You are here

Home

KJC3_008422-T1, KJC3_008422-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008422-T1
Unique NameKJC3_008422-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2018663..2019634+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008422-T1 ID=KJC3_008422-T1|Name=KJC3_008422-T1|organism=Aspergillus niger KJC3|type=mRNA|length=972bp|location=Sequence derived from alignment at ch6:2018663..2019634+ (Aspergillus niger KJC3)
TTCCTGGCCAACAGTCAGTCCCTCTCCTCTTACAAGGAAGAACGTAAACC
ATGGCCGGAAAGACACTAGGCCGATCATCGGGCGTGAGTCACTCTTCTTT
TCTTGTTCTCTTGAAATTAGTAGTGGTAGCAGTTGCAAGTTGGGTCCCAT
GACTTGCTGCGAAGTATATATTCAATTTCCATTGAACAGCACACACACTA
CTCCAGATGATCACCAGTCACCATAACTACTAGTTAGTAATTAACATATC
GATGAACAGTCTCTCAATGCCCCAATAGCCGCCTTCACCATGGCCCTACT
ACTTGGCTCCTACTGCATCAAATCCATCCACACCGCTCGTCGCGAGGCAC
AATCCACGTCAAGCACCACAACCACTACGCCCCGACCTAGGAAGGCAGAG
TCACAGTCTTCATGGGTACAGCAGGCACTTGAAGAAAGTCGAGAGGGGGA
GAAGAAGGGATCTCAGTGATTGATTTGGGGCAGAACTGAATGTAAATCTT
ACAAGCTATGCGTTGTACATACTGTTGTAATTGCTGTCTGGATATCTGGG
ACATTCTCTCAAAATTTACTGCATTAAAGAGCACACACACAAAACAATAT
GATATAGCTAATATAAACATCGTGCAACAGCCAACAGCACAAACACAATA
TAAAAAGCATCATATCAAATAATCCATTATCAGAATTTTCAGTGTATCAA
TGATCATATCCATGTTTGATAACAGGATCTACCATTAAAAATTATTCATC
ATATAAATGGAGTCAAATGATAGTGATCACCACAACTTCACACAAACAAC
AATTAGAAAAGAGTAGCAGTCGGATATGCATCAATCATCATAAGCACAAA
CACATTATTGCGCAGCAGAAGAATGACATTAACCAACAGTGTCGGTTAAT
ATTCGTATAATATGGCTTTCATTATAGCCATGGTTGGTGGGAAGGAAACA
AACCGCACAGAGAATTTCGCCG
back to top

Coding sequence (CDS) from alignment at ch6:2018663..2019634+

>KJC3_008422-T1 ID=KJC3_008422-T1|Name=KJC3_008422-T1|organism=Aspergillus niger KJC3|type=CDS|length=486bp|location=Sequence derived from alignment at ch6:2018663..2019634+ (Aspergillus niger KJC3)
ATGGCCGGAAAGACACTAGGCCGATCATCGGGCTCTCTCAATGCCCCAAT
AGCCGCCTTCACCATGGCCCTACTACTTGGCTCCTACTGCATCAAATCCA
TCCACACCGCTCGTCGCGAGGCACAATCCACGTCAAGCACCACAACCACT
ACGCCCCGACCTAGGAAGGCAGAGTCACAGTCTTCATGGGTACAGCAGGC
ACTTGAAGAAAGTCGAGAGGGGGAGAAGAAGGGATCTCAGTGAATGGCCG
GAAAGACACTAGGCCGATCATCGGGCTCTCTCAATGCCCCAATAGCCGCC
TTCACCATGGCCCTACTACTTGGCTCCTACTGCATCAAATCCATCCACAC
CGCTCGTCGCGAGGCACAATCCACGTCAAGCACCACAACCACTACGCCCC
GACCTAGGAAGGCAGAGTCACAGTCTTCATGGGTACAGCAGGCACTTGAA
GAAAGTCGAGAGGGGGAGAAGAAGGGATCTCAGTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008422KJC3_008422Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008422-T1.utr5p1KJC3_008422-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008422-T1.exon1KJC3_008422-T1.exon1Aspergillus niger KJC3exon
KJC3_008422-T1.exon2KJC3_008422-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008422-T1.cdsKJC3_008422-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008422-T1.utr3p1KJC3_008422-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008422-T1KJC3_008422-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_6.13
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2018663..2019634 +
Powered by Drupal