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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:475551..476990+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007933-T1 ID=KJC3_007933-T1|Name=KJC3_007933-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1440bp|location=Sequence derived from alignment at ch6:475551..476990+ (Aspergillus niger KJC3)
ACATCGCCTCGCAAACAAGTGGGGGTCCAATATGAATGTCATTTTGAGTA
TGGCCGACTATAATCAGTCCACATTCCATGACCCATTCGGGGCCTAGTTG
GACTCGGAGAGAGAAAGTCTCTGGTTCATTGATGTCATCAGGTATAACCC
TTGCCATATCCCTGAGAAGGAAAGCATATTAATACTGCGCGGTGACCTCC
CTCACTTATCTAGCATCAACAGTTTGACAGCATCAACTATCCACTCATAT
CATCCACTCCCACCCTAACACCAGAATAATGGCTTCCAAATACGCTGCAG
CCCACAAATCCCCCCAAGGACCCGGTGACGCCCGTCCTACCGCCTCCCAA
ATCATCAAAGATCAAAACCTCGAAGACAAGCTCTCCGACAAGACCATCCT
GATCACGGGCTGCTCCTCGGGACTAGGTGTCGAGACCGCGCGCGCACTCC
ACCTCACCGGCGCAACCCTCTACCTAACCGTCCGCGATGTCAAAAAAGCA
GAGGCCAACCTTGGTGACCTGGCCAACAGTCCCCGAGTTCATTTCCTCCA
CTTAGACCTGAACTCGCTTGACTCCGTGCGCGCCTGCGCCGAAGACTTCA
ACTCCAAGAGCAAAAAGCTTAACATTCTAATTGAAAACGCCGGCGTCATG
GCCTGCCCGGAAGGCCGGACAGCAGATGGCTTCGAGACTCAAATCGGAAG
CAACCACCTCGCGCACTTCCTTCTCTTTATCCTTCTGAAACCTACCCTCT
TGGCTTCATCAACACCCGAATTCAACTCCCGTGTTGTGATACTTTCCTCC
GCCGCTCACAGAATTTCAAGCGTCCACCTCGACAACATCAGTCTCGAGGG
TGAATACGAGCCGTGGAAGGCATATGGCCAGAGCAAGACCGCTGGGATCT
GGGCTGCTAATGAGATCGAAAGACGGTATGGTGCTCAGGGCCTCCATGCT
TTCAGTTTGCATCCGGGTGGCATCAATACGGATCTCCAGCGTCATATTTC
GCAGGAGCAGCAGGCCGCATGGGGTCAAGATGAAGCACTGATGAAGACCT
TTAAGAGTCCGGAACAGGGCGCTGCTACGACTGTGCTGGCGGCTGTGGCC
AAAGAGCTCGAGGGCCAGGGAGGGAAGTACTTGGACAATTGTCAGATTGC
TGAGCCATATGACCCGAGTAGTGGCACCTGGGGTCCGGGGTACGCTGCTT
GGGCGTATGATGTGGACGGAGAGAGGAAGTTCTGGAAACTGAGTTTGGAG
CTGCTCGGTCTGAAGGATGAGTAGATCTATCAGTGGTCTTCACTCTTTTC
TGTGTGATGAGAGGTGTGAATCATGTATTATTGTATAGAGGTGGCCAGAC
TAGGGTATGACAGTGGAAGCATGATTTCTTAGTTCGCCATACTAGCTCTT
ATAGAAGTAGGGTGGTTAGCAATGCAACACCGGAAGAGGA back to topCoding sequence (CDS) from alignment at ch6:475551..476990+ >KJC3_007933-T1 ID=KJC3_007933-T1|Name=KJC3_007933-T1|organism=Aspergillus niger KJC3|type=CDS|length=996bp|location=Sequence derived from alignment at ch6:475551..476990+ (Aspergillus niger KJC3)
ATGGCTTCCAAATACGCTGCAGCCCACAAATCCCCCCAAGGACCCGGTGA
CGCCCGTCCTACCGCCTCCCAAATCATCAAAGATCAAAACCTCGAAGACA
AGCTCTCCGACAAGACCATCCTGATCACGGGCTGCTCCTCGGGACTAGGT
GTCGAGACCGCGCGCGCACTCCACCTCACCGGCGCAACCCTCTACCTAAC
CGTCCGCGATGTCAAAAAAGCAGAGGCCAACCTTGGTGACCTGGCCAACA
GTCCCCGAGTTCATTTCCTCCACTTAGACCTGAACTCGCTTGACTCCGTG
CGCGCCTGCGCCGAAGACTTCAACTCCAAGAGCAAAAAGCTTAACATTCT
AATTGAAAACGCCGGCGTCATGGCCTGCCCGGAAGGCCGGACAGCAGATG
GCTTCGAGACTCAAATCGGAAGCAACCACCTCGCGCACTTCCTTCTCTTT
ATCCTTCTGAAACCTACCCTCTTGGCTTCATCAACACCCGAATTCAACTC
CCGTGTTGTGATACTTTCCTCCGCCGCTCACAGAATTTCAAGCGTCCACC
TCGACAACATCAGTCTCGAGGGTGAATACGAGCCGTGGAAGGCATATGGC
CAGAGCAAGACCGCTGGGATCTGGGCTGCTAATGAGATCGAAAGACGGTA
TGGTGCTCAGGGCCTCCATGCTTTCAGTTTGCATCCGGGTGGCATCAATA
CGGATCTCCAGCGTCATATTTCGCAGGAGCAGCAGGCCGCATGGGGTCAA
GATGAAGCACTGATGAAGACCTTTAAGAGTCCGGAACAGGGCGCTGCTAC
GACTGTGCTGGCGGCTGTGGCCAAAGAGCTCGAGGGCCAGGGAGGGAAGT
ACTTGGACAATTGTCAGATTGCTGAGCCATATGACCCGAGTAGTGGCACC
TGGGGTCCGGGGTACGCTGCTTGGGCGTATGATGTGGACGGAGAGAGGAA
GTTCTGGAAACTGAGTTTGGAGCTGCTCGGTCTGAAGGATGAGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007933-T1.utr5p1 | KJC3_007933-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007933-T1.utr3p1 | KJC3_007933-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:475551..476990 + |
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