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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:651403..654689+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008005-T1 ID=KJC3_008005-T1|Name=KJC3_008005-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3287bp|location=Sequence derived from alignment at ch6:651403..654689+ (Aspergillus niger KJC3)
TGACTCCCGGCTCCTATCTGAGCCCATCGATTTCCTGCGCCAGCCTTTCA
ACTTAGTCCCCCTCTCGAAACCTCCGAGGATCGCAACCGGCTTATGAATC
GCGAACCGGCATGTCTCACCCAGTCAATTACCACCTCTTTGAGGCAGTCG
GACTCCACATGAGTGAACCTAAAGCATTGAAGTGGGACCCGGAGGAGGCT
GTCTATCAATAATGTCCATGAACGCTCCAGCCGGCTCGGTCTGGGCCGAA
GGTCCCACTCCTCTAGTTCTCACCATCCAGGGGAGCCTTTGAGTCCGCCG
AACTTTACATTCATTCATCATCCCGGCAGGACAGGAACAGTGAAAGGTAT
CGCTGCTGTGCCTGCCTCATGGTTGGTTCCTCCTCCACCATGGCCCTACT
TGTGATTAGCGCGTGGACTCGTCCCGATCCCCTTTCACTCCCTCCCTCCT
AGGATTTGAAATCTTTCTTCGGCATCGATCCTGTCCGGGGGTTCCCCTCT
TCCCCTTCTCCCCGGTTCCTATCTTCCTTTCTTGCCAGATTACCTTCTTC
AAAAGCCATGGCAGCTCAAAAGGCCGTTTTCACCGTCTCGGCTCAGGCCA
CTCAGCTAGGCAATCGCATCTCGGTGCACATGCTGGACTACCTCAGCACC
GAGCACGACTTGCCGAACGGCTTTCGCGAACTGTCACAGACTTTCTTAGA
CACTTGCCGCGCTTTATGGGCCATTGATGCTGGTCTCACCGAATCCACTG
CTGCCGGTCGCTCCCTGCCCGATGTGATCGTGGAGGAGGTGGCGAAAAAG
TTCATGGCCGCTTATCGTGATTTTCAAAGTCTGGACAAGGTCGTGACTAA
ACTCATCCAGTATGAACATCGTGGCGCCCTTGGCAGGCTTCAACGTGGAT
GGAATCGCCCCAGCCTCGAACTGCACCGCATTCGCGAGTCGTTGAAAAAG
ACAACCGAAACACTTCAAATCAGCGTCCTCGCCTTTCACTGGTCCCTTGG
GGAACAGCCGTTTATGGCGGAATCAGTGGGCATCGGCTACGCCGGGTTGG
CTGCCGCACTGGACCGCATGGCCAAAGGCCGGTCGGTAATGGGCATCAAT
AAGGCTAAATCTCTGGAACAGGTATCGAAGGAGGTGGCTACTTCGTTGTC
ATCAGCGTCAGTCCCCTCTGTGCCCCCCAAAGAATCCCCAGAACAACTCT
CGGTTGGGATAGAAAATCACCCGTCCAATACCGATGACATACTCTCCTCT
GTGCTTTCTCTTGACTCCCTCCTTATTACGAACGACAATGGCCAGGACGG
TCTTTCTTTCCCCCCAGTCAACTCTCGTCCTCAGCCTCTGCGACCAAATG
GAAATCCTGTGCGAACGAGCTCGCGCGAGCCGCAAGCGGAATCTGCTACA
CCTCTCGACCACAATATATCTGGGGATACCCTCACACATCGCCAGCTATA
TGAGTCCTCAGCCCAACCCCTGCATCGCACCCCTAGCCGAAATAGTGGAG
CTAGTGCGACGCGATTGCGCGGTGCGTTAGCCTCCGCCGTCCGGGGACGG
AACCACAAGTTGCTAGAGCAGTTGCTGGACAGTGGAGTGTCGCCCAATCT
TGGGGAGCATATCCATCCGCTCAACGAGGCCGTGCACCAGCACGATTTCC
AGGGCATGCGCCTACTTCTGCAGTTTGGTGCGAACCCAAACGAACCAGAC
CGGCAGGGAGAGACGCCCTTGTTTGTCGCAGTGGATGAGTCATTTATCGA
CGGGGCGAACTTATTGCTAAAGTATCGCGCCAACCCCAACTATGCATCAG
AGCCGGGACGAGACTCTCCCTTGAGTCGTGCACTGGCAAAGGGCAAGCTC
AATATGGTGCAGCAGCTGCTTGCGCATGGGGGCAATGCAGATACTGAAAC
CCCAAGCGGTAGCACTGTGCTTATCGAGCTTATCAGACAACGGGCGCCAC
CGAAGCTAGTCACTATGTTACTTGACGCCGGCAGCGACCCAAACAAGAAG
GGCTGCCAAGGGAGAACAGCACTCAATGAGGCGGTGCAGACCGAGCAGGT
TGCCGTCTTGACGATACTGCTCGAACATGGCGCCAATCCGAATCTCCCTG
GACCCGAGCATGTTCTATGGCTAGCTATCTCTCGGCCAGCATGTTTGCGT
CTTCTGTTAAACAGCGGGGCCGACATCAAAAAGACCCCAGGTCTCATGGA
ACAGGCGACCAGCATGAACAACATCGAAGCTGTTCGTACGCTGCTGGAGG
TTGGGCTCGATCCGAATGCCAAGAAGGACGGTACCTATACTCCCCTCTGC
TCCGCCATTCGCGACAACCGGGCCGATATTTTGACACTGCTGCTGGAACA
TGGTGCGAACCCAAACGTCATGGCGTCCGAGTATCCCGCTTGGAAATGCA
TTACCCACAACCGACTCCATTTTTTGCCCGTCTTGGTCGCGGCTGGGGCT
GACCTTTTTCAACCACCTGGAATCGTAGAACTGGCCGTGCAAGTCAACAA
CACGGAGGCCCTGAAGTGGCTGGTTGAGCAGGGAGGCGCGAACGTGAATG
ACCGTAACGCACAAGGTCATACTGCACTAACCACCGCCATCCGCGAGAAC
CGGTCGGATATGCTCAGCTACCTGCTCGCACATGGCGCCAACCCAGCTCA
ACGCGGGCAGGATTGGCCTGTATGCATGGCCGTGCGGTCTCCGGCTCTGC
TTCAGAAACTGCTCCCGGTGGTCCCTGATATTTCTGCTCACAAGGGCGTC
ATGGAGATGGCCGTGCTTGCCAACCAGCTCGAGAGCATTAAACTGCTGCT
CGCCGCCGGTACCAATGTCGAGTATAAGAACGGTGGCGTCTTCTCCCCAC
TGACTACGGCTTTGCGAGAGCGACATGACGATATTGTGAGGTTCCTGCTG
GAGGAAGGAGGTGCCGATCCAAACGCCCCCGGCGAGCATCTTCCTCTTGT
GAAAGCGATCCGCCGGATTATCAATGGTGATCTTTCCATGGTTGAGCTTC
TGCTTGAGAAGGGTGCCGACCCCAATAAAACTTACCGAAACTGGAATGCC
GTCATGCAGGCGATTGAGTATCGGGATCTGCCATTGTTACATCTGCTCGT
TAAGAAAGGAGGCGGAGCTGATCTCACGCAGCACGATGAGACAGGTCAGA
CTGTCCTGGAAATGGTGAATTCTGGGTGGCCTGAGGCCATGCAGTTCCTT
CTTGACAATGTACGCCCCTAGCTTGTAGTCTTTTATGAACTTTAGTGAGT
TCTAGGATTCTGATATAGACCTAACTCATATCATAAT back to topCoding sequence (CDS) from alignment at ch6:651403..654689+ >KJC3_008005-T1 ID=KJC3_008005-T1|Name=KJC3_008005-T1|organism=Aspergillus niger KJC3|type=CDS|length=2664bp|location=Sequence derived from alignment at ch6:651403..654689+ (Aspergillus niger KJC3)
ATGGCAGCTCAAAAGGCCGTTTTCACCGTCTCGGCTCAGGCCACTCAGCT
AGGCAATCGCATCTCGGTGCACATGCTGGACTACCTCAGCACCGAGCACG
ACTTGCCGAACGGCTTTCGCGAACTGTCACAGACTTTCTTAGACACTTGC
CGCGCTTTATGGGCCATTGATGCTGGTCTCACCGAATCCACTGCTGCCGG
TCGCTCCCTGCCCGATGTGATCGTGGAGGAGGTGGCGAAAAAGTTCATGG
CCGCTTATCGTGATTTTCAAAGTCTGGACAAGGTCGTGACTAAACTCATC
CAGTATGAACATCGTGGCGCCCTTGGCAGGCTTCAACGTGGATGGAATCG
CCCCAGCCTCGAACTGCACCGCATTCGCGAGTCGTTGAAAAAGACAACCG
AAACACTTCAAATCAGCGTCCTCGCCTTTCACTGGTCCCTTGGGGAACAG
CCGTTTATGGCGGAATCAGTGGGCATCGGCTACGCCGGGTTGGCTGCCGC
ACTGGACCGCATGGCCAAAGGCCGGTCGGTAATGGGCATCAATAAGGCTA
AATCTCTGGAACAGGTATCGAAGGAGGTGGCTACTTCGTTGTCATCAGCG
TCAGTCCCCTCTGTGCCCCCCAAAGAATCCCCAGAACAACTCTCGGTTGG
GATAGAAAATCACCCGTCCAATACCGATGACATACTCTCCTCTGTGCTTT
CTCTTGACTCCCTCCTTATTACGAACGACAATGGCCAGGACGGTCTTTCT
TTCCCCCCAGTCAACTCTCGTCCTCAGCCTCTGCGACCAAATGGAAATCC
TGTGCGAACGAGCTCGCGCGAGCCGCAAGCGGAATCTGCTACACCTCTCG
ACCACAATATATCTGGGGATACCCTCACACATCGCCAGCTATATGAGTCC
TCAGCCCAACCCCTGCATCGCACCCCTAGCCGAAATAGTGGAGCTAGTGC
GACGCGATTGCGCGGTGCGTTAGCCTCCGCCGTCCGGGGACGGAACCACA
AGTTGCTAGAGCAGTTGCTGGACAGTGGAGTGTCGCCCAATCTTGGGGAG
CATATCCATCCGCTCAACGAGGCCGTGCACCAGCACGATTTCCAGGGCAT
GCGCCTACTTCTGCAGTTTGGTGCGAACCCAAACGAACCAGACCGGCAGG
GAGAGACGCCCTTGTTTGTCGCAGTGGATGAGTCATTTATCGACGGGGCG
AACTTATTGCTAAAGTATCGCGCCAACCCCAACTATGCATCAGAGCCGGG
ACGAGACTCTCCCTTGAGTCGTGCACTGGCAAAGGGCAAGCTCAATATGG
TGCAGCAGCTGCTTGCGCATGGGGGCAATGCAGATACTGAAACCCCAAGC
GGTAGCACTGTGCTTATCGAGCTTATCAGACAACGGGCGCCACCGAAGCT
AGTCACTATGTTACTTGACGCCGGCAGCGACCCAAACAAGAAGGGCTGCC
AAGGGAGAACAGCACTCAATGAGGCGGTGCAGACCGAGCAGGTTGCCGTC
TTGACGATACTGCTCGAACATGGCGCCAATCCGAATCTCCCTGGACCCGA
GCATGTTCTATGGCTAGCTATCTCTCGGCCAGCATGTTTGCGTCTTCTGT
TAAACAGCGGGGCCGACATCAAAAAGACCCCAGGTCTCATGGAACAGGCG
ACCAGCATGAACAACATCGAAGCTGTTCGTACGCTGCTGGAGGTTGGGCT
CGATCCGAATGCCAAGAAGGACGGTACCTATACTCCCCTCTGCTCCGCCA
TTCGCGACAACCGGGCCGATATTTTGACACTGCTGCTGGAACATGGTGCG
AACCCAAACGTCATGGCGTCCGAGTATCCCGCTTGGAAATGCATTACCCA
CAACCGACTCCATTTTTTGCCCGTCTTGGTCGCGGCTGGGGCTGACCTTT
TTCAACCACCTGGAATCGTAGAACTGGCCGTGCAAGTCAACAACACGGAG
GCCCTGAAGTGGCTGGTTGAGCAGGGAGGCGCGAACGTGAATGACCGTAA
CGCACAAGGTCATACTGCACTAACCACCGCCATCCGCGAGAACCGGTCGG
ATATGCTCAGCTACCTGCTCGCACATGGCGCCAACCCAGCTCAACGCGGG
CAGGATTGGCCTGTATGCATGGCCGTGCGGTCTCCGGCTCTGCTTCAGAA
ACTGCTCCCGGTGGTCCCTGATATTTCTGCTCACAAGGGCGTCATGGAGA
TGGCCGTGCTTGCCAACCAGCTCGAGAGCATTAAACTGCTGCTCGCCGCC
GGTACCAATGTCGAGTATAAGAACGGTGGCGTCTTCTCCCCACTGACTAC
GGCTTTGCGAGAGCGACATGACGATATTGTGAGGTTCCTGCTGGAGGAAG
GAGGTGCCGATCCAAACGCCCCCGGCGAGCATCTTCCTCTTGTGAAAGCG
ATCCGCCGGATTATCAATGGTGATCTTTCCATGGTTGAGCTTCTGCTTGA
GAAGGGTGCCGACCCCAATAAAACTTACCGAAACTGGAATGCCGTCATGC
AGGCGATTGAGTATCGGGATCTGCCATTGTTACATCTGCTCGTTAAGAAA
GGAGGCGGAGCTGATCTCACGCAGCACGATGAGACAGGTCAGACTGTCCT
GGAAATGGTGAATTCTGGGTGGCCTGAGGCCATGCAGTTCCTTCTTGACA
ATGTACGCCCCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008005-T1.utr5p1 | KJC3_008005-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008005-T1.utr3p1 | KJC3_008005-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:651403..654689 + |
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