|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:543444..545600- Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007961-T1 ID=KJC3_007961-T1|Name=KJC3_007961-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2157bp|location=Sequence derived from alignment at ch6:543444..545600- (Aspergillus niger KJC3)
CATGCTCCATCCACTCCATCTCCCTCACTGCCATCCATCACTTAATCCGC
AATGCTGTATAATGTCGTTTCTTTGCGATCAACACCCCTGGTTAAACGGA
GAAAAGTGCGCCGAGCATGTGAGTTTTGCCGTCAACACCGGGTCCGCTGC
GATGGCGGATTACCCTGTGGCCAGTGTCGTGCGAACAAGACCCAATGCAG
CAAGCCGACCCAGCACTCCAAACCACCTCCTGGTAACCGGAAACTGCAGC
CGGTTGCTCCACGCAGTCCCCCGCCAGCCGAGTCTGCATCGCCATCCACC
CCGTATCAGGCCGGCCCCGACCAGCAATTGAGGCCAAGATCCAGTTCACA
GGGGAGTCTTTCCGCACCCCATGCTGCCATCGCTCCTCCGCCCCAGCAGT
TGGACTCATTCGCCAGCTTCACCTCTCGGATGAATCGTTTCTGCTCTATG
GTATCGCAGATGTCAGCACGCCCATCCCCTCAACCTATCGATCCGGGTCC
TTCAGACGTTCAGTATTCCTCGCCAGAATTGCTGAGAACAAGCGAGTCAG
ATGTGCCACACCTGCCGCTGGAAAACTTACAGGAACTTCAAACAGCCCTG
TTTGATGTCTTCTGGACTCGGTATTATTTCTTAATGCCGATTGTTAGCCC
GGAAGACTTGACAACCAAGTCAGGTCGAAAGTCTGAGCCCTTGCGGCAAG
CTCTGATGGCCTACTGTTTACAATCAATCCATTACGCGGGGCTTCATGAC
CGCTTGCTAAGCATTCAATTGGGGTCAATATCATCGCACGCAGGGGAGAA
TTCCGCTCAAGCCCCTTCGCTGGCTAGCCTATATGTTGCTTTTTTCCAAC
GGGCTCTTGGGACGAACAGCTACTATCTCATGTACGCAGAGCCTTCCTTA
GTAGACGTGCAGCGGCATCTCTTTATGGCCGCTTTTCTACAGAACTCTGG
AGAATATCAGGCAGCATACAATATCATTGGCGTGGCGATGCGACTCGCAC
AGTCGCTGGACCTACAGCACCCCCTGGCAACACGTGCAACTACACACGAG
GCGGAAACGCGCCATCACGTTTGGTGGACATTGGTACACCTGGACTTCCA
GTGCTCACGGTTTTTGGGAAAACCTATGTCTGTCTCCCTGAATGATGCGA
CACTCAACACGCCACTCCCAAGCCCTCAGCATCCTTGGCCAACCTCGGAG
CTCGGATTTCACTCGGCATCGGTTTCGCTCACTGTGGTAGCAAGGAAGAT
GGTCGAGGATCTGGAGCATCATGCGCGTGGTGTGTCAGGGACAACTGATC
GATATACTCAAATTGAGCGGCATGCGCACCATTTGTCGCGGGAAATCAAG
GGCCTGTACCGATGGAGAGATCAGATTCTGGACGCGAACCTATACGCCAA
CATTACACTTGTCTGTAATGTTTATCAACCAGACGAGGCTACTACTTACA
TGGATCGGCTGAAACACGATCAGAATGCAACATTATCGTTTCATGAGGCC
CCAGCGCTCACCTTACAGAAAACGCTTCTAGAGCTTCAGTACCATGACAT
TGTTCTCTGGGCTCACCGGCCATTTATCCAGTTCCCAAGTCGCGGCTTGG
TTCCGCAACGGAGTCCACAAGCCGATATACACGCCACCACGGCACTACAA
CATGCGCTAACCGTCACAGACCTCATACACCAGCGCATGCTTTATCACGA
TGCTCTCTATGGATGTTCAGAAATTTACCAGTACGTGTGGAACGCCGTTC
TCACCCTTGTGGGGTTTATGTTGGCCTACCCCCTATGCTACTGGTTCCCA
CTTGCTCAGCAACATGTTGAGCGATCACTTCCGATCTTTGAGGGGGCAGG
GACAATCAACCCAATTGCATCTCGAGCGGCTCACCGGACGCGGTATCTAC
TAGGGAGAGTCAGTGCCCTCATAGAGTTGCTTAGTTCGCAGTCATCTGCC
TTCGGCAATCGCAACGATTACCAGTTTATGCAGACCGATGATCACATCGA
GACGGAGAACCAGCAATCTGTGCCCGTTACATCCGAGGAGGACGCTCTAT
GGTCATTTGCAGATACTGTCGACCCTAACACCTGGTCTGGTTACTGTCAC
GAAATCAGTGATTTGCTGATGGACGTGCCCGAGATACATATGGGGAGTAC
TTATTGA back to topCoding sequence (CDS) from alignment at ch6:543444..545600- >KJC3_007961-T1 ID=KJC3_007961-T1|Name=KJC3_007961-T1|organism=Aspergillus niger KJC3|type=CDS|length=1524bp|location=Sequence derived from alignment at ch6:543444..545600- (Aspergillus niger KJC3)
ATGCCGATTGTTAGCCCGGAAGACTTGACAACCAAGTCAGGTCGAAAGTC
TGAGCCCTTGCGGCAAGCTCTGATGGCCTACTGTTTACAATCAATCCATT
ACGCGGGGCTTCATGACCGCTTGCTAAGCATTCAATTGGGGTCAATATCA
TCGCACGCAGGGGAGAATTCCGCTCAAGCCCCTTCGCTGGCTAGCCTATA
TGTTGCTTTTTTCCAACGGGCTCTTGGGACGAACAGCTACTATCTCATGT
ACGCAGAGCCTTCCTTAGTAGACGTGCAGCGGCATCTCTTTATGGCCGCT
TTTCTACAGAACTCTGGAGAATATCAGGCAGCATACAATATCATTGGCGT
GGCGATGCGACTCGCACAGTCGCTGGACCTACAGCACCCCCTGGCAACAC
GTGCAACTACACACGAGGCGGAAACGCGCCATCACGTTTGGTGGACATTG
GTACACCTGGACTTCCAGTGCTCACGGTTTTTGGGAAAACCTATGTCTGT
CTCCCTGAATGATGCGACACTCAACACGCCACTCCCAAGCCCTCAGCATC
CTTGGCCAACCTCGGAGCTCGGATTTCACTCGGCATCGGTTTCGCTCACT
GTGGTAGCAAGGAAGATGGTCGAGGATCTGGAGCATCATGCGCGTGGTGT
GTCAGGGACAACTGATCGATATACTCAAATTGAGCGGCATGCGCACCATT
TGTCGCGGGAAATCAAGGGCCTGTACCGATGGAGAGATCAGATTCTGGAC
GCGAACCTATACGCCAACATTACACTTGTCTGTAATGTTTATCAACCAGA
CGAGGCTACTACTTACATGGATCGGCTGAAACACGATCAGAATGCAACAT
TATCGTTTCATGAGGCCCCAGCGCTCACCTTACAGAAAACGCTTCTAGAG
CTTCAGTACCATGACATTGTTCTCTGGGCTCACCGGCCATTTATCCAGTT
CCCAAGTCGCGGCTTGGTTCCGCAACGGAGTCCACAAGCCGATATACACG
CCACCACGGCACTACAACATGCGCTAACCGTCACAGACCTCATACACCAG
CGCATGCTTTATCACGATGCTCTCTATGGATGTTCAGAAATTTACCAGTA
CGTGTGGAACGCCGTTCTCACCCTTGTGGGGTTTATGTTGGCCTACCCCC
TATGCTACTGGTTCCCACTTGCTCAGCAACATGTTGAGCGATCACTTCCG
ATCTTTGAGGGGGCAGGGACAATCAACCCAATTGCATCTCGAGCGGCTCA
CCGGACGCGGTATCTACTAGGGAGAGTCAGTGCCCTCATAGAGTTGCTTA
GTTCGCAGTCATCTGCCTTCGGCAATCGCAACGATTACCAGTTTATGCAG
ACCGATGATCACATCGAGACGGAGAACCAGCAATCTGTGCCCGTTACATC
CGAGGAGGACGCTCTATGGTCATTTGCAGATACTGTCGACCCTAACACCT
GGTCTGGTTACTGTCACGAAATCAGTGATTTGCTGATGGACGTGCCCGAG
ATACATATGGGGAGTACTTATTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007219 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:543444..545600 - |
|
