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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:495633..497076+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007943-T1 ID=KJC3_007943-T1|Name=KJC3_007943-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1444bp|location=Sequence derived from alignment at ch6:495633..497076+ (Aspergillus niger KJC3)
TTGAATAATCCAAAAAGAGAGGCATTTGATACTCTGACATGTCAGCAGTC
ATTTCATTACTCAATATGCCCGAAGGTGGTGAGGATTGAAGATAAGTAGG
GATGGTTCTGCTTATCGCACTCGGATCTCGGCCTATCTCCATCTGCAAGG
CGCACGGCCTTACATGCAACGCCAAGGAGGGGCACCATCCCCTCTTATAA
AACCTCCCTCTACCCCTTCTCGGTATATTGACTAACTCATCATTTACCCC
TCCGCTACTTACCTCCCTCTTCAAAGGCACATCATGTATACTCCCCGAAT
CGGTGACCGGCTCTCGAGCCTCGACACCCCCTCAATGATCGTCGATCTCG
ACTTAATGGAATCCAACATCCAGAAACTCTTCTCCGCCCTCCTTCCCACA
GGCTTAAACATCCGCCCGCACCTCAAAACCACCAAGTGCGCCGCCCTAGC
AAAGAAGCTCGTCGCCGCGGGCGCCAAAGGCTGCTGTGTTGCGAAGGTCT
CAGAAGCTGAAGCCATTACGGCAGCCGGGTTCGACGATATCCTAATAACG
TGCGAGATTATCGGCGCGCCGAAGGTCCAGCGACTCGTTGAACTGGTTAG
GAAACACCCCGGGCGACTGCGTACCGTGGTGGATAGTGAAGTCGGGGCTA
CGGCTATCGATGAGGCATTGGAGCAGGCGGGGATAACAACGCCCTTGGCG
GTGTTGATCGATCTGGATGTTGGGTTGCACCGTACGGGCGTGGCTGATGT
GCAGGCGGCACTGGCCCTGGCGAGACACCTGGCTGGGCTGAAGCATTTGA
AGTTGATCGGGGTGCAGGGGTATGAGGGACACGTGCAACATATTCATAGT
TGGGAAGAGAGACGACAGGAATGTTTGGCATCGATGAAGATATTGACCGA
GACGGCAGAGACGCTGCGCAAGGAGGGCTTCCAGATTGATGTGGTCACTG
GAGGTGGGACCGGGACAGTGGAGTTTTGTGCTTCTGTGCCTGGGGTCACG
GAGTTGCAACCGGGGTCTTTTATTTTCATGGATACGGATTACCGGAATGC
GATTGGGAGAGGCTTCTCGAACAGTCTGACGATATTGTCTACGGTCGTGA
GTCGGCAGGGGGAGAGGCAGGTTACGATTGATGCTGGGTTGAAGTCGTTG
ACTACGGATAGTGGGTTGGCGGAGTGTAAGGATTCCAGGTATGCGCATCA
GAACTTGGGAGATGAGCATGGTGCGTTGAGTTGGACCGAGGGGACACCGG
ATTTGAAGGTCGGGGATAGGGTGGAGATGGTCCCGAGTCACATCGATCCA
ACGATCAATTTGCATGACTTTTATTATGCTCATCGGGGTGGAGTCATTGA
GGAGATCTGGTCCGTGGATGCTAGAGGGAAGGTTCAATAGAGATCGTTTC
TTAGGATAGACTTCAACTATTAATGGGATACACTTCGTGACGAC back to topCoding sequence (CDS) from alignment at ch6:495633..497076+ >KJC3_007943-T1 ID=KJC3_007943-T1|Name=KJC3_007943-T1|organism=Aspergillus niger KJC3|type=CDS|length=1107bp|location=Sequence derived from alignment at ch6:495633..497076+ (Aspergillus niger KJC3)
ATGTATACTCCCCGAATCGGTGACCGGCTCTCGAGCCTCGACACCCCCTC
AATGATCGTCGATCTCGACTTAATGGAATCCAACATCCAGAAACTCTTCT
CCGCCCTCCTTCCCACAGGCTTAAACATCCGCCCGCACCTCAAAACCACC
AAGTGCGCCGCCCTAGCAAAGAAGCTCGTCGCCGCGGGCGCCAAAGGCTG
CTGTGTTGCGAAGGTCTCAGAAGCTGAAGCCATTACGGCAGCCGGGTTCG
ACGATATCCTAATAACGTGCGAGATTATCGGCGCGCCGAAGGTCCAGCGA
CTCGTTGAACTGGTTAGGAAACACCCCGGGCGACTGCGTACCGTGGTGGA
TAGTGAAGTCGGGGCTACGGCTATCGATGAGGCATTGGAGCAGGCGGGGA
TAACAACGCCCTTGGCGGTGTTGATCGATCTGGATGTTGGGTTGCACCGT
ACGGGCGTGGCTGATGTGCAGGCGGCACTGGCCCTGGCGAGACACCTGGC
TGGGCTGAAGCATTTGAAGTTGATCGGGGTGCAGGGGTATGAGGGACACG
TGCAACATATTCATAGTTGGGAAGAGAGACGACAGGAATGTTTGGCATCG
ATGAAGATATTGACCGAGACGGCAGAGACGCTGCGCAAGGAGGGCTTCCA
GATTGATGTGGTCACTGGAGGTGGGACCGGGACAGTGGAGTTTTGTGCTT
CTGTGCCTGGGGTCACGGAGTTGCAACCGGGGTCTTTTATTTTCATGGAT
ACGGATTACCGGAATGCGATTGGGAGAGGCTTCTCGAACAGTCTGACGAT
ATTGTCTACGGTCGTGAGTCGGCAGGGGGAGAGGCAGGTTACGATTGATG
CTGGGTTGAAGTCGTTGACTACGGATAGTGGGTTGGCGGAGTGTAAGGAT
TCCAGGTATGCGCATCAGAACTTGGGAGATGAGCATGGTGCGTTGAGTTG
GACCGAGGGGACACCGGATTTGAAGGTCGGGGATAGGGTGGAGATGGTCC
CGAGTCACATCGATCCAACGATCAATTTGCATGACTTTTATTATGCTCAT
CGGGGTGGAGTCATTGAGGAGATCTGGTCCGTGGATGCTAGAGGGAAGGT
TCAATAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007943-T1.utr5p1 | KJC3_007943-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007943-T1.utr3p1 | KJC3_007943-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001608 |
| DBxref | InterPro:IPR042208 |
| DBxref | InterPro:IPR029066 |
| DBxref | InterPro:IPR026956 |
| DBxref | PFAM:PF14031 |
| DBxref | PFAM:PF01168 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:495633..497076 + |
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