You are here

Home

KJC3_008437-T1, KJC3_008437-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008437-T1
Unique NameKJC3_008437-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2060159..2061363+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008437-T1 ID=KJC3_008437-T1|Name=KJC3_008437-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1205bp|location=Sequence derived from alignment at ch6:2060159..2061363+ (Aspergillus niger KJC3)
CCACCACCAGATCAGATCAGATAAACCCCGACCGATGACGCAGTCCGCCT
TACCGAAGAGCGGCGGATTTCCTTCCTCTCATCTTATCCCGATAAAGTCG
CACCTCCAACAACTCTCCCTCCATTCAATCGCACCCTCCATTTCCCCTTA
ATTTCACCCTCTACCTAAATGTAACACATCATTCCCAAAGAAACCAACAC
AAAATAACCGTCAAAAAGAATCATGACCCTCCCACGTCTACGGCCCACGG
CCACCCGCCTCCGATACACCACCATCACCACCAAGACCACCACCACACCC
TATACCAAACCACTATACCGCACATTCACCTCATCATCCCCCAAACCCTA
CTCCTCGGCGCGCGAACCAACCTACTACGAAATCCTCGACGTGCCGCCAA
CCGCCACTCAATCCGAGATCAAGAAGTAAATCTCCCCCCCATCCCCTCAC
CACCTAATTCCACCACCCCTATCATCATCTAATTCCTTGATAACAACAGA
AAATTCTACTCCCTCTCCCTAAAACACCACCCCGACCGCAACCGCAGCGA
CCCCACGGCATCCAACCGCTTCGCCCAAATCTCCAGCGCGTACAACACGC
TCAGCAACGCCACAAAACGCAGTATCTACGACCGCGACCACCACATCCAC
GCCCACCCCTCCTCCACACACAGCACCGCCAACCCCGGCCAACACCCCAT
GGGCAGCTACAGTAGCTACAGCGCAAACCTGCACACGAAGGGGGCGTCGT
ACGCGGGCTCGCGACCAGCTAGCGGATTGAGTAAACGGAGGGGACAGTTC
CGCGGGCCGCCGCCTAGTTTCTATGCGCATGGGGGGTATGGGGGCACGGG
GAGACGGGCAGCGGGTGCTGCTGGAGGGGGTGGTGGGGAGGGTGGTGGTG
CAAAGGGGTCGGAGGACGATCCGACGTCATTTATTGATCGGAATACCGTG
TGGCATTTTAATGCAAAGGGGCATTATAAGACGCAGACGAGGGAGGATGA
GAGGAGGCAGCAACGGAGGTCGAGGGAGATGGCGGGGGCGGCATCGATTA
ATGACAAGTATCTTGGGAGTCCCGGGGCAATGGCCGTGAGGTTTATTGTG
GTCTGTGGGATATTGATGGGGGCGGGCGCTATGACGGGGGCGTTCCACAA
TGATCGGGCCGGTGCGAAGACGACGACTAAATCCGTGCGGCGGAAGGAGG
TTTGA
back to top

Coding sequence (CDS) from alignment at ch6:2060159..2061363+

>KJC3_008437-T1 ID=KJC3_008437-T1|Name=KJC3_008437-T1|organism=Aspergillus niger KJC3|type=CDS|length=1818bp|location=Sequence derived from alignment at ch6:2060159..2061363+ (Aspergillus niger KJC3)
ATGACCCTCCCACGTCTACGGCCCACGGCCACCCGCCTCCGATACACCAC
CATCACCACCAAGACCACCACCACACCCTATACCAAACCACTATACCGCA
CATTCACCTCATCATCCCCCAAACCCTACTCCTCGGCGCGCGAACCAACC
TACTACGAAATCCTCGACGTGCCGCCAACCGCCACTCAATCCGAGATCAA
GAAAAAATTCTACTCCCTCTCCCTAAAACACCACCCCGACCGCAACCGCA
GCGACCCCACGGCATCCAACCGCTTCGCCCAAATCTCCAGCGCGTACAAC
ACGCTCAGCAACGCCACAAAACGCAGTATCTACGACCGCGACCACCACAT
CCACGCCCACCCCTCCTCCACACACAGCACCGCCAACCCCGGCCAACACC
CCATGGGCAGCTACAGTAGCTACAGCGCAAACCTGCACACGAAGGGGGCG
TCGTACGCGGGCTCGCGACCAGCTAGCGGATTGAGTAAACGGAGGGGACA
GTTCCGCGGGCCGCCGCCTAGTTTCTATGCGCATGGGGGGTATGGGGGCA
CGGGGAGACGGGCAGCGGGTGCTGCTGGAGGGGGTGGTGGGGAGGGTGGT
GGTGCAAAGGGGTCGGAGGACGATCCGACGTCATTTATTGATCGGAATAC
CGTGTGGCATTTTAATGCAAAGGGGCATTATAAGACGCAGACGAGGGAGG
ATGAGAGGAGGCAGCAACGGAGGTCGAGGGAGATGGCGGGGGCGGCATCG
ATTAATGACAAGTATCTTGGGAGTCCCGGGGCAATGGCCGTGAGGTTTAT
TGTGGTCTGTGGGATATTGATGGGGGCGGGCGCTATGACGGGGGCGTTCC
ACAATGATCGGGCCGGTGCGAAGACGACGACTAAATCCGTGCGGCGGAAG
GAGGTTTGAATGACCCTCCCACGTCTACGGCCCACGGCCACCCGCCTCCG
ATACACCACCATCACCACCAAGACCACCACCACACCCTATACCAAACCAC
TATACCGCACATTCACCTCATCATCCCCCAAACCCTACTCCTCGGCGCGC
GAACCAACCTACTACGAAATCCTCGACGTGCCGCCAACCGCCACTCAATC
CGAGATCAAGAAAAAATTCTACTCCCTCTCCCTAAAACACCACCCCGACC
GCAACCGCAGCGACCCCACGGCATCCAACCGCTTCGCCCAAATCTCCAGC
GCGTACAACACGCTCAGCAACGCCACAAAACGCAGTATCTACGACCGCGA
CCACCACATCCACGCCCACCCCTCCTCCACACACAGCACCGCCAACCCCG
GCCAACACCCCATGGGCAGCTACAGTAGCTACAGCGCAAACCTGCACACG
AAGGGGGCGTCGTACGCGGGCTCGCGACCAGCTAGCGGATTGAGTAAACG
GAGGGGACAGTTCCGCGGGCCGCCGCCTAGTTTCTATGCGCATGGGGGGT
ATGGGGGCACGGGGAGACGGGCAGCGGGTGCTGCTGGAGGGGGTGGTGGG
GAGGGTGGTGGTGCAAAGGGGTCGGAGGACGATCCGACGTCATTTATTGA
TCGGAATACCGTGTGGCATTTTAATGCAAAGGGGCATTATAAGACGCAGA
CGAGGGAGGATGAGAGGAGGCAGCAACGGAGGTCGAGGGAGATGGCGGGG
GCGGCATCGATTAATGACAAGTATCTTGGGAGTCCCGGGGCAATGGCCGT
GAGGTTTATTGTGGTCTGTGGGATATTGATGGGGGCGGGCGCTATGACGG
GGGCGTTCCACAATGATCGGGCCGGTGCGAAGACGACGACTAAATCCGTG
CGGCGGAAGGAGGTTTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008437KJC3_008437Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008437-T1KJC3_008437-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008437-T1.utr5p1KJC3_008437-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_008437-T1.utr5p2KJC3_008437-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008437-T1.exon1KJC3_008437-T1.exon1Aspergillus niger KJC3exon
KJC3_008437-T1.exon2KJC3_008437-T1.exon2Aspergillus niger KJC3exon
KJC3_008437-T1.exon3KJC3_008437-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008437-T1.cdsKJC3_008437-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR018253
DBxrefInterPro:IPR036869
DBxrefInterPro:IPR001623
DBxrefPFAM:PF00226
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2060159..2061363 +
Powered by Drupal