|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1595034..1597753+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008320-T2 ID=KJC3_008320-T2|Name=KJC3_008320-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2720bp|location=Sequence derived from alignment at ch6:1595034..1597753+ (Aspergillus niger KJC3)
CTTGGCAACCCACCCTCCTTATTCTCTCTCAACCGATAGAATGTGCTGAT
TCCTTTGAGCCTCGTTGACTGAAGTCCTTACAGTGCCATGCCACTTGGAA
TCTACAGCTTGTATTGAAATTGGTCAGAAAGCGGGTACGGCTACTGATTG
GCATACGCCCGCTTTGACAATTGCCCGTGCTCTATTGCGACCAGGCGACA
TTACTACTACTTCCCACCATGGAAACCAGCATTTCTGAGCTAGTTGAGAG
ACTAGGAAGTGACGAAGATGCGGTGCGCAAAATGGCAGTTTTCAAACTTC
AGGGGAGCATTGGGGATCCCTCCTTTGCCGATAATTTCATCGCAGAAGGT
GGACTCACTAGGTTACGCTACTTGACTCTACATGCGAGTGGTAACACCTT
GGCATATAGCCTCACAAGCTTCGCCAGAATCCTAGAAGTTGACAAAGGCT
GGGATCTAGTAGATCAAGATATGGTTGAAAGAGTAGGTAACATGAACAAG
CTCTCCGTCTCTTCTATAACATACTCCCGCAAACCACCTTATATAGTAAC
ATACTGATATATTGTACCGTCTTCTCTTTCCAGGTTGTTGAACTTATAGT
GACACACCCATTGGTCAACATCCTAAGGGGTGCAATGTCTATATTAGTAT
CCATAGTGTCACATCCTTACTCGGGTAATCACTTATCACAAGATGGAAAT
TTTGGGTTTCGTGCATTGAAGCCCGCAATTGCCATTTACCCGCAGTTTTT
GGAAATGCTTGTCAATAGACTTTCGTCTGCAGACCATGCCCTCTGTGCAA
ATGCACTTCAGTTGATCAATTCGCTCATGCGCGACTCTATCACGAACGAC
GCAGATACGGAATGGCCAAAGTTTATTCAGAAGCTACAAGATCTCGGTGT
GATTAGAGCAGTCTACTCCCTCATGCAAGGTAGTGCCCTGCAGGATCACG
TGCACCCATTGATCGAATTCCAGTCTCTTACCAAAGTTCTTCTGAGGAAA
TGGAGAGAGATATATCTGGATCTGGAGAGACCGGAGCACAGGAGAGCCTT
GAAAGGGATCTATTTGGCTAGCTCACATGAGCGGGGTCAAGAGAAGGGAG
TCGAGAATGGTGATGAGATGCGACAGTCTAAGAAACATAGTTCTGAGAAA
TGGAGACGTCTTGGTTTCGAGACGGAAAGTCCTTCGACGCAGTTTGAGGA
TACCGGGTTCTTGGGAATGATGGATTTGGCAGACTATGTCAGAAACCATC
AAGATGAGTTCCAAAAAATGCTCCTGGAGCAGTCCACGAAGCCTCCTCAG
CAGCGATGTCCCATTGCTCGTGCCTCACTGTCTGTCACCTCGATATTGTA
CCAGCATTTTGAGGTGGACAAATCGGAGATGGATGATTCCAAGGGCTATC
TTCTACTAGAGTCTCGCTCTAACCTTGATAAGGTTTTTGAGCCTCTGCTG
TTGCATTGGACCAGATTGCATGTAGCGGGGTTACATGCTTTCTTTCGTCT
GTGGAAGGCTACCGGAGCGGAAGTCGAAGACTACGGAAAGATCGTTGAGC
TGATCCGGATCTTAATCGAGTCTGTCGTTGGTGGGGCTCCTAGGACAAAG
GATGTGCAAGAAGTGGAAGAAGAACTAGCGAACTTTGAGTATGGTCGGCT
CCGCGAACTGCAAATGGAGTTGTTGGAGCTCGCGTATGAAGATGCCTGGG
GCCAACACCTGCAGCAGATGCGCGAAGAATTGTATCACGAAGCACTTCAA
TTCGTTAAAGAACAGAGAATCCGCTGCCTGTTGCACGGTGCATGGTTCCT
CAACGAGGGCCCTATTAGTTCAGATGCGGGAACCGAGCAACACTCATGGA
AATACGCACAACTTTCGCACAACAGGAGATTCTTACACTTTGGTGATTTT
AATGCCATTCTTGAGAGGCGCCCGGAGCTCGATACTTTACCCGAGAAGAG
TAAGTTTGCTTCTTTGATGTTGTGCGTGGTCTGTTCTGTCCTTGATTTCA
AGCTGACTGCGCTTTACACCTTCAGTCGACCTTTCATTGGTATCTTCAGT
GGTCTCCAATGTCTCTGCTTCCTCCAAAGATCAGTCGACGGCGCCTGCAA
AGGACATGCCCCATGCTGTGTCTTATACTAAGATCACCGTGCACGGATAC
TCGCAGCCTGTACACGAGACTGGAGATATCCACAAAAGTAATGGCCATCG
CCGAACCTCGAGCAGATCAGCGCAAGGTGAATCTGCGCTGTTGAGTTTCT
GTCCGCAATCCACTAGTGTCGCATCCGAATGGCTTGATGGGTTGCTTATG
CTTCTCAACCAGCAGCCTATAACCGCGGAGACAAACAAACTTATAAGCTT
GGTTAGTGATTACGGTCTCAAAATTCGTTTGTTGAATGTTCGCTTCGACG
ATGTAGCCTTCGCGGGTGAAGCACCCCAAGTTCCCACGCGAGATGGCCTT
GATGACAATTACTACTATGACGTCTTTGGTGGCTCATAAAAACGAGCTCC
TCCTCGACACTGACACTGTTACCTGATTTTCCAAATGATTACGAGACATC
CCCATATATGTGGGAGGTGTTTTGACTGACGATAATGTGGATGTATGGGA
CAGCAGCGCAGGGGCTACCGGCTCAGTTGATGTCATATTAGTAGTACTCT
TCGGCTAGATTAGCTGCTAGAACACTGCATCATATACAGTGGAAGTAAAA
ATATACCCTGTAGATATGGT back to topCoding sequence (CDS) from alignment at ch6:1595034..1597753+ >KJC3_008320-T2 ID=KJC3_008320-T2|Name=KJC3_008320-T2|organism=Aspergillus niger KJC3|type=CDS|length=3558bp|location=Sequence derived from alignment at ch6:1595034..1597753+ (Aspergillus niger KJC3)
ATGTCTATATTAGTATCCATAGTGTCACATCCTTACTCGGGTAATCACTT
ATCACAAGATGGAAATTTTGGGTTTCGTGCATTGAAGCCCGCAATTGCCA
TTTACCCGCAGTTTTTGGAAATGCTTGTCAATAGACTTTCGTCTGCAGAC
CATGCCCTCTGTGCAAATGCACTTCAGTTGATCAATTCGCTCATGCGCGA
CTCTATCACGAACGACGCAGATACGGAATGGCCAAAGTTTATTCAGAAGC
TACAAGATCTCGGTGTGATTAGAGCAGTCTACTCCCTCATGCAAGGTAGT
GCCCTGCAGGATCACGTGCACCCATTGATCGAATTCCAGTCTCTTACCAA
AGTTCTTCTGAGGAAATGGAGAGAGATATATCTGGATCTGGAGAGACCGG
AGCACAGGAGAGCCTTGAAAGGGATCTATTTGGCTAGCTCACATGAGCGG
GGTCAAGAGAAGGGAGTCGAGAATGGTGATGAGATGCGACAGTCTAAGAA
ACATAGTTCTGAGAAATGGAGACGTCTTGGTTTCGAGACGGAAAGTCCTT
CGACGCAGTTTGAGGATACCGGGTTCTTGGGAATGATGGATTTGGCAGAC
TATGTCAGAAACCATCAAGATGAGTTCCAAAAAATGCTCCTGGAGCAGTC
CACGAAGCCTCCTCAGCAGCGATGTCCCATTGCTCGTGCCTCACTGTCTG
TCACCTCGATATTGTACCAGCATTTTGAGGTGGACAAATCGGAGATGGAT
GATTCCAAGGGCTATCTTCTACTAGAGTCTCGCTCTAACCTTGATAAGGT
TTTTGAGCCTCTGCTGTTGCATTGGACCAGATTGCATGTAGCGGGGTTAC
ATGCTTTCTTTCGTCTGTGGAAGGCTACCGGAGCGGAAGTCGAAGACTAC
GGAAAGATCGTTGAGCTGATCCGGATCTTAATCGAGTCTGTCGTTGGTGG
GGCTCCTAGGACAAAGGATGTGCAAGAAGTGGAAGAAGAACTAGCGAACT
TTGAGTATGGTCGGCTCCGCGAACTGCAAATGGAGTTGTTGGAGCTCGCG
TATGAAGATGCCTGGGGCCAACACCTGCAGCAGATGCGCGAAGAATTGTA
TCACGAAGCACTTCAATTCGTTAAAGAACAGAGAATCCGCTGCCTGTTGC
ACGGTGCATGGTTCCTCAACGAGGGCCCTATTAGTTCAGATGCGGGAACC
GAGCAACACTCATGGAAATACGCACAACTTTCGCACAACAGGAGATTCTT
ACACTTTGGTGATTTTAATGCCATTCTTGAGAGGCGCCCGGAGCTCGATA
CTTTACCCGAGAAGATCGACCTTTCATTGGTATCTTCAGTGGTCTCCAAT
GTCTCTGCTTCCTCCAAAGATCAGTCGACGGCGCCTGCAAAGGACATGCC
CCATGCTGTGTCTTATACTAAGATCACCGTGCACGGATACTCGCAGCCTG
TACACGAGACTGGAGATATCCACAAAAGTAATGGCCATCGCCGAACCTCG
AGCAGATCAGCGCAAGGTGAATCTGCGCTGTTGAGTTTCTGTCCGCAATC
CACTAGTGTCGCATCCGAATGGCTTGATGGGTTGCTTATGCTTCTCAACC
AGCAGCCTATAACCGCGGAGACAAACAAACTTATAAGCTTGGTTAGTGAT
TACGGTCTCAAAATTCGTTTGTTGAATGTTCGCTTCGACGATGTAGCCTT
CGCGGGTGAAGCACCCCAAGTTCCCACGCGAGATGGCCTTGATGACAATT
ACTACTATGACGTCTTTGGTGGCTCATAAATGTCTATATTAGTATCCATA
GTGTCACATCCTTACTCGGGTAATCACTTATCACAAGATGGAAATTTTGG
GTTTCGTGCATTGAAGCCCGCAATTGCCATTTACCCGCAGTTTTTGGAAA
TGCTTGTCAATAGACTTTCGTCTGCAGACCATGCCCTCTGTGCAAATGCA
CTTCAGTTGATCAATTCGCTCATGCGCGACTCTATCACGAACGACGCAGA
TACGGAATGGCCAAAGTTTATTCAGAAGCTACAAGATCTCGGTGTGATTA
GAGCAGTCTACTCCCTCATGCAAGGTAGTGCCCTGCAGGATCACGTGCAC
CCATTGATCGAATTCCAGTCTCTTACCAAAGTTCTTCTGAGGAAATGGAG
AGAGATATATCTGGATCTGGAGAGACCGGAGCACAGGAGAGCCTTGAAAG
GGATCTATTTGGCTAGCTCACATGAGCGGGGTCAAGAGAAGGGAGTCGAG
AATGGTGATGAGATGCGACAGTCTAAGAAACATAGTTCTGAGAAATGGAG
ACGTCTTGGTTTCGAGACGGAAAGTCCTTCGACGCAGTTTGAGGATACCG
GGTTCTTGGGAATGATGGATTTGGCAGACTATGTCAGAAACCATCAAGAT
GAGTTCCAAAAAATGCTCCTGGAGCAGTCCACGAAGCCTCCTCAGCAGCG
ATGTCCCATTGCTCGTGCCTCACTGTCTGTCACCTCGATATTGTACCAGC
ATTTTGAGGTGGACAAATCGGAGATGGATGATTCCAAGGGCTATCTTCTA
CTAGAGTCTCGCTCTAACCTTGATAAGGTTTTTGAGCCTCTGCTGTTGCA
TTGGACCAGATTGCATGTAGCGGGGTTACATGCTTTCTTTCGTCTGTGGA
AGGCTACCGGAGCGGAAGTCGAAGACTACGGAAAGATCGTTGAGCTGATC
CGGATCTTAATCGAGTCTGTCGTTGGTGGGGCTCCTAGGACAAAGGATGT
GCAAGAAGTGGAAGAAGAACTAGCGAACTTTGAGTATGGTCGGCTCCGCG
AACTGCAAATGGAGTTGTTGGAGCTCGCGTATGAAGATGCCTGGGGCCAA
CACCTGCAGCAGATGCGCGAAGAATTGTATCACGAAGCACTTCAATTCGT
TAAAGAACAGAGAATCCGCTGCCTGTTGCACGGTGCATGGTTCCTCAACG
AGGGCCCTATTAGTTCAGATGCGGGAACCGAGCAACACTCATGGAAATAC
GCACAACTTTCGCACAACAGGAGATTCTTACACTTTGGTGATTTTAATGC
CATTCTTGAGAGGCGCCCGGAGCTCGATACTTTACCCGAGAAGATCGACC
TTTCATTGGTATCTTCAGTGGTCTCCAATGTCTCTGCTTCCTCCAAAGAT
CAGTCGACGGCGCCTGCAAAGGACATGCCCCATGCTGTGTCTTATACTAA
GATCACCGTGCACGGATACTCGCAGCCTGTACACGAGACTGGAGATATCC
ACAAAAGTAATGGCCATCGCCGAACCTCGAGCAGATCAGCGCAAGGTGAA
TCTGCGCTGTTGAGTTTCTGTCCGCAATCCACTAGTGTCGCATCCGAATG
GCTTGATGGGTTGCTTATGCTTCTCAACCAGCAGCCTATAACCGCGGAGA
CAAACAAACTTATAAGCTTGGTTAGTGATTACGGTCTCAAAATTCGTTTG
TTGAATGTTCGCTTCGACGATGTAGCCTTCGCGGGTGAAGCACCCCAAGT
TCCCACGCGAGATGGCCTTGATGACAATTACTACTATGACGTCTTTGGTG
GCTCATAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008320-T2.utr5p1 | KJC3_008320-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008320-T2.utr3p1 | KJC3_008320-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001849 |
| DBxref | InterPro:IPR006816 |
| DBxref | PFAM:PF16457 |
| DBxref | PFAM:PF04727 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1595034..1597753 + |
|
