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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1602076..1603892+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008322-T1 ID=KJC3_008322-T1|Name=KJC3_008322-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1817bp|location=Sequence derived from alignment at ch6:1602076..1603892+ (Aspergillus niger KJC3)
CATAATCACATTTCGACCAGAGCCCGACTCTCACGTCACTCTCGTTCCAA
TCGTGCCTTTCCCTTGTCCCTTTCTTTGGCCTCAATTTACTCTTTCGTCT
GATACAGAACACGGCCAGCAAATGTCCGCTCGAAAATTTTCGGTTCATGA
CCGTAACCCCCTTTCGACACAGACAGAGAGTAAACCGAATGTTGACTACA
AGCTCAAAACTACTATAACTTCAGGTAATGGGATAACCAATGTGGGTTCC
GAAAAGGTTCTGAAGCGGGCAAAAAGGAATGATGAGGTTATGGGATCTAC
AGGTGCCACTTCTGGGCACTTAACAAGTGTATTAAGTGCTACCACTCATA
CAGTACTGCCTCAATGGACGAATATTATTCTAATGTCCTCCTTGATTTTT
GGTGGCTGTTGCGCCAATGTGAGTATGTGCCCAGGTATGGCTAGCTTCCG
CTACTAACACCGGATGGTAGGTTTTTGCACTCGAAGCAATCATCAAGTGA
GTGCTTTCGCAACTCGCAAGATTTTGAACGAGACTGACTCCTGTCTAGAG
ACCAGCCAAGCTCTGGTATATAATCTCCATCAAGCAAGCATTGCCATCCC
AGGTTTCTCTAACATCTTCGCTCAAGGTCCTCTGATAACGTTTGCGCAGT
TTCTTCTAACTGCAGTCTTCACGGTTCCAGGCTTTCTCTCTGTGTCAGCG
GGACCGCGTTCACTATATCTTAGTCCACGTGCCATTCCACTAAGATCATG
GATAGTCTACACGGCTTTTTTCGTTACAGTCAATCTTCTCAACAACTGGG
CCTTTGCATACAAGATTTCAGTCCCGTTGCACATTATTCTAAGATCCGGG
GGGCCAGTAGCGTCTATGATTATCGGTTACTTGTTTAATGCTAAGAGATA
TTCGCGAGGGCAAATACTTGCGGTTCTATTGCTTACTTTGGGTGTGGTCA
CTGCTGCTTTGGCAGATGCCAAGGCTAAGGGCCAATCTATGAATGTTGAG
AGCACTTCTGCAACCACGACATTGGTTGGATTCACCATCCTTGCTCTAGC
GATGATACTCTCGGCTTTCCAGGGGATATATGCGGACAGGCTCTACGAAA
AGTACGGCCGAGACCACTGGAAAGAAGCTCTGTTCTACTCTCACACCCTA
TCACTACCGCTGTTTCTACCTGCTTATGCACAACTTGCGAGCCAGTGGCG
GACGCTTTTCCCCACATATCCTCTAACTTCTGGGCCTGAAGTTTTGGGCA
TGACTGGAATGGGTCCTCCGAGCCATGCATCATCGGCCGGTCTTGAAAGC
ATCAGTTCCTCGGAAGAGTCGTGCGAGGGATGGCATTTTGCGTCAATATT
CCGCAGTCTATCGGGGCAGAATCCGATTTTGAAAGATACTTTTCAATTAC
ACTCAATCTTCACGTGTGTTCCAACACGCGTAATCTACCTTTTGATTAAT
GCACTGACGCAGTACTTGTGCATACGAGGAGTCCACCTCCTCTCTGCAAA
ATCGTCTTCTTTGACTGTCACCGTTGTTCTGAATATTCGGAAGCTTGTTT
CCCTCCTCCTCTCCATCTATCTGTTTGGGAATGCCCTTTCACCGGGTGTG
CTCATGGGCGCGTTGTTTGTTTTCATTGGCGGCGCCTTATATGGCTTTGA
GGGTGCGCGCCCCAGGGTGAAATCTGCTAAAAATGATTAAGGCAGTCATG
TTTCGCTAGAATTGTCTTCCCCGTCTTTGTTACGGCTGGGAAGGTGTTCC
AGACGGTAAAGATAGAAAGATGCATATATATTTATATACGTCTGCGTGTG
TTGTGTGTTCGTATGTG back to topCoding sequence (CDS) from alignment at ch6:1602076..1603892+ >KJC3_008322-T1 ID=KJC3_008322-T1|Name=KJC3_008322-T1|organism=Aspergillus niger KJC3|type=CDS|length=5616bp|location=Sequence derived from alignment at ch6:1602076..1603892+ (Aspergillus niger KJC3)
ATGTCCGCTCGAAAATTTTCGGTTCATGACCGTAACCCCCTTTCGACACA
GACAGAGAGTAAACCGAATGTTGACTACAAGCTCAAAACTACTATAACTT
CAGGTAATGGGATAACCAATGTGGGTTCCGAAAAGGTTCTGAAGCGGGCA
AAAAGGAATGATGAGGTTATGGGATCTACAGGTGCCACTTCTGGGCACTT
AACAAGTGTATTAAGTGCTACCACTCATACAGTACTGCCTCAATGGACGA
ATATTATTCTAATGTCCTCCTTGATTTTTGGTGGCTGTTGCGCCAATGTT
TTTGCACTCGAAGCAATCATCAAAGACCAGCCAAGCTCTGGTCCTCTGAT
AACGTTTGCGCAGTTTCTTCTAACTGCAGTCTTCACGGTTCCAGGCTTTC
TCTCTGTGTCAGCGGGACCGCGTTCACTATATCTTAGTCCACGTGCCATT
CCACTAAGATCATGGATAGTCTACACGGCTTTTTTCGTTACAGTCAATCT
TCTCAACAACTGGGCCTTTGCATACAAGATTTCAGTCCCGTTGCACATTA
TTCTAAGATCCGGGGGGCCAGTAGCGTCTATGATTATCGGTTACTTGTTT
AATGCTAAGAGATATTCGCGAGGGCAAATACTTGCGGTTCTATTGCTTAC
TTTGGGTGTGGTCACTGCTGCTTTGGCAGATGCCAAGGCTAAGGGCCAAT
CTATGAATGTTGAGAGCACTTCTGCAACCACGACATTGGTTGGATTCACC
ATCCTTGCTCTAGCGATGATACTCTCGGCTTTCCAGGGGATATATGCGGA
CAGGCTCTACGAAAAGTACGGCCGAGACCACTGGAAAGAAGCTCTGTTCT
ACTCTCACACCCTATCACTACCGCTGTTTCTACCTGCTTATGCACAACTT
GCGAGCCAGTGGCGGACGCTTTTCCCCACATATCCTCTAACTTCTGGGCC
TGAAGTTTTGGGCATGACTGGAATGGGTCCTCCGAGCCATGCATCATCGG
CCGGTCTTGAAAGCATCAGTTCCTCGGAAGAGTCGTGCGAGGGATGGCAT
TTTGCGTCAATATTCCGCAGTCTATCGGGGCAGAATCCGATTTTGAAAGA
TACTTTTCAATTACACTCAATCTTCACGTGTGTTCCAACACGCGTAATCT
ACCTTTTGATTAATGCACTGACGCAGTACTTGTGCATACGAGGAGTCCAC
CTCCTCTCTGCAAAATCGTCTTCTTTGACTGTCACCGTTGTTCTGAATAT
TCGGAAGCTTGTTTCCCTCCTCCTCTCCATCTATCTGTTTGGGAATGCCC
TTTCACCGGGTGTGCTCATGGGCGCGTTGTTTGTTTTCATTGGCGGCGCC
TTATATGGCTTTGAGGGTGCGCGCCCCAGGGTGAAATCTGCTAAAAATGA
TTAAATGTCCGCTCGAAAATTTTCGGTTCATGACCGTAACCCCCTTTCGA
CACAGACAGAGAGTAAACCGAATGTTGACTACAAGCTCAAAACTACTATA
ACTTCAGGTAATGGGATAACCAATGTGGGTTCCGAAAAGGTTCTGAAGCG
GGCAAAAAGGAATGATGAGGTTATGGGATCTACAGGTGCCACTTCTGGGC
ACTTAACAAGTGTATTAAGTGCTACCACTCATACAGTACTGCCTCAATGG
ACGAATATTATTCTAATGTCCTCCTTGATTTTTGGTGGCTGTTGCGCCAA
TGTTTTTGCACTCGAAGCAATCATCAAAGACCAGCCAAGCTCTGGTCCTC
TGATAACGTTTGCGCAGTTTCTTCTAACTGCAGTCTTCACGGTTCCAGGC
TTTCTCTCTGTGTCAGCGGGACCGCGTTCACTATATCTTAGTCCACGTGC
CATTCCACTAAGATCATGGATAGTCTACACGGCTTTTTTCGTTACAGTCA
ATCTTCTCAACAACTGGGCCTTTGCATACAAGATTTCAGTCCCGTTGCAC
ATTATTCTAAGATCCGGGGGGCCAGTAGCGTCTATGATTATCGGTTACTT
GTTTAATGCTAAGAGATATTCGCGAGGGCAAATACTTGCGGTTCTATTGC
TTACTTTGGGTGTGGTCACTGCTGCTTTGGCAGATGCCAAGGCTAAGGGC
CAATCTATGAATGTTGAGAGCACTTCTGCAACCACGACATTGGTTGGATT
CACCATCCTTGCTCTAGCGATGATACTCTCGGCTTTCCAGGGGATATATG
CGGACAGGCTCTACGAAAAGTACGGCCGAGACCACTGGAAAGAAGCTCTG
TTCTACTCTCACACCCTATCACTACCGCTGTTTCTACCTGCTTATGCACA
ACTTGCGAGCCAGTGGCGGACGCTTTTCCCCACATATCCTCTAACTTCTG
GGCCTGAAGTTTTGGGCATGACTGGAATGGGTCCTCCGAGCCATGCATCA
TCGGCCGGTCTTGAAAGCATCAGTTCCTCGGAAGAGTCGTGCGAGGGATG
GCATTTTGCGTCAATATTCCGCAGTCTATCGGGGCAGAATCCGATTTTGA
AAGATACTTTTCAATTACACTCAATCTTCACGTGTGTTCCAACACGCGTA
ATCTACCTTTTGATTAATGCACTGACGCAGTACTTGTGCATACGAGGAGT
CCACCTCCTCTCTGCAAAATCGTCTTCTTTGACTGTCACCGTTGTTCTGA
ATATTCGGAAGCTTGTTTCCCTCCTCCTCTCCATCTATCTGTTTGGGAAT
GCCCTTTCACCGGGTGTGCTCATGGGCGCGTTGTTTGTTTTCATTGGCGG
CGCCTTATATGGCTTTGAGGGTGCGCGCCCCAGGGTGAAATCTGCTAAAA
ATGATTAAATGTCCGCTCGAAAATTTTCGGTTCATGACCGTAACCCCCTT
TCGACACAGACAGAGAGTAAACCGAATGTTGACTACAAGCTCAAAACTAC
TATAACTTCAGGTAATGGGATAACCAATGTGGGTTCCGAAAAGGTTCTGA
AGCGGGCAAAAAGGAATGATGAGGTTATGGGATCTACAGGTGCCACTTCT
GGGCACTTAACAAGTGTATTAAGTGCTACCACTCATACAGTACTGCCTCA
ATGGACGAATATTATTCTAATGTCCTCCTTGATTTTTGGTGGCTGTTGCG
CCAATGTTTTTGCACTCGAAGCAATCATCAAAGACCAGCCAAGCTCTGGT
CCTCTGATAACGTTTGCGCAGTTTCTTCTAACTGCAGTCTTCACGGTTCC
AGGCTTTCTCTCTGTGTCAGCGGGACCGCGTTCACTATATCTTAGTCCAC
GTGCCATTCCACTAAGATCATGGATAGTCTACACGGCTTTTTTCGTTACA
GTCAATCTTCTCAACAACTGGGCCTTTGCATACAAGATTTCAGTCCCGTT
GCACATTATTCTAAGATCCGGGGGGCCAGTAGCGTCTATGATTATCGGTT
ACTTGTTTAATGCTAAGAGATATTCGCGAGGGCAAATACTTGCGGTTCTA
TTGCTTACTTTGGGTGTGGTCACTGCTGCTTTGGCAGATGCCAAGGCTAA
GGGCCAATCTATGAATGTTGAGAGCACTTCTGCAACCACGACATTGGTTG
GATTCACCATCCTTGCTCTAGCGATGATACTCTCGGCTTTCCAGGGGATA
TATGCGGACAGGCTCTACGAAAAGTACGGCCGAGACCACTGGAAAGAAGC
TCTGTTCTACTCTCACACCCTATCACTACCGCTGTTTCTACCTGCTTATG
CACAACTTGCGAGCCAGTGGCGGACGCTTTTCCCCACATATCCTCTAACT
TCTGGGCCTGAAGTTTTGGGCATGACTGGAATGGGTCCTCCGAGCCATGC
ATCATCGGCCGGTCTTGAAAGCATCAGTTCCTCGGAAGAGTCGTGCGAGG
GATGGCATTTTGCGTCAATATTCCGCAGTCTATCGGGGCAGAATCCGATT
TTGAAAGATACTTTTCAATTACACTCAATCTTCACGTGTGTTCCAACACG
CGTAATCTACCTTTTGATTAATGCACTGACGCAGTACTTGTGCATACGAG
GAGTCCACCTCCTCTCTGCAAAATCGTCTTCTTTGACTGTCACCGTTGTT
CTGAATATTCGGAAGCTTGTTTCCCTCCTCCTCTCCATCTATCTGTTTGG
GAATGCCCTTTCACCGGGTGTGCTCATGGGCGCGTTGTTTGTTTTCATTG
GCGGCGCCTTATATGGCTTTGAGGGTGCGCGCCCCAGGGTGAAATCTGCT
AAAAATGATTAAATGTCCGCTCGAAAATTTTCGGTTCATGACCGTAACCC
CCTTTCGACACAGACAGAGAGTAAACCGAATGTTGACTACAAGCTCAAAA
CTACTATAACTTCAGGTAATGGGATAACCAATGTGGGTTCCGAAAAGGTT
CTGAAGCGGGCAAAAAGGAATGATGAGGTTATGGGATCTACAGGTGCCAC
TTCTGGGCACTTAACAAGTGTATTAAGTGCTACCACTCATACAGTACTGC
CTCAATGGACGAATATTATTCTAATGTCCTCCTTGATTTTTGGTGGCTGT
TGCGCCAATGTTTTTGCACTCGAAGCAATCATCAAAGACCAGCCAAGCTC
TGGTCCTCTGATAACGTTTGCGCAGTTTCTTCTAACTGCAGTCTTCACGG
TTCCAGGCTTTCTCTCTGTGTCAGCGGGACCGCGTTCACTATATCTTAGT
CCACGTGCCATTCCACTAAGATCATGGATAGTCTACACGGCTTTTTTCGT
TACAGTCAATCTTCTCAACAACTGGGCCTTTGCATACAAGATTTCAGTCC
CGTTGCACATTATTCTAAGATCCGGGGGGCCAGTAGCGTCTATGATTATC
GGTTACTTGTTTAATGCTAAGAGATATTCGCGAGGGCAAATACTTGCGGT
TCTATTGCTTACTTTGGGTGTGGTCACTGCTGCTTTGGCAGATGCCAAGG
CTAAGGGCCAATCTATGAATGTTGAGAGCACTTCTGCAACCACGACATTG
GTTGGATTCACCATCCTTGCTCTAGCGATGATACTCTCGGCTTTCCAGGG
GATATATGCGGACAGGCTCTACGAAAAGTACGGCCGAGACCACTGGAAAG
AAGCTCTGTTCTACTCTCACACCCTATCACTACCGCTGTTTCTACCTGCT
TATGCACAACTTGCGAGCCAGTGGCGGACGCTTTTCCCCACATATCCTCT
AACTTCTGGGCCTGAAGTTTTGGGCATGACTGGAATGGGTCCTCCGAGCC
ATGCATCATCGGCCGGTCTTGAAAGCATCAGTTCCTCGGAAGAGTCGTGC
GAGGGATGGCATTTTGCGTCAATATTCCGCAGTCTATCGGGGCAGAATCC
GATTTTGAAAGATACTTTTCAATTACACTCAATCTTCACGTGTGTTCCAA
CACGCGTAATCTACCTTTTGATTAATGCACTGACGCAGTACTTGTGCATA
CGAGGAGTCCACCTCCTCTCTGCAAAATCGTCTTCTTTGACTGTCACCGT
TGTTCTGAATATTCGGAAGCTTGTTTCCCTCCTCCTCTCCATCTATCTGT
TTGGGAATGCCCTTTCACCGGGTGTGCTCATGGGCGCGTTGTTTGTTTTC
ATTGGCGGCGCCTTATATGGCTTTGAGGGTGCGCGCCCCAGGGTGAAATC
TGCTAAAAATGATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008322-T1.utr5p1 | KJC3_008322-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008322-T1.utr3p1 | KJC3_008322-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013657 |
| DBxref | PFAM:PF08449 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1602076..1603892 + |
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