGTGATCTCCTTCACCGCGCCGTATCTGTATTATGATGCCGGCC
TGGGTCCAATGGTCGGGTTCGTGTATGCGGGTACTACGCTGACGTCGCTG
ATCTGGGTGTGGTTTTGTGTGGGTGAGACGCAGGGACGAACGAGGTTGGA
GGTCGCTATGTTTTTTACAGAGAGGGTACCGGCGCGGAGGTGGAGGACGC
ATGTTTTCGCGGGGAGCGGAGGGGATGAGAAGGACGATGTGAGGGCGGAG
CATGTGGAAAATAAGGCTTAG
back to top

Coding sequence (CDS) from alignment at ch6:387574..389144+

>KJC3_007896-T1 ID=KJC3_007896-T1|Name=KJC3_007896-T1|organism=Aspergillus niger KJC3|type=CDS|length=3030bp|location=Sequence derived from alignment at ch6:387574..389144+ (Aspergillus niger KJC3)
ATGTTTGGCTTCGACATCGAATTCCGCCGTCACCGGTGGGCCTTGATCTA
CTGTTCCATCTCCGCCATCGGCGCCCTGGTATTTGGCTATGACAACACAT
ACTACAGCGGGATTCTAGGCATGCAAGAGTTCAAGAATGACTACGGCGAC
CATTACGAGGATGGGGCGAAAGCATTGGCGACGAGCTTTACTTCGCTGAC
TACCTCAAGCATCTACATCGGAGATATGCTCGGTGCACTAATTGCAGGGC
CCCTCAATGATCGCTTTGGTCGGAAAACGGTCCTCTGGATTGCTTCGGCG
TTTGTGCTCGCAGGGGGTGTGACCCAGGTCGCTGACACGAACATTGAGGG
TGTTATTGTACTTGGCCGCATTCTGATCGGGCTTGGAGTGGGCAACTTTA
CGGTTACGTCGCTACTCTATATCGGAGAAATCGCACCAATGGAAATACGA
AGTCCGGCACTGTACATGTACCAATTCCTGCAGTCCTGCTCGCAGCTCGT
CGCTTCCGGCCTCACCCAAGGCACCAATTCCATCCACTCGTCTCTATCTT
ACAAACTCCCAATGGGCGGACTCGTCATCCTGCCCCTCTTCATGCTCTTC
CTCTTACCCTTCATCCCCGAAAGCCCAACCTGGTACGTCTTCCACAACAG
ACTGGAGGACGCCCGACGCTCCCTCCTCAAAATCAACCGCAACGACCGCA
CCTACGACCCCACAGCTGATCTAGCCTTCCTCACGCAAGCCCGACGCTAC
GAAGAAGCCCAAGGCGAAGAATCTTCCTGGCTTTCCCTCCTCCTCGACCC
CATCGAACGGAAAAAGCTAATATGGGCCTCGGGCGGCATGTACGCCCAAC
AAATCTGCGGCATCATATTCTTCTACAACTACGGCGTCGTGTTTGCTGAA
GCTCTCGGCGTGTCCCAGCCCTTTACAATCACCCTCATCACCATGATCCT
ACAGATCTTCGCTGTCGCCGCATCTATCCTCACAGGAAACCGTCTCCGCC
GCCGCACCAACCTCCTCGCCAGCACCAGCCTCATCCTGGTCGCCTTCATC
ATCATCGGCGGTCTCGGCACCCAATCCACTCTCACCACAGCATCTAAATA
CATCATTGTCGTCTTCTCCTATGTCGTCATCTGCGCCTACAACTTCGGTC
TCGGCCCACTCACCTACGCCGTGTCCCGCGAAATCTCGGTCGGCGTGAAC
CAGAATAAGATCATGTCGGTGTCCATCGTGGCGCTGTATTTCTTCCTTTG
GGTGATCTCCTTCACCGCGCCGTATCTGTATTATGATGCCGGCCTGGGTC
CAATGGTCGGGTTCGTGTATGCGGGTACTACGCTGACGTCGCTGATCTGG
GTGTGGTTTTGTGTGGGTGAGACGCAGGGACGAACGAGGTTGGAGGTCGC
TATGTTTTTTACAGAGAGGGTACCGGCGCGGAGGTGGAGGACGCATGTTT
TCGCGGGGAGCGGAGGGGATGAGAAGGACGATGTGAGGGCGGAGCATGTG
GAAAATAAGGCTTAGATGTTTGGCTTCGACATCGAATTCCGCCGTCACCG
GTGGGCCTTGATCTACTGTTCCATCTCCGCCATCGGCGCCCTGGTATTTG
GCTATGACAACACATACTACAGCGGGATTCTAGGCATGCAAGAGTTCAAG
AATGACTACGGCGACCATTACGAGGATGGGGCGAAAGCATTGGCGACGAG
CTTTACTTCGCTGACTACCTCAAGCATCTACATCGGAGATATGCTCGGTG
CACTAATTGCAGGGCCCCTCAATGATCGCTTTGGTCGGAAAACGGTCCTC
TGGATTGCTTCGGCGTTTGTGCTCGCAGGGGGTGTGACCCAGGTCGCTGA
CACGAACATTGAGGGTGTTATTGTACTTGGCCGCATTCTGATCGGGCTTG
GAGTGGGCAACTTTACGGTTACGTCGCTACTCTATATCGGAGAAATCGCA
CCAATGGAAATACGAAGTCCGGCACTGTACATGTACCAATTCCTGCAGTC
CTGCTCGCAGCTCGTCGCTTCCGGCCTCACCCAAGGCACCAATTCCATCC
ACTCGTCTCTATCTTACAAACTCCCAATGGGCGGACTCGTCATCCTGCCC
CTCTTCATGCTCTTCCTCTTACCCTTCATCCCCGAAAGCCCAACCTGGTA
CGTCTTCCACAACAGACTGGAGGACGCCCGACGCTCCCTCCTCAAAATCA
ACCGCAACGACCGCACCTACGACCCCACAGCTGATCTAGCCTTCCTCACG
CAAGCCCGACGCTACGAAGAAGCCCAAGGCGAAGAATCTTCCTGGCTTTC
CCTCCTCCTCGACCCCATCGAACGGAAAAAGCTAATATGGGCCTCGGGCG
GCATGTACGCCCAACAAATCTGCGGCATCATATTCTTCTACAACTACGGC
GTCGTGTTTGCTGAAGCTCTCGGCGTGTCCCAGCCCTTTACAATCACCCT
CATCACCATGATCCTACAGATCTTCGCTGTCGCCGCATCTATCCTCACAG
GAAACCGTCTCCGCCGCCGCACCAACCTCCTCGCCAGCACCAGCCTCATC
CTGGTCGCCTTCATCATCATCGGCGGTCTCGGCACCCAATCCACTCTCAC
CACAGCATCTAAATACATCATTGTCGTCTTCTCCTATGTCGTCATCTGCG
CCTACAACTTCGGTCTCGGCCCACTCACCTACGCCGTGTCCCGCGAAATC
TCGGTCGGCGTGAACCAGAATAAGATCATGTCGGTGTCCATCGTGGCGCT
GTATTTCTTCCTTTGGGTGATCTCCTTCACCGCGCCGTATCTGTATTATG
ATGCCGGCCTGGGTCCAATGGTCGGGTTCGTGTATGCGGGTACTACGCTG
ACGTCGCTGATCTGGGTGTGGTTTTGTGTGGGTGAGACGCAGGGACGAAC
GAGGTTGGAGGTCGCTATGTTTTTTACAGAGAGGGTACCGGCGCGGAGGT
GGAGGACGCATGTTTTCGCGGGGAGCGGAGGGGATGAGAAGGACGATGTG
AGGGCGGAGCATGTGGAAAATAAGGCTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_007896KJC3_007896Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007896-T1.exon1KJC3_007896-T1.exon1Aspergillus niger KJC3exon
KJC3_007896-T1.exon2KJC3_007896-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007896-T1.cdsKJC3_007896-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007896-T1KJC3_007896-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR020846
DBxrefInterPro:IPR005829
DBxrefInterPro:IPR005828
DBxrefInterPro:IPR003663
DBxrefPFAM:PF00083
DBxrefPFAM:PF07690
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:387574..389144 +
Powered by Drupal