You are here

Home

KJC3_008186-T1, KJC3_008186-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008186-T1
Unique NameKJC3_008186-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:1213805..1215664+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008186-T1 ID=KJC3_008186-T1|Name=KJC3_008186-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1860bp|location=Sequence derived from alignment at ch6:1213805..1215664+ (Aspergillus niger KJC3)
CCCTCAGCGTCGCTTGACTCCGCAGTCTTGAGTTCAGGACATGACGTGTG
TCGACTTTGATGCAATACGAGCTTTCTGCAAGGATTCTCACTTGGGTGCG
ACCGGCAGCGTCTTTATTGAATGGCATCTTCAAAATCCCAGCATTGAAGT
CAACTACCTGACGTGCCACGTTTCAGATCCCGAATCGTGATAGTCCTTTG
ACCTCCTTTTGCGCCATCTTCGTGGCCGCTCGTATGGATGGCGGTGCCAC
ACTCGCTAATTACCCAGCAGATCCCTTTGCGCGTGATATCTGGATTGTCA
CAAATATTTGCCGACAGCGTTCCCTGACTCCGAAGAGGCAACTCAACAGA
ATCTGCTTATTATAACGGTATCTCCAGATCTCCAGATGACTGCCCAAATG
TAACTGTCGCAAGCGAACCGAGGACGGCCAAACTCAATTGACAGCCATAG
AAGCCGTACAAAGAAAGGATTATGCTTTCGGGGAATATCAAGAAACCGGA
GCCAAGATCATCATGACACCAGCGGCCGGACTTAAGAGCAAATCCGAGGA
TCCACAGTGAACAAGGATGAATATCGCCCACTGACTATCTTCGGACTCCG
TTCTTTGTTCCGAGATGCAGAGTCTCGCTGCTCGGTTTCCGTGTCTGCGC
AGCAGGAATAATACGAACGACTGACTCCTTTGTCCCCTACAAATGGCAAG
GACTCGCGCGCCACCACCTTGCAACGACTATTTCCAGAAACGGCAGAATC
AAACCGGACCAGATCATCTTAACCACAATGTCCAAGATCCTAGTGGTAGT
AGGCGCCACCGGCCAACAGGGCAGCTCCATCATCAACTTTATCCTCTCCG
ACCCCAAAATCAGCCAGGAGTATACCATCCGAGGCACAACACGCGACCCC
AACAGTTCAAAAGCACAAGCACTAGCAGCCAAAGGTATCGAAATCGTTGC
AGCCAACTTCAATGAGCCCGAAACCCTTCAACGCGCCTTTACAGGCGCAC
ACACAGTATTCGCAAACACCCCAACCATCTACGACGGCCACACCTACGAG
CACGAAGTCGCGCACGGTCGCTCCCTAATCGACGCCGCGGTCGCAGTGGG
TGTGCCCTTCTACATCTACTCCACGCTGCCTAGCATCTCAAAAATATCCC
AAGGATGGCTAAAAAATGGCGGCCATTTCGACGGTAAAGAGGAAGTCGAG
CAGTACATCCGTACGCAGCCGATTCGAAGCGCCTTTGTCGCGCCGGGCTC
ATTCATGTCGAATTTCCATGATACAATGGCTCCAAGACGCATGGAGAATG
GCGACTACGCCTTGCTTTTGCCTGTTCCGGCTCATATAAGGCTGCCGTTG
ATTGAGACGGAGGCTGATTTGGGGAAGTGGGTAGCTGCCATTCTGGCGGA
TTTTGATCAGTATGAGGGAGAGGTACTTTGCTGTGCTACGGCGCTGTATA
GCTTTGAGGAAATTGTGCAGACTATGAGCCGCGTGTCAGGGAAGACGGTG
ACGTATCGTGAAGTGCCGGTGGAGATTTGGGCGACGTATCTGCCGGAGCT
GATGAGGGGTTATATTGTGGATATGTTTACGCTTTTTAGGGTCTATGGGT
ATTATGGGGATGGGACGGAGGAGAAGGTGAAATGGTCGGCGGAGCAGGCA
AGGGGGGACTTGACCACGTTGGAGGAGTACTTGAGAAAAATTCCACTTGA
CCTTGAGTAGGTAGACTGATAGTATATGGAACAGAGAATGGGATGGCTGA
CTGAAGGTGCTGGAATGAATATGGCGTTTCCTTCGGGGTCATTTCCCTAT
GTACTCTGGCAATTACATTCGATAATCTCAGAATATGGCGCAGGCCAACT
TCATCAGAAA
back to top

Coding sequence (CDS) from alignment at ch6:1213805..1215664+

>KJC3_008186-T1 ID=KJC3_008186-T1|Name=KJC3_008186-T1|organism=Aspergillus niger KJC3|type=CDS|length=933bp|location=Sequence derived from alignment at ch6:1213805..1215664+ (Aspergillus niger KJC3)
ATGTCCAAGATCCTAGTGGTAGTAGGCGCCACCGGCCAACAGGGCAGCTC
CATCATCAACTTTATCCTCTCCGACCCCAAAATCAGCCAGGAGTATACCA
TCCGAGGCACAACACGCGACCCCAACAGTTCAAAAGCACAAGCACTAGCA
GCCAAAGGTATCGAAATCGTTGCAGCCAACTTCAATGAGCCCGAAACCCT
TCAACGCGCCTTTACAGGCGCACACACAGTATTCGCAAACACCCCAACCA
TCTACGACGGCCACACCTACGAGCACGAAGTCGCGCACGGTCGCTCCCTA
ATCGACGCCGCGGTCGCAGTGGGTGTGCCCTTCTACATCTACTCCACGCT
GCCTAGCATCTCAAAAATATCCCAAGGATGGCTAAAAAATGGCGGCCATT
TCGACGGTAAAGAGGAAGTCGAGCAGTACATCCGTACGCAGCCGATTCGA
AGCGCCTTTGTCGCGCCGGGCTCATTCATGTCGAATTTCCATGATACAAT
GGCTCCAAGACGCATGGAGAATGGCGACTACGCCTTGCTTTTGCCTGTTC
CGGCTCATATAAGGCTGCCGTTGATTGAGACGGAGGCTGATTTGGGGAAG
TGGGTAGCTGCCATTCTGGCGGATTTTGATCAGTATGAGGGAGAGGTACT
TTGCTGTGCTACGGCGCTGTATAGCTTTGAGGAAATTGTGCAGACTATGA
GCCGCGTGTCAGGGAAGACGGTGACGTATCGTGAAGTGCCGGTGGAGATT
TGGGCGACGTATCTGCCGGAGCTGATGAGGGGTTATATTGTGGATATGTT
TACGCTTTTTAGGGTCTATGGGTATTATGGGGATGGGACGGAGGAGAAGG
TGAAATGGTCGGCGGAGCAGGCAAGGGGGGACTTGACCACGTTGGAGGAG
TACTTGAGAAAAATTCCACTTGACCTTGAGTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008186KJC3_008186Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008186-T1.utr5p1KJC3_008186-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008186-T1.exon1KJC3_008186-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008186-T1.cdsKJC3_008186-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008186-T1.utr3p1KJC3_008186-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008186-T1KJC3_008186-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_6.9
NoteSMCOG1199:NmrA family protein
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR008030
DBxrefPFAM:PF05368
DBxrefPFAM:PF13460
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:1213805..1215664 +
Powered by Drupal