You are here

Home

KJC3_008024-T1, KJC3_008024-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008024-T1
Unique NameKJC3_008024-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:713957..714818-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008024-T1 ID=KJC3_008024-T1|Name=KJC3_008024-T1|organism=Aspergillus niger KJC3|type=mRNA|length=862bp|location=Sequence derived from alignment at ch6:713957..714818- (Aspergillus niger KJC3)
GGAGGTTTTAGGCTGGACTTCGTTGAGTCTGCTAGTATGGGCCTGACGTT
TGGCATGGCATACCAGTCTCTTATTGACAGGCTGGAGATTAAGCAGAACG
AAAACGTTGGTATTCTGATTGTGAGTCTCACTAAATCCCTGAGCCAACGT
TGTAGTGACTATTACTACCTTGGTTGGCTTATGAGCACACATCTAACTGT
TTTAGATCAATGGCGGAGGTGGAGTTGGAAGCGCTGCCATCCAAATCGCC
AGGAAGGTTCTGCAGCTCCCCGTGGTGATTGCAACTGCATCCCGACCTGA
GACCATGGACTCATGCAGAATGGGTGCCACCCATGTGGTGAACCATAGGG
AAGATCTCGAATCCCAAATCAAAGCCTTGAATCTGGATGTCCCAATCAAG
TACGTTCTGAACCGTCTTACTGTCGTGGCATGCGCTTAAAGTGCTGACAC
TAATGAACTCAGATACGTTTATGTGGTCGCAAGGACGGAGCAATATATCC
ACGTCCTAGGCAAGATCTGTGCACCCTTCGCCAAAGTTTGCTCCATCGTG
CAAGCCAAGTTCGATCTCTACGGGACGGAGTTCATGTCGAAGTCCATGAC
CTTCTCTTGGAACTGGCTGGGCACGGCAGCTTATCATCGTACAATATTGG
AGAACTATCAACGAGCTTTCGAGGCGTTGGCCCATTACGTAGACGAGGGG
AAGCTGGTACCTAACCTTAATAAGCGTCTCAAGTTGAATGTTGCTGGATT
GAAGGAAGCTCATCGGTTGATCGAGTCTGCGACCACCGTGGGAAAGATTG
CTCTTGGGGTGGATGAACCTGGCGAGGCGCTCCATTTTCCTGAAAAGGGT
TGCTCCCCATAA
back to top

Coding sequence (CDS) from alignment at ch6:713957..714818-

>KJC3_008024-T1 ID=KJC3_008024-T1|Name=KJC3_008024-T1|organism=Aspergillus niger KJC3|type=CDS|length=2034bp|location=Sequence derived from alignment at ch6:713957..714818- (Aspergillus niger KJC3)
ATACGTTTATGTGGTCGCAAGGACGGAGCAATATATCCACGTCCTAGGCA
AGATCTGTGCACCCTTCGCCAAAGTTTGCTCCATCGTGCAAGCCAAGTTC
GATCTCTACGGGACGGAGTTCATGTCGAAGTCCATGACCTTCTCTTGGAA
CTGGCTGGGCACGGCAGCTTATCATCGTACAATATTGGAGAACTATCAAC
GAGCTTTCGAGGCGTTGGCCCATTACGTAGACGAGGGGAAGCTGGTACCT
AACCTTAATAAGCGTCTCAAGTTGAATGTTGCTGGATTGAAGGAAGCTCA
TCGGTTGATCGAGTCTGCGACCACCGTGGGAAAGATTGCTCTTGGGGTGG
ATGAACCTGGCGAGGCGCTCCATTTTCCTGAAAAGGGTTGCTCCCCATAA
ATCAATGGCGGAGGTGGAGTTGGAAGCGCTGCCATCCAAATCGCCAGGAA
GGTTCTGCAGCTCCCCGTGGTGATTGCAACTGCATCCCGACCTGAGACCA
TGGACTCATGCAGAATGGGTGCCACCCATGTGGTGAACCATAGGGAAGAT
CTCGAATCCCAAATCAAAGCCTTGAATCTGGATGTCCCAATCAAATGGGC
CTGACGTTTGGCATGGCATACCAGTCTCTTATTGACAGGCTGGAGATTAA
GCAGAACGAAAACGTTGGTATTCTGATTATACGTTTATGTGGTCGCAAGG
ACGGAGCAATATATCCACGTCCTAGGCAAGATCTGTGCACCCTTCGCCAA
AGTTTGCTCCATCGTGCAAGCCAAGTTCGATCTCTACGGGACGGAGTTCA
TGTCGAAGTCCATGACCTTCTCTTGGAACTGGCTGGGCACGGCAGCTTAT
CATCGTACAATATTGGAGAACTATCAACGAGCTTTCGAGGCGTTGGCCCA
TTACGTAGACGAGGGGAAGCTGGTACCTAACCTTAATAAGCGTCTCAAGT
TGAATGTTGCTGGATTGAAGGAAGCTCATCGGTTGATCGAGTCTGCGACC
ACCGTGGGAAAGATTGCTCTTGGGGTGGATGAACCTGGCGAGGCGCTCCA
TTTTCCTGAAAAGGGTTGCTCCCCATAAATCAATGGCGGAGGTGGAGTTG
GAAGCGCTGCCATCCAAATCGCCAGGAAGGTTCTGCAGCTCCCCGTGGTG
ATTGCAACTGCATCCCGACCTGAGACCATGGACTCATGCAGAATGGGTGC
CACCCATGTGGTGAACCATAGGGAAGATCTCGAATCCCAAATCAAAGCCT
TGAATCTGGATGTCCCAATCAAATGGGCCTGACGTTTGGCATGGCATACC
AGTCTCTTATTGACAGGCTGGAGATTAAGCAGAACGAAAACGTTGGTATT
CTGATTATACGTTTATGTGGTCGCAAGGACGGAGCAATATATCCACGTCC
TAGGCAAGATCTGTGCACCCTTCGCCAAAGTTTGCTCCATCGTGCAAGCC
AAGTTCGATCTCTACGGGACGGAGTTCATGTCGAAGTCCATGACCTTCTC
TTGGAACTGGCTGGGCACGGCAGCTTATCATCGTACAATATTGGAGAACT
ATCAACGAGCTTTCGAGGCGTTGGCCCATTACGTAGACGAGGGGAAGCTG
GTACCTAACCTTAATAAGCGTCTCAAGTTGAATGTTGCTGGATTGAAGGA
AGCTCATCGGTTGATCGAGTCTGCGACCACCGTGGGAAAGATTGCTCTTG
GGGTGGATGAACCTGGCGAGGCGCTCCATTTTCCTGAAAAGGGTTGCTCC
CCATAAATCAATGGCGGAGGTGGAGTTGGAAGCGCTGCCATCCAAATCGC
CAGGAAGGTTCTGCAGCTCCCCGTGGTGATTGCAACTGCATCCCGACCTG
AGACCATGGACTCATGCAGAATGGGTGCCACCCATGTGGTGAACCATAGG
GAAGATCTCGAATCCCAAATCAAAGCCTTGAATCTGGATGTCCCAATCAA
ATGGGCCTGACGTTTGGCATGGCATACCAGTCTCTTATTGACAGGCTGGA
GATTAAGCAGAACGAAAACGTTGGTATTCTGATT
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008024KJC3_008024Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008024-T1KJC3_008024-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008024-T1.cdsKJC3_008024-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008024-T1.exon3KJC3_008024-T1.exon3Aspergillus niger KJC3exon
KJC3_008024-T1.exon2KJC3_008024-T1.exon2Aspergillus niger KJC3exon
KJC3_008024-T1.exon1KJC3_008024-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008024-T1.utr5p1KJC3_008024-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefPFAM:PF13602
DBxrefPFAM:PF00107
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:713957..714818 -
Powered by Drupal