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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1240377..1242144- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008197-T1 ID=KJC3_008197-T1|Name=KJC3_008197-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1768bp|location=Sequence derived from alignment at ch6:1240377..1242144- (Aspergillus niger KJC3)
CTAACCTATAAATACCTGGTTCATGCTTGGCTCTGATTGTTTCGTCATTT
GGGGCCGATACTAGTAGTAAGCTTGGCAAGATCGGCAGCATTTGGGTTCC
AACATTTAGTTATATCTCAGTCCACTCAAATGAACAACGCCTAATACCAT
ATGCTTTTTCAGCATGGATTTGTCCATTGGTTGATAAGCACCATTAGCGA
CTAATTTCCCAGAAACTAACAACTGGTGAACTCATGTAAGAGACCTTCTG
ACTGCAACACTTGACTATGACCAACTAACTTATTTATAGTTTAGATCATT
ATCAGGAATAACATGCTTCGTTAGCGGTTATATACCATAAGCAAAGCTGC
TACATTCCAACTATGCGTTGCTACGAGACTTTGCTGTTGACCGCTTGAAC
ATCAGCATCCGGTCTACCCGGACGCAAGCAGTGGGGCGCTATCAAGCTCC
ATTAATCTCGCAGCTTAGACTACTTCCGAGGGCAGTGCAAGCTTCAAGCA
CCAACATCGCCAACAATGATCGATCGATCGCCGCGAAACATGCCCGATGT
GGCCCGCTAAGCTGCCGTCAGACTAGGCCACCCGCTAAGCCACTCGACTG
CGACCGCAATGCGGCATTAGGTGAACATTTAGCAGGATTGTGTTGAAGAA
AATGCTCCCATTCCCACTCATTCCTGTTGGGGGCGAAACCTTGTTCCCCC
TTAATCAACAGAAACAAGGAAATAAAACCGGAGAGTTATCCGACCAGGTT
GACAATTTCTCACACAGTACCCTCGACCAGTCCATTGAGTCTTGATTATC
ATCATGAACCGGTACCTGTCTATCCCCCTGTGCTTGGCGAGCGCTGTTCC
TGCGCTAGCGGGTCTGGCGGCCCGCGACCCCATCGGTACCATCTGCACCA
AGAACAACATCATCACCACCGACGACTTCATCCTCTACAATAATCTCTGG
GGCGAGGACTATGCCACTTCCGGCTCCGAGTGTACCTACCTCGACTATGA
CAGCGGCAACTCCATCTCATGGCAGACGTCGTGGACCTGGGCTGGCGGCG
ACGACTATGTCAAGAGCTATCCCAATGCCGTCCTGAACGTCGGTGCCAAG
CAGCTGAGCACGATCACCAGTATTCCCTCGACCTGGAAATGGAGGTGAGC
CAATCTTTCCTGTCACGAATGAAGCTATTGTCTAATAATCTTAGCTACAC
GGGCAACGACCTCGTCGCCGACGTCTCCTACGATGCCTTCCTCTCCACCA
CTGACTCCACAACCGCCACTCACGAATACGAAATCATGATCTGGCTCGCC
GCCTACGGTGGCATTGAGCCCATCGGCAACTCGGACGGTCCTATCGCCAG
CCCCACTATCGGTGGCTACACCTGGGATCTCTACAAGGGTCCCAACGACT
GGACAGTGTATAGTTTCGTGGCCCGCGAGACTATCACGGACTTCTCGGCC
GACGTCTTGGAGTTCTTTACTTATTTGGTTGATAACGAGGGCGTCTCTTC
CAGCTTGTATTTGCAGACCCTGGGTGCGGGCACTGAACCGAAGACTGGCT
CTGATGCTTGGTTCACGGTTTCGCCGTATACTGTTAGCATCAATACTTAG
AGGGTTCAAGTAGTGTGACGTTAGCAGTGAGTGGTTTAGTTGGGGAGAAG
TGGTGAAGATATTAGAGTGGTAAATTGACCAAGCTTGTGATATTTTTTGT
GATAACCAGACGGTAATTAGTTTCGTCGATAATTAATATTGAAAATCTTA
TGGGCGCAACGCTATCCA back to topCoding sequence (CDS) from alignment at ch6:1240377..1242144- >KJC3_008197-T1 ID=KJC3_008197-T1|Name=KJC3_008197-T1|organism=Aspergillus niger KJC3|type=CDS|length=1494bp|location=Sequence derived from alignment at ch6:1240377..1242144- (Aspergillus niger KJC3)
CTACACGGGCAACGACCTCGTCGCCGACGTCTCCTACGATGCCTTCCTCT
CCACCACTGACTCCACAACCGCCACTCACGAATACGAAATCATGATCTGG
CTCGCCGCCTACGGTGGCATTGAGCCCATCGGCAACTCGGACGGTCCTAT
CGCCAGCCCCACTATCGGTGGCTACACCTGGGATCTCTACAAGGGTCCCA
ACGACTGGACAGTGTATAGTTTCGTGGCCCGCGAGACTATCACGGACTTC
TCGGCCGACGTCTTGGAGTTCTTTACTTATTTGGTTGATAACGAGGGCGT
CTCTTCCAGCTTGTATTTGCAGACCCTGGGTGCGGGCACTGAACCGAAGA
CTGGCTCTGATGCTTGGTTCACGGTTTCGCCGTATACTGTTAGCATCAAT
ACTTAGATGAACCGGTACCTGTCTATCCCCCTGTGCTTGGCGAGCGCTGT
TCCTGCGCTAGCGGGTCTGGCGGCCCGCGACCCCATCGGTACCATCTGCA
CCAAGAACAACATCATCACCACCGACGACTTCATCCTCTACAATAATCTC
TGGGGCGAGGACTATGCCACTTCCGGCTCCGAGTGTACCTACCTCGACTA
TGACAGCGGCAACTCCATCTCATGGCAGACGTCGTGGACCTGGGCTGGCG
GCGACGACTATGTCAAGAGCTATCCCAATGCCGTCCTGAACGTCGGTGCC
AAGCAGCTGAGCACGATCACCAGTATTCCCTCGACCTGGAAATGGAGCTA
CACGGGCAACGACCTCGTCGCCGACGTCTCCTACGATGCCTTCCTCTCCA
CCACTGACTCCACAACCGCCACTCACGAATACGAAATCATGATCTGGCTC
GCCGCCTACGGTGGCATTGAGCCCATCGGCAACTCGGACGGTCCTATCGC
CAGCCCCACTATCGGTGGCTACACCTGGGATCTCTACAAGGGTCCCAACG
ACTGGACAGTGTATAGTTTCGTGGCCCGCGAGACTATCACGGACTTCTCG
GCCGACGTCTTGGAGTTCTTTACTTATTTGGTTGATAACGAGGGCGTCTC
TTCCAGCTTGTATTTGCAGACCCTGGGTGCGGGCACTGAACCGAAGACTG
GCTCTGATGCTTGGTTCACGGTTTCGCCGTATACTGTTAGCATCAATACT
TAGATGAACCGGTACCTGTCTATCCCCCTGTGCTTGGCGAGCGCTGTTCC
TGCGCTAGCGGGTCTGGCGGCCCGCGACCCCATCGGTACCATCTGCACCA
AGAACAACATCATCACCACCGACGACTTCATCCTCTACAATAATCTCTGG
GGCGAGGACTATGCCACTTCCGGCTCCGAGTGTACCTACCTCGACTATGA
CAGCGGCAACTCCATCTCATGGCAGACGTCGTGGACCTGGGCTGGCGGCG
ACGACTATGTCAAGAGCTATCCCAATGCCGTCCTGAACGTCGGTGCCAAG
CAGCTGAGCACGATCACCAGTATTCCCTCGACCTGGAAATGGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000272 | polysaccharide catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0008810 | cellulase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008197-T1.utr3p1 | KJC3_008197-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_6.9 |
| Note | SECRETED:SignalP(1-22) |
| Note | CAZy:GH12 |
| DBxref | InterPro:IPR013320 |
| DBxref | InterPro:IPR013319 |
| DBxref | InterPro:IPR002594 |
| DBxref | PFAM:PF01670 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1240377..1242144 - |
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